data_5KWP # _entry.id 5KWP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KWP pdb_00005kwp 10.2210/pdb5kwp/pdb WWPDB D_1000222823 ? ? BMRB 30141 ? 10.13018/BMR30141 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-10-26 3 'Structure model' 1 2 2016-11-02 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Refinement description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_nmr_spectrometer 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_entry_details 11 5 'Structure model' pdbx_modification_feature 12 5 'Structure model' pdbx_nmr_refine # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity.pdbx_number_of_molecules' 5 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_pdbx_nmr_software.name' 7 4 'Structure model' '_pdbx_nmr_spectrometer.model' 8 5 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5KWP _pdbx_database_status.recvd_initial_deposition_date 2016-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 30141 unspecified PDB . 5KVN unspecified PDB . 5KWO unspecified PDB . 5KWX unspecified PDB . 5KWZ unspecified PDB . 5KX0 unspecified PDB . 5KX1 unspecified PDB . 5KX2 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Harvey, P.J.' 1 'Craik, D.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 538 _citation.language ? _citation.page_first 329 _citation.page_last 335 _citation.title 'Accurate de novo design of hyperstable constrained peptides.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature19791 _citation.pdbx_database_id_PubMed 27626386 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bhardwaj, G.' 1 ? primary 'Mulligan, V.K.' 2 ? primary 'Bahl, C.D.' 3 ? primary 'Gilmore, J.M.' 4 ? primary 'Harvey, P.J.' 5 ? primary 'Cheneval, O.' 6 ? primary 'Buchko, G.W.' 7 ? primary 'Pulavarti, S.V.' 8 ? primary 'Kaas, Q.' 9 ? primary 'Eletsky, A.' 10 ? primary 'Huang, P.S.' 11 ? primary 'Johnsen, W.A.' 12 ? primary 'Greisen, P.J.' 13 ? primary 'Rocklin, G.J.' 14 ? primary 'Song, Y.' 15 ? primary 'Linsky, T.W.' 16 ? primary 'Watkins, A.' 17 ? primary 'Rettie, S.A.' 18 ? primary 'Xu, X.' 19 ? primary 'Carter, L.P.' 20 ? primary 'Bonneau, R.' 21 ? primary 'Olson, J.M.' 22 ? primary 'Coutsias, E.' 23 ? primary 'Correnti, C.E.' 24 ? primary 'Szyperski, T.' 25 ? primary 'Craik, D.J.' 26 ? primary 'Baker, D.' 27 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Designed peptide NC_EEH_D2' _entity.formula_weight 2979.393 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'TCVEC(DAL)(DPR)VKVCRPDPEEARREAEERC(NH2)' _entity_poly.pdbx_seq_one_letter_code_can TCVECAPVKVCRPDPEEARREAEERCX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 CYS n 1 3 VAL n 1 4 GLU n 1 5 CYS n 1 6 DAL n 1 7 DPR n 1 8 VAL n 1 9 LYS n 1 10 VAL n 1 11 CYS n 1 12 ARG n 1 13 PRO n 1 14 ASP n 1 15 PRO n 1 16 GLU n 1 17 GLU n 1 18 ALA n 1 19 ARG n 1 20 ARG n 1 21 GLU n 1 22 ALA n 1 23 GLU n 1 24 GLU n 1 25 ARG n 1 26 CYS n 1 27 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 DAL 6 6 6 DAL DAL A . n A 1 7 DPR 7 7 7 DPR DPR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 NH2 27 27 27 NH2 NH2 A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KWP _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5KWP _struct.title 'NMR Solution Structure of Designed Peptide NC_EEH_D2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KWP _struct_keywords.text 'synthetic designed peptide, de novo protein' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5KWP _struct_ref.pdbx_db_accession 5KWP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KWP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5KWP _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 27 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 110 ? 1 MORE 0 ? 1 'SSA (A^2)' 2210 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 14 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 26 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 26 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 11 SG ? ? A CYS 2 A CYS 11 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 5 A CYS 26 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale both ? A CYS 5 C ? ? ? 1_555 A DAL 6 N ? ? A CYS 5 A DAL 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? A DAL 6 C ? ? ? 1_555 A DPR 7 N ? ? A DAL 6 A DPR 7 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale3 covale both ? A DPR 7 C ? ? ? 1_555 A VAL 8 N ? ? A DPR 7 A VAL 8 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale4 covale both ? A CYS 26 C ? ? ? 1_555 A NH2 27 N ? ? A CYS 26 A NH2 27 1_555 ? ? ? ? ? ? ? 1.306 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 27 ? CYS A 26 ? NH2 A 27 ? 1_555 CYS A 26 ? 1_555 . . CYS 11 NH2 None 'Terminal amidation' 2 CYS A 2 ? CYS A 11 ? CYS A 2 ? 1_555 CYS A 11 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 5 ? CYS A 26 ? CYS A 5 ? 1_555 CYS A 26 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 2 ? CYS A 5 ? CYS A 2 CYS A 5 AA1 2 VAL A 8 ? CYS A 11 ? VAL A 8 CYS A 11 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 10 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 10 # _pdbx_entry_details.entry_id 5KWP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 OE2 A GLU 4 ? ? HZ1 A LYS 9 ? ? 1.58 2 4 OE1 A GLU 16 ? ? HH21 A ARG 20 ? ? 1.60 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 9 ARG A 12 ? ? 0.082 'SIDE CHAIN' 2 11 ARG A 19 ? ? 0.095 'SIDE CHAIN' 3 14 ARG A 20 ? ? 0.074 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5KWP _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5KWP _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.0 mg/mL design peptide NC_EEH_D2, 90% H2O/10% D2O' '90% H2O/10% D2O' sample_1 solution ? 2 '1.0 mg/mL design peptide NC_EEH_D2, 100% D2O' '100% D2O' sample_2 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'design peptide NC_EEH_D2' 1.0 ? mg/mL 'natural abundance' 2 'design peptide NC_EEH_D2' 1.0 ? mg/mL 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 3.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 6 1 1 '2D 1H-1H NOESY' 1 isotropic 7 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 2 '2D 1H-13C HSQC' 1 isotropic 5 1 2 '2D ECOSY' 1 isotropic # _pdbx_nmr_refine.entry_id 5KWP _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin 2.1 'Bruker Biospin' 2 'chemical shift assignment' CcpNMR ? CCPN 3 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 4 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 DAL N N N N 71 DAL CA C N R 72 DAL CB C N N 73 DAL C C N N 74 DAL O O N N 75 DAL OXT O N N 76 DAL H H N N 77 DAL H2 H N N 78 DAL HA H N N 79 DAL HB1 H N N 80 DAL HB2 H N N 81 DAL HB3 H N N 82 DAL HXT H N N 83 DPR N N N N 84 DPR CA C N R 85 DPR CB C N N 86 DPR CG C N N 87 DPR CD C N N 88 DPR C C N N 89 DPR O O N N 90 DPR OXT O N N 91 DPR H H N N 92 DPR HA H N N 93 DPR HB2 H N N 94 DPR HB3 H N N 95 DPR HG2 H N N 96 DPR HG3 H N N 97 DPR HD2 H N N 98 DPR HD3 H N N 99 DPR HXT H N N 100 GLU N N N N 101 GLU CA C N S 102 GLU C C N N 103 GLU O O N N 104 GLU CB C N N 105 GLU CG C N N 106 GLU CD C N N 107 GLU OE1 O N N 108 GLU OE2 O N N 109 GLU OXT O N N 110 GLU H H N N 111 GLU H2 H N N 112 GLU HA H N N 113 GLU HB2 H N N 114 GLU HB3 H N N 115 GLU HG2 H N N 116 GLU HG3 H N N 117 GLU HE2 H N N 118 GLU HXT H N N 119 LYS N N N N 120 LYS CA C N S 121 LYS C C N N 122 LYS O O N N 123 LYS CB C N N 124 LYS CG C N N 125 LYS CD C N N 126 LYS CE C N N 127 LYS NZ N N N 128 LYS OXT O N N 129 LYS H H N N 130 LYS H2 H N N 131 LYS HA H N N 132 LYS HB2 H N N 133 LYS HB3 H N N 134 LYS HG2 H N N 135 LYS HG3 H N N 136 LYS HD2 H N N 137 LYS HD3 H N N 138 LYS HE2 H N N 139 LYS HE3 H N N 140 LYS HZ1 H N N 141 LYS HZ2 H N N 142 LYS HZ3 H N N 143 LYS HXT H N N 144 NH2 N N N N 145 NH2 HN1 H N N 146 NH2 HN2 H N N 147 PRO N N N N 148 PRO CA C N S 149 PRO C C N N 150 PRO O O N N 151 PRO CB C N N 152 PRO CG C N N 153 PRO CD C N N 154 PRO OXT O N N 155 PRO H H N N 156 PRO HA H N N 157 PRO HB2 H N N 158 PRO HB3 H N N 159 PRO HG2 H N N 160 PRO HG3 H N N 161 PRO HD2 H N N 162 PRO HD3 H N N 163 PRO HXT H N N 164 THR N N N N 165 THR CA C N S 166 THR C C N N 167 THR O O N N 168 THR CB C N R 169 THR OG1 O N N 170 THR CG2 C N N 171 THR OXT O N N 172 THR H H N N 173 THR H2 H N N 174 THR HA H N N 175 THR HB H N N 176 THR HG1 H N N 177 THR HG21 H N N 178 THR HG22 H N N 179 THR HG23 H N N 180 THR HXT H N N 181 VAL N N N N 182 VAL CA C N S 183 VAL C C N N 184 VAL O O N N 185 VAL CB C N N 186 VAL CG1 C N N 187 VAL CG2 C N N 188 VAL OXT O N N 189 VAL H H N N 190 VAL H2 H N N 191 VAL HA H N N 192 VAL HB H N N 193 VAL HG11 H N N 194 VAL HG12 H N N 195 VAL HG13 H N N 196 VAL HG21 H N N 197 VAL HG22 H N N 198 VAL HG23 H N N 199 VAL HXT H N N 200 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 DAL N CA sing N N 67 DAL N H sing N N 68 DAL N H2 sing N N 69 DAL CA CB sing N N 70 DAL CA C sing N N 71 DAL CA HA sing N N 72 DAL CB HB1 sing N N 73 DAL CB HB2 sing N N 74 DAL CB HB3 sing N N 75 DAL C O doub N N 76 DAL C OXT sing N N 77 DAL OXT HXT sing N N 78 DPR N CA sing N N 79 DPR N CD sing N N 80 DPR N H sing N N 81 DPR CA CB sing N N 82 DPR CA C sing N N 83 DPR CA HA sing N N 84 DPR CB CG sing N N 85 DPR CB HB2 sing N N 86 DPR CB HB3 sing N N 87 DPR CG CD sing N N 88 DPR CG HG2 sing N N 89 DPR CG HG3 sing N N 90 DPR CD HD2 sing N N 91 DPR CD HD3 sing N N 92 DPR C O doub N N 93 DPR C OXT sing N N 94 DPR OXT HXT sing N N 95 GLU N CA sing N N 96 GLU N H sing N N 97 GLU N H2 sing N N 98 GLU CA C sing N N 99 GLU CA CB sing N N 100 GLU CA HA sing N N 101 GLU C O doub N N 102 GLU C OXT sing N N 103 GLU CB CG sing N N 104 GLU CB HB2 sing N N 105 GLU CB HB3 sing N N 106 GLU CG CD sing N N 107 GLU CG HG2 sing N N 108 GLU CG HG3 sing N N 109 GLU CD OE1 doub N N 110 GLU CD OE2 sing N N 111 GLU OE2 HE2 sing N N 112 GLU OXT HXT sing N N 113 LYS N CA sing N N 114 LYS N H sing N N 115 LYS N H2 sing N N 116 LYS CA C sing N N 117 LYS CA CB sing N N 118 LYS CA HA sing N N 119 LYS C O doub N N 120 LYS C OXT sing N N 121 LYS CB CG sing N N 122 LYS CB HB2 sing N N 123 LYS CB HB3 sing N N 124 LYS CG CD sing N N 125 LYS CG HG2 sing N N 126 LYS CG HG3 sing N N 127 LYS CD CE sing N N 128 LYS CD HD2 sing N N 129 LYS CD HD3 sing N N 130 LYS CE NZ sing N N 131 LYS CE HE2 sing N N 132 LYS CE HE3 sing N N 133 LYS NZ HZ1 sing N N 134 LYS NZ HZ2 sing N N 135 LYS NZ HZ3 sing N N 136 LYS OXT HXT sing N N 137 NH2 N HN1 sing N N 138 NH2 N HN2 sing N N 139 PRO N CA sing N N 140 PRO N CD sing N N 141 PRO N H sing N N 142 PRO CA C sing N N 143 PRO CA CB sing N N 144 PRO CA HA sing N N 145 PRO C O doub N N 146 PRO C OXT sing N N 147 PRO CB CG sing N N 148 PRO CB HB2 sing N N 149 PRO CB HB3 sing N N 150 PRO CG CD sing N N 151 PRO CG HG2 sing N N 152 PRO CG HG3 sing N N 153 PRO CD HD2 sing N N 154 PRO CD HD3 sing N N 155 PRO OXT HXT sing N N 156 THR N CA sing N N 157 THR N H sing N N 158 THR N H2 sing N N 159 THR CA C sing N N 160 THR CA CB sing N N 161 THR CA HA sing N N 162 THR C O doub N N 163 THR C OXT sing N N 164 THR CB OG1 sing N N 165 THR CB CG2 sing N N 166 THR CB HB sing N N 167 THR OG1 HG1 sing N N 168 THR CG2 HG21 sing N N 169 THR CG2 HG22 sing N N 170 THR CG2 HG23 sing N N 171 THR OXT HXT sing N N 172 VAL N CA sing N N 173 VAL N H sing N N 174 VAL N H2 sing N N 175 VAL CA C sing N N 176 VAL CA CB sing N N 177 VAL CA HA sing N N 178 VAL C O doub N N 179 VAL C OXT sing N N 180 VAL CB CG1 sing N N 181 VAL CB CG2 sing N N 182 VAL CB HB sing N N 183 VAL CG1 HG11 sing N N 184 VAL CG1 HG12 sing N N 185 VAL CG1 HG13 sing N N 186 VAL CG2 HG21 sing N N 187 VAL CG2 HG22 sing N N 188 VAL CG2 HG23 sing N N 189 VAL OXT HXT sing N N 190 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 5KWP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_