HEADER DE NOVO PROTEIN 19-JUL-16 5KX0 TITLE NMR SOLUTION STRUCTURE OF DESIGNED PEPTIDE NC_CHH_DL_D1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PEPTIDE NC_CHH_DL_D1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DESIGNED PEPTIDE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.J.HARVEY,D.J.CRAIK REVDAT 5 16-OCT-24 5KX0 1 REMARK REVDAT 4 14-JUN-23 5KX0 1 COMPND JRNL REMARK LINK REVDAT 3 02-NOV-16 5KX0 1 JRNL REVDAT 2 26-OCT-16 5KX0 1 JRNL REVDAT 1 21-SEP-16 5KX0 0 JRNL AUTH G.BHARDWAJ,V.K.MULLIGAN,C.D.BAHL,J.M.GILMORE,P.J.HARVEY, JRNL AUTH 2 O.CHENEVAL,G.W.BUCHKO,S.V.PULAVARTI,Q.KAAS,A.ELETSKY, JRNL AUTH 3 P.S.HUANG,W.A.JOHNSEN,P.J.GREISEN,G.J.ROCKLIN,Y.SONG, JRNL AUTH 4 T.W.LINSKY,A.WATKINS,S.A.RETTIE,X.XU,L.P.CARTER,R.BONNEAU, JRNL AUTH 5 J.M.OLSON,E.COUTSIAS,C.E.CORRENTI,T.SZYPERSKI,D.J.CRAIK, JRNL AUTH 6 D.BAKER JRNL TITL ACCURATE DE NOVO DESIGN OF HYPERSTABLE CONSTRAINED PEPTIDES. JRNL REF NATURE V. 538 329 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27626386 JRNL DOI 10.1038/NATURE19791 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222832. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MG/ML DESIGN PEPTIDE REMARK 210 NC_CHH_DL_D1, 90% H2O/10% D2O; REMARK 210 1.0 MG/ML DESIGN PEPTIDE NC_CHH_ REMARK 210 DL_D1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CCPNMR, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 15 DGL A 24 63.32 90.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30144 RELATED DB: BMRB REMARK 900 RELATED ID: 5KVN RELATED DB: PDB REMARK 900 RELATED ID: 5KWO RELATED DB: PDB REMARK 900 RELATED ID: 5KWX RELATED DB: PDB REMARK 900 RELATED ID: 5KWZ RELATED DB: PDB REMARK 900 RELATED ID: 5KWP RELATED DB: PDB REMARK 900 RELATED ID: 5KX1 RELATED DB: PDB REMARK 900 RELATED ID: 5KX2 RELATED DB: PDB DBREF 5KX0 A 1 26 PDB 5KX0 5KX0 1 26 SEQRES 1 A 26 ASN PRO GLU LEU GLN ARG LYS CYS LYS GLU LEU DAS THR SEQRES 2 A 26 ARG DPR DGL DAL DGL DAR DLY DCY DAR DGL DGL SER ASP HET DAS A 12 12 HET DPR A 15 14 HET DGL A 16 15 HET DAL A 17 10 HET DGL A 18 15 HET DAR A 19 24 HET DLY A 20 22 HET DCY A 21 10 HET DAR A 22 24 HET DGL A 23 15 HET DGL A 24 15 HETNAM DAS D-ASPARTIC ACID HETNAM DPR D-PROLINE HETNAM DGL D-GLUTAMIC ACID HETNAM DAL D-ALANINE HETNAM DAR D-ARGININE HETNAM DLY D-LYSINE HETNAM DCY D-CYSTEINE FORMUL 1 DAS C4 H7 N O4 FORMUL 1 DPR C5 H9 N O2 FORMUL 1 DGL 4(C5 H9 N O4) FORMUL 1 DAL C3 H7 N O2 FORMUL 1 DAR 2(C6 H15 N4 O2 1+) FORMUL 1 DLY C6 H14 N2 O2 FORMUL 1 DCY C3 H7 N O2 S HELIX 1 AA1 ASN A 1 DAS A 12 1 12 HELIX 2 AA2 DPR A 15 SER A 25 1 11 SSBOND 1 CYS A 8 DCY A 21 1555 1555 2.01 LINK N ASN A 1 C ASP A 26 1555 1555 1.33 LINK C LEU A 11 N DAS A 12 1555 1555 1.31 LINK C DAS A 12 N THR A 13 1555 1555 1.29 LINK C ARG A 14 N DPR A 15 1555 1555 1.36 LINK C DPR A 15 N DGL A 16 1555 1555 1.31 LINK C DGL A 16 N DAL A 17 1555 1555 1.33 LINK C DAL A 17 N DGL A 18 1555 1555 1.34 LINK C DGL A 18 N DAR A 19 1555 1555 1.32 LINK C DAR A 19 N DLY A 20 1555 1555 1.33 LINK C DLY A 20 N DCY A 21 1555 1555 1.33 LINK C DCY A 21 N DAR A 22 1555 1555 1.32 LINK C DAR A 22 N DGL A 23 1555 1555 1.32 LINK C DGL A 23 N DGL A 24 1555 1555 1.32 LINK C DGL A 24 N SER A 25 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 1 419 CONECT 131 347 CONECT 175 192 CONECT 192 175 193 200 CONECT 193 192 194 196 201 CONECT 194 193 195 204 CONECT 195 194 CONECT 196 193 197 202 203 CONECT 197 196 198 199 CONECT 198 197 CONECT 199 197 CONECT 200 192 CONECT 201 193 CONECT 202 196 CONECT 203 196 CONECT 204 194 CONECT 220 242 CONECT 242 220 243 246 CONECT 243 242 244 247 249 CONECT 244 243 245 250 251 CONECT 245 244 246 252 253 CONECT 246 242 245 254 255 CONECT 247 243 248 256 CONECT 248 247 CONECT 249 243 CONECT 250 244 CONECT 251 244 CONECT 252 245 CONECT 253 245 CONECT 254 246 CONECT 255 246 CONECT 256 247 257 265 CONECT 257 256 258 260 266 CONECT 258 257 259 271 CONECT 259 258 CONECT 260 257 261 267 268 CONECT 261 260 262 269 270 CONECT 262 261 263 264 CONECT 263 262 CONECT 264 262 CONECT 265 256 CONECT 266 257 CONECT 267 260 CONECT 268 260 CONECT 269 261 CONECT 270 261 CONECT 271 258 272 276 CONECT 272 271 273 274 277 CONECT 273 272 278 279 280 CONECT 274 272 275 281 CONECT 275 274 CONECT 276 271 CONECT 277 272 CONECT 278 273 CONECT 279 273 CONECT 280 273 CONECT 281 274 282 290 CONECT 282 281 283 285 291 CONECT 283 282 284 296 CONECT 284 283 CONECT 285 282 286 292 293 CONECT 286 285 287 294 295 CONECT 287 286 288 289 CONECT 288 287 CONECT 289 287 CONECT 290 281 CONECT 291 282 CONECT 292 285 CONECT 293 285 CONECT 294 286 CONECT 295 286 CONECT 296 283 297 307 CONECT 297 296 298 305 308 CONECT 298 297 299 309 310 CONECT 299 298 300 311 312 CONECT 300 299 301 313 314 CONECT 301 300 302 315 CONECT 302 301 303 304 CONECT 303 302 316 317 CONECT 304 302 318 319 CONECT 305 297 306 320 CONECT 306 305 CONECT 307 296 CONECT 308 297 CONECT 309 298 CONECT 310 298 CONECT 311 299 CONECT 312 299 CONECT 313 300 CONECT 314 300 CONECT 315 301 CONECT 316 303 CONECT 317 303 CONECT 318 304 CONECT 319 304 CONECT 320 305 321 329 CONECT 321 320 322 324 330 CONECT 322 321 323 342 CONECT 323 322 CONECT 324 321 325 331 332 CONECT 325 324 326 333 334 CONECT 326 325 327 335 336 CONECT 327 326 328 337 338 CONECT 328 327 339 340 CONECT 329 320 CONECT 330 321 CONECT 331 324 CONECT 332 324 CONECT 333 325 CONECT 334 325 CONECT 335 326 CONECT 336 326 CONECT 337 327 CONECT 338 327 CONECT 339 328 CONECT 340 328 CONECT 342 322 343 348 CONECT 343 342 344 346 349 CONECT 344 343 345 352 CONECT 345 344 CONECT 346 343 347 350 351 CONECT 347 131 346 CONECT 348 342 CONECT 349 343 CONECT 350 346 CONECT 351 346 CONECT 352 344 353 363 CONECT 353 352 354 361 364 CONECT 354 353 355 365 366 CONECT 355 354 356 367 368 CONECT 356 355 357 369 370 CONECT 357 356 358 371 CONECT 358 357 359 360 CONECT 359 358 372 373 CONECT 360 358 374 375 CONECT 361 353 362 376 CONECT 362 361 CONECT 363 352 CONECT 364 353 CONECT 365 354 CONECT 366 354 CONECT 367 355 CONECT 368 355 CONECT 369 356 CONECT 370 356 CONECT 371 357 CONECT 372 359 CONECT 373 359 CONECT 374 360 CONECT 375 360 CONECT 376 361 377 385 CONECT 377 376 378 380 386 CONECT 378 377 379 391 CONECT 379 378 CONECT 380 377 381 387 388 CONECT 381 380 382 389 390 CONECT 382 381 383 384 CONECT 383 382 CONECT 384 382 CONECT 385 376 CONECT 386 377 CONECT 387 380 CONECT 388 380 CONECT 389 381 CONECT 390 381 CONECT 391 378 392 400 CONECT 392 391 393 395 401 CONECT 393 392 394 406 CONECT 394 393 CONECT 395 392 396 402 403 CONECT 396 395 397 404 405 CONECT 397 396 398 399 CONECT 398 397 CONECT 399 397 CONECT 400 391 CONECT 401 392 CONECT 402 395 CONECT 403 395 CONECT 404 396 CONECT 405 396 CONECT 406 393 CONECT 419 1 MASTER 102 0 11 2 0 0 0 6 218 1 182 2 END