HEADER DE NOVO PROTEIN 18-JUL-16 5KWP TITLE NMR SOLUTION STRUCTURE OF DESIGNED PEPTIDE NC_EEH_D2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PEPTIDE NC_EEH_D2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS SYNTHETIC DESIGNED PEPTIDE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.J.HARVEY,D.J.CRAIK REVDAT 5 20-NOV-24 5KWP 1 REMARK REVDAT 4 14-JUN-23 5KWP 1 COMPND JRNL REMARK REVDAT 3 02-NOV-16 5KWP 1 JRNL REVDAT 2 26-OCT-16 5KWP 1 JRNL REVDAT 1 21-SEP-16 5KWP 0 JRNL AUTH G.BHARDWAJ,V.K.MULLIGAN,C.D.BAHL,J.M.GILMORE,P.J.HARVEY, JRNL AUTH 2 O.CHENEVAL,G.W.BUCHKO,S.V.PULAVARTI,Q.KAAS,A.ELETSKY, JRNL AUTH 3 P.S.HUANG,W.A.JOHNSEN,P.J.GREISEN,G.J.ROCKLIN,Y.SONG, JRNL AUTH 4 T.W.LINSKY,A.WATKINS,S.A.RETTIE,X.XU,L.P.CARTER,R.BONNEAU, JRNL AUTH 5 J.M.OLSON,E.COUTSIAS,C.E.CORRENTI,T.SZYPERSKI,D.J.CRAIK, JRNL AUTH 6 D.BAKER JRNL TITL ACCURATE DE NOVO DESIGN OF HYPERSTABLE CONSTRAINED PEPTIDES. JRNL REF NATURE V. 538 329 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27626386 JRNL DOI 10.1038/NATURE19791 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000222823. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MG/ML DESIGN PEPTIDE REMARK 210 NC_EEH_D2, 90% H2O/10% D2O; 1.0 REMARK 210 MG/ML DESIGN PEPTIDE NC_EEH_D2, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CCPNMR, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 12 0.08 SIDE CHAIN REMARK 500 11 ARG A 19 0.10 SIDE CHAIN REMARK 500 14 ARG A 20 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30141 RELATED DB: BMRB REMARK 900 RELATED ID: 5KVN RELATED DB: PDB REMARK 900 RELATED ID: 5KWO RELATED DB: PDB REMARK 900 RELATED ID: 5KWX RELATED DB: PDB REMARK 900 RELATED ID: 5KWZ RELATED DB: PDB REMARK 900 RELATED ID: 5KX0 RELATED DB: PDB REMARK 900 RELATED ID: 5KX1 RELATED DB: PDB REMARK 900 RELATED ID: 5KX2 RELATED DB: PDB DBREF 5KWP A 1 27 PDB 5KWP 5KWP 1 27 SEQRES 1 A 27 THR CYS VAL GLU CYS DAL DPR VAL LYS VAL CYS ARG PRO SEQRES 2 A 27 ASP PRO GLU GLU ALA ARG ARG GLU ALA GLU GLU ARG CYS SEQRES 3 A 27 NH2 HET DAL A 6 10 HET DPR A 7 14 HET NH2 A 27 3 HETNAM DAL D-ALANINE HETNAM DPR D-PROLINE HETNAM NH2 AMINO GROUP FORMUL 1 DAL C3 H7 N O2 FORMUL 1 DPR C5 H9 N O2 FORMUL 1 NH2 H2 N HELIX 1 AA1 ASP A 14 CYS A 26 1 13 SHEET 1 AA1 2 CYS A 2 CYS A 5 0 SHEET 2 AA1 2 VAL A 8 CYS A 11 -1 O VAL A 10 N VAL A 3 SSBOND 1 CYS A 2 CYS A 11 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 26 1555 1555 2.03 LINK C CYS A 5 N DAL A 6 1555 1555 1.32 LINK C DAL A 6 N DPR A 7 1555 1555 1.37 LINK C DPR A 7 N VAL A 8 1555 1555 1.32 LINK C CYS A 26 N NH2 A 27 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 22 151 CONECT 60 68 CONECT 63 392 CONECT 68 60 69 73 CONECT 69 68 70 71 74 CONECT 70 69 75 76 77 CONECT 71 69 72 78 CONECT 72 71 CONECT 73 68 CONECT 74 69 CONECT 75 70 CONECT 76 70 CONECT 77 70 CONECT 78 71 79 82 CONECT 79 78 80 83 85 CONECT 80 79 81 86 87 CONECT 81 80 82 88 89 CONECT 82 78 81 90 91 CONECT 83 79 84 92 CONECT 84 83 CONECT 85 79 CONECT 86 80 CONECT 87 80 CONECT 88 81 CONECT 89 81 CONECT 90 82 CONECT 91 82 CONECT 92 83 CONECT 151 22 CONECT 389 397 CONECT 392 63 CONECT 397 389 398 399 CONECT 398 397 CONECT 399 397 MASTER 106 0 3 1 2 0 0 6 204 1 34 3 END