HEADER IMMUNE SYSTEM 18-JUL-16 5KWG TITLE CRYSTAL STRUCTURE OF EXTRACELLULAR DOMAIN OF HER2 IN COMPLEX WITH FCAB TITLE 2 H10-03-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: METASTATIC LYMPH NODE GENE 19 PROTEIN,MLN 19,PROTO-ONCOGENE COMPND 5 NEU,PROTO-ONCOGENE C-ERBB-2,TYROSINE KINASE-TYPE CELL SURFACE COMPND 6 RECEPTOR HER2,P185ERBB2; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHO LEC1; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: IGHG1; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 20 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS IMMUNE SYSTEM, ANTIBODY ENGINEERING, IMMUNOGLOBULIN G1, FC FRAGMENT, KEYWDS 2 GLYCOSYLATIONS, CH3 DOMAIN, FCAB, HUMAN EPIDERMAL GROWTH FACTOR KEYWDS 3 RECEPTOR 2, HER2/NEU, ERBB-2, CELL SURFACE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.LOBNER,K.GORITZER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 6 16-OCT-24 5KWG 1 REMARK REVDAT 5 10-JAN-24 5KWG 1 REMARK REVDAT 4 16-AUG-17 5KWG 1 REMARK REVDAT 3 14-JUN-17 5KWG 1 JRNL REVDAT 2 31-MAY-17 5KWG 1 JRNL REVDAT 1 12-APR-17 5KWG 0 JRNL AUTH E.LOBNER,A.S.HUMM,K.GORITZER,G.MLYNEK,M.G.PUCHINGER, JRNL AUTH 2 C.HASENHINDL,F.RUKER,M.W.TRAXLMAYR,K.DJINOVIC-CARUGO, JRNL AUTH 3 C.OBINGER JRNL TITL FCAB-HER2 INTERACTION: A MENAGE A TROIS. LESSONS FROM X-RAY JRNL TITL 2 AND SOLUTION STUDIES. JRNL REF STRUCTURE V. 25 878 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28528777 JRNL DOI 10.1016/J.STR.2017.04.014 REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2247: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.328 REMARK 3 R VALUE (WORKING SET) : 0.324 REMARK 3 FREE R VALUE : 0.369 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5347 - 9.5405 1.00 1319 152 0.2479 0.3374 REMARK 3 2 9.5405 - 7.5825 1.00 1315 143 0.3237 0.3633 REMARK 3 3 7.5825 - 6.6270 1.00 1323 148 0.3117 0.3576 REMARK 3 4 6.6270 - 6.0223 1.00 1321 137 0.3559 0.4387 REMARK 3 5 6.0223 - 5.5914 1.00 1332 138 0.3798 0.3823 REMARK 3 6 5.5914 - 5.2622 1.00 1321 144 0.3710 0.4006 REMARK 3 7 5.2622 - 4.9990 1.00 1291 153 0.3883 0.4032 REMARK 3 8 4.9990 - 4.7816 1.00 1289 150 0.3732 0.3701 REMARK 3 9 4.7816 - 4.5976 1.00 1353 142 0.3885 0.3981 REMARK 3 10 4.5976 - 4.4391 1.00 1344 147 0.3838 0.3801 REMARK 3 11 4.4391 - 4.3004 1.00 1300 152 0.3998 0.3658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.870 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 174.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6191 REMARK 3 ANGLE : 0.595 8437 REMARK 3 CHIRALITY : 0.043 928 REMARK 3 PLANARITY : 0.004 1105 REMARK 3 DIHEDRAL : 8.458 3755 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5980 12.8720 -4.5736 REMARK 3 T TENSOR REMARK 3 T11: 2.0299 T22: 2.1659 REMARK 3 T33: 1.8939 T12: 0.0012 REMARK 3 T13: 0.1138 T23: -0.1453 REMARK 3 L TENSOR REMARK 3 L11: 7.1196 L22: 6.0477 REMARK 3 L33: 1.9273 L12: -3.6312 REMARK 3 L13: -0.3973 L23: 3.0570 REMARK 3 S TENSOR REMARK 3 S11: -0.5614 S12: -0.3228 S13: -0.0351 REMARK 3 S21: 0.7589 S22: 0.3911 S23: -1.0412 REMARK 3 S31: 0.7263 S32: -0.0625 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 225 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1020 8.1130 -34.0927 REMARK 3 T TENSOR REMARK 3 T11: 1.8087 T22: 1.9913 REMARK 3 T33: 2.4179 T12: 0.0383 REMARK 3 T13: -0.0327 T23: -0.1499 REMARK 3 L TENSOR REMARK 3 L11: 1.6341 L22: 5.1544 REMARK 3 L33: 1.1892 L12: -1.4472 REMARK 3 L13: 0.7083 L23: -2.5211 REMARK 3 S TENSOR REMARK 3 S11: -0.4122 S12: 0.4997 S13: -1.3225 REMARK 3 S21: -0.6686 S22: 0.1748 S23: -0.3658 REMARK 3 S31: 0.6561 S32: -0.5225 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 430 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3245 21.8094 -45.9081 REMARK 3 T TENSOR REMARK 3 T11: 0.9957 T22: 2.8202 REMARK 3 T33: 1.9182 T12: 0.4459 REMARK 3 T13: -0.0249 T23: -0.4707 REMARK 3 L TENSOR REMARK 3 L11: 0.8008 L22: 4.9205 REMARK 3 L33: 4.7181 L12: 1.3805 REMARK 3 L13: 1.8197 L23: 2.2343 REMARK 3 S TENSOR REMARK 3 S11: -0.9427 S12: 0.0813 S13: 0.1630 REMARK 3 S21: 1.6293 S22: -0.3840 S23: 1.3151 REMARK 3 S31: 0.1949 S32: 0.4945 S33: -0.9107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2771 8.0373 -42.8983 REMARK 3 T TENSOR REMARK 3 T11: 2.8479 T22: 4.0218 REMARK 3 T33: 3.0939 T12: -0.1306 REMARK 3 T13: 0.1127 T23: -0.6018 REMARK 3 L TENSOR REMARK 3 L11: 1.8583 L22: 0.6570 REMARK 3 L33: 2.7242 L12: -0.8748 REMARK 3 L13: -2.2494 L23: 0.9533 REMARK 3 S TENSOR REMARK 3 S11: -1.4850 S12: 0.0890 S13: -0.1455 REMARK 3 S21: 1.0748 S22: 1.7431 S23: 0.4087 REMARK 3 S31: -1.6641 S32: 0.9454 S33: -0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7768 6.1212 -61.5620 REMARK 3 T TENSOR REMARK 3 T11: 1.9031 T22: 3.0847 REMARK 3 T33: 2.8942 T12: -0.2515 REMARK 3 T13: -0.6333 T23: -0.2597 REMARK 3 L TENSOR REMARK 3 L11: 2.2005 L22: 2.0011 REMARK 3 L33: 5.1080 L12: -4.8832 REMARK 3 L13: 0.3929 L23: -0.2632 REMARK 3 S TENSOR REMARK 3 S11: 0.3010 S12: 0.1919 S13: -0.6339 REMARK 3 S21: -2.5214 S22: -2.1043 S23: -1.4654 REMARK 3 S31: -1.1603 S32: -0.0601 S33: -0.8351 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4593 6.2524 -50.1383 REMARK 3 T TENSOR REMARK 3 T11: 2.1698 T22: 2.9564 REMARK 3 T33: 2.2004 T12: 0.3330 REMARK 3 T13: -0.1125 T23: -0.5642 REMARK 3 L TENSOR REMARK 3 L11: 5.3733 L22: 0.1060 REMARK 3 L33: 3.5678 L12: 0.6927 REMARK 3 L13: 4.3821 L23: 0.5267 REMARK 3 S TENSOR REMARK 3 S11: 0.4543 S12: -0.3188 S13: -0.5459 REMARK 3 S21: 0.5668 S22: -1.8237 S23: 0.1535 REMARK 3 S31: -0.6035 S32: 0.0382 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000220984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : C(110) REMARK 200 OPTICS : CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V.OCT-2015, XDS V.OCT-2015 REMARK 200 DATA SCALING SOFTWARE : XDS V.OCT-2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8755 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.532 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.18980 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10-2247 REMARK 200 STARTING MODEL: 5K33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM CITRIC ACID, 18% (W/V) PEG 3350, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.38000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.69000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.69000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -117.38000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN C 103 REMARK 465 THR C 104 REMARK 465 THR C 105 REMARK 465 PRO C 106 REMARK 465 VAL C 107 REMARK 465 GLU C 303 REMARK 465 ASP C 304 REMARK 465 GLY C 305 REMARK 465 ALA C 364 REMARK 465 SER C 365 REMARK 465 ASN C 366 REMARK 465 HIS C 567 REMARK 465 TYR C 568 REMARK 465 LYS C 569 REMARK 465 ALA C 576 REMARK 465 ARG C 577 REMARK 465 CYS C 578 REMARK 465 PRO C 579 REMARK 465 SER C 580 REMARK 465 GLY C 581 REMARK 465 VAL C 582 REMARK 465 LYS C 583 REMARK 465 PRO C 584 REMARK 465 ASP C 585 REMARK 465 LEU C 586 REMARK 465 SER C 587 REMARK 465 TYR C 588 REMARK 465 MET C 589 REMARK 465 PRO C 590 REMARK 465 ILE C 591 REMARK 465 TRP C 592 REMARK 465 LYS C 593 REMARK 465 PHE C 594 REMARK 465 PRO C 595 REMARK 465 ASP C 596 REMARK 465 GLU C 597 REMARK 465 GLU C 598 REMARK 465 GLY C 599 REMARK 465 ALA C 600 REMARK 465 CYS C 601 REMARK 465 GLN C 602 REMARK 465 PRO C 603 REMARK 465 CYS C 604 REMARK 465 PRO C 605 REMARK 465 ILE C 606 REMARK 465 ASN C 607 REMARK 465 CYS C 608 REMARK 465 THR C 609 REMARK 465 HIS C 610 REMARK 465 SER C 611 REMARK 465 CYS C 612 REMARK 465 VAL C 613 REMARK 465 ASP C 614 REMARK 465 LEU C 615 REMARK 465 ASP C 616 REMARK 465 ASP C 617 REMARK 465 LYS C 618 REMARK 465 GLY C 619 REMARK 465 CYS C 620 REMARK 465 PRO C 621 REMARK 465 ALA C 622 REMARK 465 GLU C 623 REMARK 465 GLN C 624 REMARK 465 ARG C 625 REMARK 465 ALA C 626 REMARK 465 SER C 627 REMARK 465 PRO C 628 REMARK 465 LEU C 629 REMARK 465 THR C 630 REMARK 465 SER C 631 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 522 HG CYS C 538 0.87 REMARK 500 HE ARG C 434 O THR C 504 1.48 REMARK 500 O ARG C 514 H GLN C 516 1.48 REMARK 500 NE ARG C 434 O THR C 504 2.09 REMARK 500 O ARG C 514 N GLN C 516 2.10 REMARK 500 NH2 ARG C 116 O ALA C 169 2.14 REMARK 500 NH1 ARG C 434 OE1 GLN C 516 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 16 77.86 50.42 REMARK 500 PRO C 17 -8.87 -58.72 REMARK 500 GLN C 35 70.79 -108.89 REMARK 500 TYR C 42 78.93 53.21 REMARK 500 GLN C 68 57.05 -111.74 REMARK 500 ASN C 89 -44.57 -139.39 REMARK 500 GLN C 119 80.58 56.59 REMARK 500 LEU C 127 -160.54 -124.03 REMARK 500 LEU C 146 81.10 62.91 REMARK 500 ASP C 149 0.12 -67.13 REMARK 500 SER C 167 -61.21 -97.00 REMARK 500 LYS C 178 -72.44 -49.78 REMARK 500 CYS C 190 -166.91 -67.39 REMARK 500 THR C 194 49.55 -148.45 REMARK 500 ARG C 195 -64.04 -131.66 REMARK 500 CYS C 222 148.99 -176.82 REMARK 500 PHE C 236 159.23 176.38 REMARK 500 ASN C 237 77.22 -109.00 REMARK 500 HIS C 238 91.06 -65.97 REMARK 500 ASN C 253 -175.46 -69.95 REMARK 500 PHE C 269 141.93 -173.81 REMARK 500 SER C 272 100.24 -163.85 REMARK 500 ASN C 280 -7.02 70.00 REMARK 500 PRO C 294 -162.06 -69.69 REMARK 500 HIS C 296 45.09 38.59 REMARK 500 LYS C 314 155.19 177.57 REMARK 500 PRO C 315 173.09 -53.89 REMARK 500 LEU C 328 38.71 -140.47 REMARK 500 ALA C 333 -166.34 -166.76 REMARK 500 ASN C 338 38.49 37.95 REMARK 500 PHE C 349 68.03 -114.43 REMARK 500 GLU C 383 147.47 -171.82 REMARK 500 TYR C 387 -165.70 -112.73 REMARK 500 SER C 391 -37.05 -136.29 REMARK 500 TRP C 393 141.23 -175.62 REMARK 500 PHE C 403 40.11 -86.10 REMARK 500 ALA C 418 -23.27 -146.16 REMARK 500 SER C 435 41.07 -91.72 REMARK 500 HIS C 447 173.61 177.73 REMARK 500 ALA C 470 -157.64 -164.55 REMARK 500 GLU C 485 -3.84 73.79 REMARK 500 ARG C 495 16.25 56.96 REMARK 500 VAL C 507 -65.52 -128.47 REMARK 500 GLN C 516 20.38 -145.04 REMARK 500 CYS C 522 71.70 -68.60 REMARK 500 ARG C 523 101.63 -44.09 REMARK 500 LEU C 525 -15.13 85.28 REMARK 500 PRO C 529 94.57 -61.77 REMARK 500 ARG C 530 171.45 -57.34 REMARK 500 ASN C 534 131.60 -171.93 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 521 CYS C 522 149.31 REMARK 500 VAL A 308 LEU A 309 139.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 5KWG C 1 631 UNP P04626 ERBB2_HUMAN 23 653 DBREF 5KWG A 225 447 UNP P01857 IGHG1_HUMAN 108 330 SEQADV 5KWG TYR A 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5KWG LEU A 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5KWG TYR A 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5KWG GLY A 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5KWG ASP A 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5KWG PRO A 413 UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5KWG ARG A 414 UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5KWG HIS A 415 UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5KWG SER A 415A UNP P01857 INSERTION SEQADV 5KWG ALA A 415B UNP P01857 INSERTION SEQADV 5KWG ARG A 415C UNP P01857 INSERTION SEQADV 5KWG MET A 415D UNP P01857 INSERTION SEQADV 5KWG TRP A 415E UNP P01857 INSERTION SEQADV 5KWG ALA A 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5KWG HIS A 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQRES 1 C 631 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 C 631 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 C 631 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 C 631 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 C 631 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 C 631 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 C 631 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 C 631 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 C 631 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 C 631 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 C 631 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 C 631 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 C 631 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 C 631 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 C 631 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 C 631 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 C 631 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 C 631 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 C 631 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 C 631 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 C 631 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 C 631 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 C 631 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 C 631 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 C 631 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 C 631 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 C 631 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 C 631 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 C 631 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 C 631 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 C 631 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 C 631 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 C 631 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 C 631 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 C 631 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 C 631 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 C 631 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 C 631 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 C 631 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 C 631 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 C 631 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 C 631 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 C 631 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 C 631 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 C 631 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 C 631 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 C 631 GLY ALA CYS GLN PRO CYS PRO ILE ASN CYS THR HIS SER SEQRES 48 C 631 CYS VAL ASP LEU ASP ASP LYS GLY CYS PRO ALA GLU GLN SEQRES 49 C 631 ARG ALA SER PRO LEU THR SER SEQRES 1 A 228 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 228 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 228 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 228 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 228 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 228 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 228 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 228 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 228 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 228 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 228 ARG ASP GLU TYR LEU TYR GLY ASP VAL SER LEU THR CYS SEQRES 12 A 228 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 228 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 228 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 228 TYR SER LYS LEU THR VAL PRO ARG HIS SER ALA ARG MET SEQRES 16 A 228 TRP ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 A 228 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 A 228 LEU SER LEU SER PRO GLY LYS HELIX 1 AA1 SER C 16 MET C 23 1 8 HELIX 2 AA2 LEU C 24 GLN C 29 1 6 HELIX 3 AA3 LEU C 49 GLN C 53 5 5 HELIX 4 AA4 LEU C 85 ASP C 88 5 4 HELIX 5 AA5 LEU C 146 PHE C 151 5 6 HELIX 6 AA6 SER C 186 CYS C 190 5 5 HELIX 7 AA7 ILE C 339 ALA C 343 5 5 HELIX 8 AA8 GLN C 376 THR C 380 5 5 HELIX 9 AA9 LEU C 400 GLN C 404 5 5 HELIX 10 AB1 LEU C 414 ALA C 418 5 5 HELIX 11 AB2 PRO C 459 PHE C 464 1 6 HELIX 12 AB3 PRO C 478 VAL C 483 1 6 HELIX 13 AB4 CYS C 493 HIS C 497 5 5 HELIX 14 AB5 GLY C 502 CYS C 506 5 5 HELIX 15 AB6 HIS A 310 GLY A 316 1 7 HELIX 16 AB7 SER A 354 TYR A 358 5 5 HELIX 17 AB8 SER A 415A GLY A 420 1 10 HELIX 18 AB9 LEU A 432 TYR A 436 5 5 SHEET 1 AA1 2 CYS C 4 THR C 5 0 SHEET 2 AA1 2 VAL C 34 GLN C 35 1 O GLN C 35 N CYS C 4 SHEET 1 AA2 5 LEU C 38 THR C 41 0 SHEET 2 AA2 5 VAL C 62 ALA C 65 1 O LEU C 63 N LEU C 40 SHEET 3 AA2 5 TYR C 90 LEU C 95 1 O ALA C 91 N VAL C 62 SHEET 4 AA2 5 GLY C 130 GLN C 134 1 O GLY C 130 N ALA C 91 SHEET 5 AA2 5 THR C 160 ILE C 162 1 O LEU C 161 N ILE C 133 SHEET 1 AA3 2 CYS C 218 CYS C 222 0 SHEET 2 AA3 2 CYS C 230 CYS C 233 -1 O ALA C 232 N ALA C 219 SHEET 1 AA4 2 VAL C 250 TYR C 252 0 SHEET 2 AA4 2 SER C 259 PRO C 261 -1 O MET C 260 N THR C 251 SHEET 1 AA5 2 GLN C 298 VAL C 300 0 SHEET 2 AA5 2 ARG C 308 GLU C 310 -1 O GLU C 310 N GLN C 298 SHEET 1 AA6 2 CYS C 320 TYR C 321 0 SHEET 2 AA6 2 ILE C 348 PHE C 349 1 O PHE C 349 N CYS C 320 SHEET 1 AA7 3 GLN C 424 LEU C 426 0 SHEET 2 AA7 3 ALA C 444 ASN C 449 1 O HIS C 448 N GLY C 425 SHEET 3 AA7 3 LEU C 471 HIS C 473 1 O LEU C 472 N ILE C 446 SHEET 1 AA8 4 GLU C 517 VAL C 519 0 SHEET 2 AA8 4 PHE C 512 ARG C 514 -1 N PHE C 512 O VAL C 519 SHEET 3 AA8 4 HIS C 537 PRO C 540 1 O CYS C 538 N LEU C 513 SHEET 4 AA8 4 GLU C 531 ASN C 534 -1 N TYR C 532 O LEU C 539 SHEET 1 AA9 3 VAL A 259 THR A 260 0 SHEET 2 AA9 3 SER A 304 LEU A 306 -1 O LEU A 306 N VAL A 259 SHEET 3 AA9 3 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AB1 3 ASN A 276 TYR A 278 0 SHEET 2 AB1 3 GLU A 318 LYS A 322 -1 O LYS A 322 N ASN A 276 SHEET 3 AB1 3 ILE A 336 SER A 337 -1 O ILE A 336 N TYR A 319 SHEET 1 AB2 2 GLU A 293 GLU A 294 0 SHEET 2 AB2 2 TYR A 300 ARG A 301 -1 O ARG A 301 N GLU A 293 SHEET 1 AB3 4 GLN A 347 LEU A 351 0 SHEET 2 AB3 4 VAL A 363 PHE A 372 -1 O LYS A 370 N GLN A 347 SHEET 3 AB3 4 PHE A 404 VAL A 412 -1 O LEU A 406 N VAL A 369 SHEET 4 AB3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AB4 3 GLU A 380 SER A 383 0 SHEET 2 AB4 3 PHE A 423 SER A 426 -1 O SER A 426 N GLU A 380 SHEET 3 AB4 3 SER A 440 LEU A 441 -1 O LEU A 441 N PHE A 423 SSBOND 1 CYS C 4 CYS C 31 1555 1555 2.03 SSBOND 2 CYS C 140 CYS C 170 1555 1555 2.03 SSBOND 3 CYS C 173 CYS C 182 1555 1555 2.03 SSBOND 4 CYS C 177 CYS C 190 1555 1555 2.03 SSBOND 5 CYS C 202 CYS C 213 1555 1555 2.03 SSBOND 6 CYS C 214 CYS C 222 1555 1555 2.03 SSBOND 7 CYS C 218 CYS C 230 1555 1555 2.03 SSBOND 8 CYS C 246 CYS C 273 1555 1555 2.03 SSBOND 9 CYS C 277 CYS C 289 1555 1555 2.03 SSBOND 10 CYS C 293 CYS C 309 1555 1555 2.03 SSBOND 11 CYS C 320 CYS C 345 1555 1555 2.03 SSBOND 12 CYS C 453 CYS C 482 1555 1555 2.03 SSBOND 13 CYS C 489 CYS C 498 1555 1555 2.03 SSBOND 14 CYS C 509 CYS C 518 1555 1555 2.03 SSBOND 15 CYS C 522 CYS C 538 1555 1555 2.03 SSBOND 16 CYS A 261 CYS A 321 1555 1555 2.03 CISPEP 1 TYR A 373 PRO A 374 0 2.05 CRYST1 109.770 109.770 176.070 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009110 0.005260 0.000000 0.00000 SCALE2 0.000000 0.010519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005680 0.00000