data_5KX9 # _entry.id 5KX9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KX9 pdb_00005kx9 10.2210/pdb5kx9/pdb WWPDB D_1000222854 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KX9 _pdbx_database_status.recvd_initial_deposition_date 2016-07-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Fischmann, T.O.' _audit_author.pdbx_ordinal 1 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'Rna Biol.' ? ? 1555-8584 ? ? 13 ? 946 954 'Atomic resolution mechanistic studies of ribocil: A highly selective unnatural ligand mimic of the E. coli FMN riboswitch.' 2016 ? 10.1080/15476286.2016.1216304 27485612 ? ? ? ? ? ? ? ? UK ? ? 1 Nature NATUAS 0006 1476-4687 ? ? 526 ? 672 677 'Selective small-molecule inhibition of an RNA structural element.' 2015 ? 10.1038/nature15542 26416753 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Howe, J.A.' 1 ? primary 'Xiao, L.' 2 ? primary 'Fischmann, T.O.' 3 ? primary 'Wang, H.' 4 ? primary 'Tang, H.' 5 ? primary 'Villafania, A.' 6 ? primary 'Zhang, R.' 7 ? primary 'Barbieri, C.M.' 8 ? primary 'Roemer, T.' 9 ? 1 'Howe, J.A.' 10 ? 1 'Wang, H.' 11 ? 1 'Fischmann, T.O.' 12 ? 1 'Balibar, C.J.' 13 ? 1 'Xiao, L.' 14 ? 1 'Galgoci, A.M.' 15 ? 1 'Malinverni, J.C.' 16 ? 1 'Mayhood, T.' 17 ? 1 'Villafania, A.' 18 ? 1 'Nahvi, A.' 19 ? 1 'Murgolo, N.' 20 ? 1 'Barbieri, C.M.' 21 ? 1 'Mann, P.A.' 22 ? 1 'Carr, D.' 23 ? 1 'Xia, E.' 24 ? 1 'Zuck, P.' 25 ? 1 'Riley, D.' 26 ? 1 'Painter, R.E.' 27 ? 1 'Walker, S.S.' 28 ? 1 'Sherborne, B.' 29 ? 1 'de Jesus, R.' 30 ? 1 'Pan, W.' 31 ? 1 'Plotkin, M.A.' 32 ? 1 'Wu, J.' 33 ? 1 'Rindgen, D.' 34 ? 1 'Cummings, J.' 35 ? 1 'Garlisi, C.G.' 36 ? 1 'Zhang, R.' 37 ? 1 'Sheth, P.R.' 38 ? 1 'Gill, C.J.' 39 ? 1 'Tang, H.' 40 ? 1 'Roemer, T.' 41 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5KX9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.280 _cell.length_a_esd ? _cell.length_b 71.280 _cell.length_b_esd ? _cell.length_c 138.930 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN Riboswitch' 17455.389 1 ? ? ? ? 2 polymer syn 'FMN Riboswitch' 18092.771 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 7 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 non-polymer syn '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' 383.467 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ? 2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 GB LN831027.1 777193512 ? 1 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU 2158096 2 GB LN831027.1 777193512 ? 2 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA 2158150 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KX9 X 3 ? 54 ? 777193512 2158096 ? 2158147 ? 3 54 2 2 5KX9 Y 1 ? 53 ? 777193512 2158150 ? 2158202 ? 57 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KX9 G X 1 ? GB 777193512 ? ? insertion 1 1 1 5KX9 G X 2 ? GB 777193512 ? ? insertion 2 2 2 5KX9 U Y 54 ? GB 777193512 ? ? insertion 110 3 2 5KX9 U Y 55 ? GB 777193512 ? ? insertion 111 4 2 5KX9 C Y 56 ? GB 777193512 ? ? insertion 112 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6YG non-polymer . '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' ? 'C19 H21 N5 O2 S' 383.467 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KX9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M NA ACETATE, PH 5.0, 0.2 M MGCL2, 7 TO 11% V/V PEG 4K' _exptl_crystal_grow.pdbx_pH_range 4.5-6.8 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-09-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 101.72 _reflns.entry_id 5KX9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 46.03 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9428 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.3 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.86 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.799 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 3.5062 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 3.5062 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -7.0124 _refine.B_iso_max ? _refine.B_iso_mean 98.93 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.9366 _refine.correlation_coeff_Fo_to_Fc_free 0.9069 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KX9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 37.04 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9425 _refine.ls_number_reflns_R_free 458 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.89 _refine.ls_percent_reflns_R_free 4.86 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2177 _refine.ls_R_factor_R_free 0.2511 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2160 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 5C45 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.378 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5KX9 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.477 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2321 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2359 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 37.04 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2628 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 0.76 ? 4090 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 546 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 110 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2628 ? t_it 20.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1 ? t_nbd 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 24.20 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 432 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2622 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.24 _refine_ls_shell.number_reflns_all 2660 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 134 _refine_ls_shell.number_reflns_R_work 2526 _refine_ls_shell.percent_reflns_obs 98.89 _refine_ls_shell.percent_reflns_R_free 5.04 _refine_ls_shell.R_factor_all 0.2629 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3088 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2607 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5KX9 _struct.title 'Selective Small Molecule Inhibition of the FMN Riboswitch' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KX9 _struct_keywords.text 'RNA, TRANSLATION, RNA-inhibitor complex' _struct_keywords.pdbx_keywords RNA/inhibitor # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 4 ? L N N 4 ? M N N 3 ? N N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 D K . K ? ? X A 14 X K 102 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc2 metalc ? ? A G 16 OP2 ? ? ? 1_555 E K . K ? ? X G 16 X K 103 1_555 ? ? ? ? ? ? ? 3.458 ? ? metalc3 metalc ? ? A A 22 OP1 ? ? ? 1_555 I MG . MG ? ? X A 22 X MG 107 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc4 metalc ? ? A U 23 OP2 ? ? ? 1_555 I MG . MG ? ? X U 23 X MG 107 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc5 metalc ? ? A G 28 O6 ? ? ? 1_555 H K . K ? ? X G 28 X K 106 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc6 metalc ? ? A A 40 "O2'" ? ? ? 1_555 C K . K ? ? X A 40 X K 101 1_555 ? ? ? ? ? ? ? 3.416 ? ? metalc7 metalc ? ? B U 33 O4 ? ? ? 1_555 K MG . MG ? ? Y U 89 Y MG 201 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc8 metalc ? ? B A 36 OP2 ? ? ? 1_555 K MG . MG ? ? Y A 92 Y MG 201 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc9 metalc ? ? B C 39 OP1 ? ? ? 1_555 N MG . MG ? ? Y C 95 Y MG 204 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc10 metalc ? ? B G 41 O6 ? ? ? 1_555 M K . K ? ? Y G 97 Y K 203 1_555 ? ? ? ? ? ? ? 3.453 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog27 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog39 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog41 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog57 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog66 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog68 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog69 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog86 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog99 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog101 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog102 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog111 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X K 101 ? 1 'binding site for residue K X 101' AC2 Software X K 102 ? 1 'binding site for residue K X 102' AC3 Software X K 103 ? 1 'binding site for residue K X 103' AC4 Software X K 106 ? 1 'binding site for residue K X 106' AC5 Software X MG 107 ? 2 'binding site for residue MG X 107' AC6 Software X 6YG 108 ? 8 'binding site for residue 6YG X 108' AC7 Software Y MG 201 ? 2 'binding site for residue MG Y 201' AC8 Software Y MG 202 ? 1 'binding site for residue MG Y 202' AC9 Software Y K 203 ? 1 'binding site for residue K Y 203' AD1 Software Y MG 204 ? 1 'binding site for residue MG Y 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 A A 40 ? A X 40 . ? 1_555 ? 2 AC2 1 A A 14 ? A X 14 . ? 1_555 ? 3 AC3 1 G A 16 ? G X 16 . ? 1_555 ? 4 AC4 1 G A 28 ? G X 28 . ? 1_555 ? 5 AC5 2 A A 22 ? A X 22 . ? 1_555 ? 6 AC5 2 U A 23 ? U X 23 . ? 1_555 ? 7 AC6 8 G A 11 ? G X 11 . ? 1_555 ? 8 AC6 8 A A 48 ? A X 48 . ? 1_555 ? 9 AC6 8 A A 49 ? A X 49 . ? 1_555 ? 10 AC6 8 U B 5 ? U Y 61 . ? 1_555 ? 11 AC6 8 G B 6 ? G Y 62 . ? 1_555 ? 12 AC6 8 G B 28 ? G Y 84 . ? 1_555 ? 13 AC6 8 A B 29 ? A Y 85 . ? 1_555 ? 14 AC6 8 A B 43 ? A Y 99 . ? 1_555 ? 15 AC7 2 U B 33 ? U Y 89 . ? 1_555 ? 16 AC7 2 A B 36 ? A Y 92 . ? 1_555 ? 17 AC8 1 G B 12 ? G Y 68 . ? 1_555 ? 18 AC9 1 G B 41 ? G Y 97 . ? 1_555 ? 19 AD1 1 C B 39 ? C Y 95 . ? 1_555 ? # _atom_sites.entry_id 5KX9 _atom_sites.fract_transf_matrix[1][1] 0.014029 _atom_sites.fract_transf_matrix[1][2] 0.008100 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016200 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007198 _atom_sites.fract_transf_vector[1] -0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] -0.00000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 ? ? ? X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K 1 101 300 K K X . D 3 K 1 102 306 K K X . E 3 K 1 103 307 K K X . F 3 K 1 104 311 K K X . G 3 K 1 105 312 K K X . H 3 K 1 106 320 K K X . I 4 MG 1 107 321 MG MG X . J 5 6YG 1 108 1 6YG SCH X . K 4 MG 1 201 305 MG MG Y . L 4 MG 1 202 309 MG MG Y . M 3 K 1 203 310 K K Y . N 4 MG 1 204 311 MG MG Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7800 ? 1 MORE -56 ? 1 'SSA (A^2)' 15830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 22 ? X A 22 ? 1_555 MG ? I MG . ? X MG 107 ? 1_555 OP2 ? A U 23 ? X U 23 ? 1_555 84.0 ? 2 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? K MG . ? Y MG 201 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 97.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-24 2 'Structure model' 1 1 2016-09-14 3 'Structure model' 1 2 2016-10-19 4 'Structure model' 1 3 2023-02-22 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' ndb_struct_na_base_pair 5 4 'Structure model' ndb_struct_na_base_pair_step 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_conn 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.11.5 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? 0.1.27 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X U 53 ? "C4'" ? A U 53 "C4'" 2 1 Y 1 X U 53 ? "O4'" ? A U 53 "O4'" 3 1 Y 1 X U 53 ? "C3'" ? A U 53 "C3'" 4 1 Y 1 X U 53 ? "O3'" ? A U 53 "O3'" 5 1 Y 1 X U 53 ? "C2'" ? A U 53 "C2'" 6 1 Y 1 X U 53 ? "O2'" ? A U 53 "O2'" 7 1 Y 1 X U 53 ? "C1'" ? A U 53 "C1'" 8 1 Y 1 X U 53 ? N1 ? A U 53 N1 9 1 Y 1 X U 53 ? C2 ? A U 53 C2 10 1 Y 1 X U 53 ? O2 ? A U 53 O2 11 1 Y 1 X U 53 ? N3 ? A U 53 N3 12 1 Y 1 X U 53 ? C4 ? A U 53 C4 13 1 Y 1 X U 53 ? O4 ? A U 53 O4 14 1 Y 1 X U 53 ? C5 ? A U 53 C5 15 1 Y 1 X U 53 ? C6 ? A U 53 C6 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 54 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6YG N01 N Y N 1 6YG C02 C Y N 2 6YG N03 N Y N 3 6YG C04 C Y N 4 6YG C05 C Y N 5 6YG C06 C Y N 6 6YG O07 O N N 7 6YG C08 C N S 8 6YG C09 C N N 9 6YG N10 N N N 10 6YG C11 C N N 11 6YG C12 C N N 12 6YG C13 C N N 13 6YG C14 C Y N 14 6YG S15 S Y N 15 6YG C16 C Y N 16 6YG C17 C Y N 17 6YG C18 C Y N 18 6YG C19 C N N 19 6YG C20 C Y N 20 6YG C21 C Y N 21 6YG N22 N Y N 22 6YG C23 C Y N 23 6YG N24 N Y N 24 6YG C25 C Y N 25 6YG O26 O N N 26 6YG C27 C N N 27 6YG H1 H N N 28 6YG H3 H N N 29 6YG H4 H N N 30 6YG H5 H N N 31 6YG H7 H N N 32 6YG H8 H N N 33 6YG H9 H N N 34 6YG H10 H N N 35 6YG H11 H N N 36 6YG H12 H N N 37 6YG H13 H N N 38 6YG H14 H N N 39 6YG H15 H N N 40 6YG H16 H N N 41 6YG H17 H N N 42 6YG H18 H N N 43 6YG H19 H N N 44 6YG H20 H N N 45 6YG H21 H N N 46 6YG H22 H N N 47 6YG H2 H N N 48 A OP3 O N N 49 A P P N N 50 A OP1 O N N 51 A OP2 O N N 52 A "O5'" O N N 53 A "C5'" C N N 54 A "C4'" C N R 55 A "O4'" O N N 56 A "C3'" C N S 57 A "O3'" O N N 58 A "C2'" C N R 59 A "O2'" O N N 60 A "C1'" C N R 61 A N9 N Y N 62 A C8 C Y N 63 A N7 N Y N 64 A C5 C Y N 65 A C6 C Y N 66 A N6 N N N 67 A N1 N Y N 68 A C2 C Y N 69 A N3 N Y N 70 A C4 C Y N 71 A HOP3 H N N 72 A HOP2 H N N 73 A "H5'" H N N 74 A "H5''" H N N 75 A "H4'" H N N 76 A "H3'" H N N 77 A "HO3'" H N N 78 A "H2'" H N N 79 A "HO2'" H N N 80 A "H1'" H N N 81 A H8 H N N 82 A H61 H N N 83 A H62 H N N 84 A H2 H N N 85 C OP3 O N N 86 C P P N N 87 C OP1 O N N 88 C OP2 O N N 89 C "O5'" O N N 90 C "C5'" C N N 91 C "C4'" C N R 92 C "O4'" O N N 93 C "C3'" C N S 94 C "O3'" O N N 95 C "C2'" C N R 96 C "O2'" O N N 97 C "C1'" C N R 98 C N1 N N N 99 C C2 C N N 100 C O2 O N N 101 C N3 N N N 102 C C4 C N N 103 C N4 N N N 104 C C5 C N N 105 C C6 C N N 106 C HOP3 H N N 107 C HOP2 H N N 108 C "H5'" H N N 109 C "H5''" H N N 110 C "H4'" H N N 111 C "H3'" H N N 112 C "HO3'" H N N 113 C "H2'" H N N 114 C "HO2'" H N N 115 C "H1'" H N N 116 C H41 H N N 117 C H42 H N N 118 C H5 H N N 119 C H6 H N N 120 G OP3 O N N 121 G P P N N 122 G OP1 O N N 123 G OP2 O N N 124 G "O5'" O N N 125 G "C5'" C N N 126 G "C4'" C N R 127 G "O4'" O N N 128 G "C3'" C N S 129 G "O3'" O N N 130 G "C2'" C N R 131 G "O2'" O N N 132 G "C1'" C N R 133 G N9 N Y N 134 G C8 C Y N 135 G N7 N Y N 136 G C5 C Y N 137 G C6 C N N 138 G O6 O N N 139 G N1 N N N 140 G C2 C N N 141 G N2 N N N 142 G N3 N N N 143 G C4 C Y N 144 G HOP3 H N N 145 G HOP2 H N N 146 G "H5'" H N N 147 G "H5''" H N N 148 G "H4'" H N N 149 G "H3'" H N N 150 G "HO3'" H N N 151 G "H2'" H N N 152 G "HO2'" H N N 153 G "H1'" H N N 154 G H8 H N N 155 G H1 H N N 156 G H21 H N N 157 G H22 H N N 158 K K K N N 159 MG MG MG N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6YG C12 C11 sing N N 1 6YG C12 C13 sing N N 2 6YG C11 N10 sing N N 3 6YG C13 C08 sing N N 4 6YG N10 C19 sing N N 5 6YG N10 C09 sing N N 6 6YG C08 C09 sing N N 7 6YG C08 C02 sing N N 8 6YG C19 C20 sing N N 9 6YG N01 C02 doub Y N 10 6YG N01 C06 sing Y N 11 6YG C02 N03 sing Y N 12 6YG O07 C06 sing N N 13 6YG C06 C05 doub Y N 14 6YG C20 C25 doub Y N 15 6YG C20 C21 sing Y N 16 6YG N03 C04 doub Y N 17 6YG C25 N24 sing Y N 18 6YG C05 C04 sing Y N 19 6YG C21 N22 doub Y N 20 6YG C04 C14 sing N N 21 6YG N24 C23 doub Y N 22 6YG N22 C23 sing Y N 23 6YG C14 S15 sing Y N 24 6YG C14 C18 doub Y N 25 6YG C23 O26 sing N N 26 6YG S15 C16 sing Y N 27 6YG C18 C17 sing Y N 28 6YG O26 C27 sing N N 29 6YG C16 C17 doub Y N 30 6YG C05 H1 sing N N 31 6YG C08 H3 sing N N 32 6YG C09 H4 sing N N 33 6YG C09 H5 sing N N 34 6YG C11 H7 sing N N 35 6YG C11 H8 sing N N 36 6YG C12 H9 sing N N 37 6YG C12 H10 sing N N 38 6YG C13 H11 sing N N 39 6YG C13 H12 sing N N 40 6YG C16 H13 sing N N 41 6YG C17 H14 sing N N 42 6YG C18 H15 sing N N 43 6YG C19 H16 sing N N 44 6YG C19 H17 sing N N 45 6YG C21 H18 sing N N 46 6YG C25 H19 sing N N 47 6YG C27 H20 sing N N 48 6YG C27 H21 sing N N 49 6YG C27 H22 sing N N 50 6YG O07 H2 sing N N 51 A OP3 P sing N N 52 A OP3 HOP3 sing N N 53 A P OP1 doub N N 54 A P OP2 sing N N 55 A P "O5'" sing N N 56 A OP2 HOP2 sing N N 57 A "O5'" "C5'" sing N N 58 A "C5'" "C4'" sing N N 59 A "C5'" "H5'" sing N N 60 A "C5'" "H5''" sing N N 61 A "C4'" "O4'" sing N N 62 A "C4'" "C3'" sing N N 63 A "C4'" "H4'" sing N N 64 A "O4'" "C1'" sing N N 65 A "C3'" "O3'" sing N N 66 A "C3'" "C2'" sing N N 67 A "C3'" "H3'" sing N N 68 A "O3'" "HO3'" sing N N 69 A "C2'" "O2'" sing N N 70 A "C2'" "C1'" sing N N 71 A "C2'" "H2'" sing N N 72 A "O2'" "HO2'" sing N N 73 A "C1'" N9 sing N N 74 A "C1'" "H1'" sing N N 75 A N9 C8 sing Y N 76 A N9 C4 sing Y N 77 A C8 N7 doub Y N 78 A C8 H8 sing N N 79 A N7 C5 sing Y N 80 A C5 C6 sing Y N 81 A C5 C4 doub Y N 82 A C6 N6 sing N N 83 A C6 N1 doub Y N 84 A N6 H61 sing N N 85 A N6 H62 sing N N 86 A N1 C2 sing Y N 87 A C2 N3 doub Y N 88 A C2 H2 sing N N 89 A N3 C4 sing Y N 90 C OP3 P sing N N 91 C OP3 HOP3 sing N N 92 C P OP1 doub N N 93 C P OP2 sing N N 94 C P "O5'" sing N N 95 C OP2 HOP2 sing N N 96 C "O5'" "C5'" sing N N 97 C "C5'" "C4'" sing N N 98 C "C5'" "H5'" sing N N 99 C "C5'" "H5''" sing N N 100 C "C4'" "O4'" sing N N 101 C "C4'" "C3'" sing N N 102 C "C4'" "H4'" sing N N 103 C "O4'" "C1'" sing N N 104 C "C3'" "O3'" sing N N 105 C "C3'" "C2'" sing N N 106 C "C3'" "H3'" sing N N 107 C "O3'" "HO3'" sing N N 108 C "C2'" "O2'" sing N N 109 C "C2'" "C1'" sing N N 110 C "C2'" "H2'" sing N N 111 C "O2'" "HO2'" sing N N 112 C "C1'" N1 sing N N 113 C "C1'" "H1'" sing N N 114 C N1 C2 sing N N 115 C N1 C6 sing N N 116 C C2 O2 doub N N 117 C C2 N3 sing N N 118 C N3 C4 doub N N 119 C C4 N4 sing N N 120 C C4 C5 sing N N 121 C N4 H41 sing N N 122 C N4 H42 sing N N 123 C C5 C6 doub N N 124 C C5 H5 sing N N 125 C C6 H6 sing N N 126 G OP3 P sing N N 127 G OP3 HOP3 sing N N 128 G P OP1 doub N N 129 G P OP2 sing N N 130 G P "O5'" sing N N 131 G OP2 HOP2 sing N N 132 G "O5'" "C5'" sing N N 133 G "C5'" "C4'" sing N N 134 G "C5'" "H5'" sing N N 135 G "C5'" "H5''" sing N N 136 G "C4'" "O4'" sing N N 137 G "C4'" "C3'" sing N N 138 G "C4'" "H4'" sing N N 139 G "O4'" "C1'" sing N N 140 G "C3'" "O3'" sing N N 141 G "C3'" "C2'" sing N N 142 G "C3'" "H3'" sing N N 143 G "O3'" "HO3'" sing N N 144 G "C2'" "O2'" sing N N 145 G "C2'" "C1'" sing N N 146 G "C2'" "H2'" sing N N 147 G "O2'" "HO2'" sing N N 148 G "C1'" N9 sing N N 149 G "C1'" "H1'" sing N N 150 G N9 C8 sing Y N 151 G N9 C4 sing Y N 152 G C8 N7 doub Y N 153 G C8 H8 sing N N 154 G N7 C5 sing Y N 155 G C5 C6 sing N N 156 G C5 C4 doub Y N 157 G C6 O6 doub N N 158 G C6 N1 sing N N 159 G N1 C2 sing N N 160 G N1 H1 sing N N 161 G C2 N2 sing N N 162 G C2 N3 doub N N 163 G N2 H21 sing N N 164 G N2 H22 sing N N 165 G N3 C4 sing N N 166 U OP3 P sing N N 167 U OP3 HOP3 sing N N 168 U P OP1 doub N N 169 U P OP2 sing N N 170 U P "O5'" sing N N 171 U OP2 HOP2 sing N N 172 U "O5'" "C5'" sing N N 173 U "C5'" "C4'" sing N N 174 U "C5'" "H5'" sing N N 175 U "C5'" "H5''" sing N N 176 U "C4'" "O4'" sing N N 177 U "C4'" "C3'" sing N N 178 U "C4'" "H4'" sing N N 179 U "O4'" "C1'" sing N N 180 U "C3'" "O3'" sing N N 181 U "C3'" "C2'" sing N N 182 U "C3'" "H3'" sing N N 183 U "O3'" "HO3'" sing N N 184 U "C2'" "O2'" sing N N 185 U "C2'" "C1'" sing N N 186 U "C2'" "H2'" sing N N 187 U "O2'" "HO2'" sing N N 188 U "C1'" N1 sing N N 189 U "C1'" "H1'" sing N N 190 U N1 C2 sing N N 191 U N1 C6 sing N N 192 U C2 O2 doub N N 193 U C2 N3 sing N N 194 U N3 C4 sing N N 195 U N3 H3 sing N N 196 U C4 O4 doub N N 197 U C4 C5 sing N N 198 U C5 C6 doub N N 199 U C5 H5 sing N N 200 U C6 H6 sing N N 201 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KX9 'double helix' 5KX9 'a-form double helix' 5KX9 'hairpin loop' 5KX9 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 -0.034 0.201 0.797 1.864 -27.234 6.741 1 X_G1:C112_Y X 1 ? Y 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.633 -0.289 -0.025 -6.154 -17.344 6.276 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 -0.984 0.212 0.348 -2.148 -19.993 8.477 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1 1 A U 4 1_555 B A 53 1_555 -0.426 -0.038 0.110 -0.516 -17.166 4.505 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 1.289 -0.391 0.200 -1.955 -9.842 2.418 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 -0.114 -0.055 0.225 -0.502 -13.641 2.347 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.014 0.003 -0.092 7.697 -15.848 4.511 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 0.378 -0.129 0.117 2.186 -17.195 3.935 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.474 -4.162 0.637 -29.411 -46.116 -6.988 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -4.763 -1.754 0.008 28.013 -9.522 74.031 10 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.642 -0.017 0.452 7.122 -18.887 4.788 11 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 0.012 -0.009 -0.150 7.737 -21.981 4.739 12 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 -0.818 -0.256 0.135 -7.622 -17.861 1.838 13 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.606 -0.341 -0.021 -14.389 -16.309 -0.338 14 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.317 -2.378 -0.214 4.376 -1.424 -96.219 15 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 B G 14 1_555 -6.603 -4.263 0.932 -12.740 17.304 -5.002 16 X_A38:G70_Y X 38 ? Y 70 ? 11 10 1 B A 17 1_555 B U 13 1_555 -4.267 -2.015 0.907 -1.701 7.836 -92.217 17 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.148 0.061 0.244 13.373 -9.374 1.695 18 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 0.274 -0.121 0.020 6.827 -15.814 3.958 19 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 -0.141 -0.087 0.274 -10.135 -8.682 6.293 20 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.460 -0.063 -0.017 -6.824 -17.931 5.627 21 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 0.002 0.047 0.466 1.181 -1.823 15.588 22 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 -0.010 -0.129 -0.420 -4.368 -10.955 -3.910 23 Y_A81:U42_X Y 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.427 -0.016 0.202 1.280 -21.964 5.326 24 Y_C82:G41_X Y 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 0.577 -0.219 0.104 -3.923 -10.241 -2.001 25 Y_C83:G32_X Y 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 -0.073 -0.047 0.165 10.712 -12.995 2.436 26 Y_G84:C31_X Y 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.545 -0.239 0.354 6.593 -19.895 2.306 27 Y_G93:C30_X Y 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.457 -0.120 -0.177 10.068 -15.788 -4.969 28 Y_U94:A29_X Y 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 4.062 0.764 1.148 -14.786 -10.229 51.769 29 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 -0.528 -0.013 -0.017 3.117 -7.715 4.946 30 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.324 -0.069 -0.090 -5.852 -18.749 2.038 31 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.186 -0.034 -0.047 -20.187 -8.633 -3.785 32 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.313 -2.120 0.752 2.940 12.499 -91.705 33 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.974 -4.900 0.431 18.748 19.014 3.650 34 X_G19:A90_Y X 19 ? Y 90 ? 11 10 1 A A 49 1_555 B U 4 1_555 -0.244 0.080 0.081 12.136 -10.916 -1.842 35 X_A49:U60_Y X 49 ? Y 60 ? 20 1 1 A A 50 1_555 B U 3 1_555 0.673 -0.081 -0.234 4.675 -20.443 0.325 36 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 0.574 -0.224 0.220 -4.904 -17.277 -2.648 37 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 0.555 -0.041 0.402 -10.201 -18.185 4.966 38 X_C52:G57_Y X 52 ? Y 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 0.138 1.412 -0.451 10.738 -13.598 -12.603 39 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 0.012 0.024 -0.057 17.344 -24.411 4.156 40 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -0.062 -0.168 0.480 -5.028 -28.719 4.443 41 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.352 -0.106 0.427 -17.041 -20.345 -1.135 42 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.373 -2.456 0.021 9.799 3.503 -93.894 43 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 -0.171 -1.547 3.261 -1.869 7.700 32.341 -3.917 0.004 2.833 13.572 3.294 33.272 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.108 -0.973 3.081 -4.854 5.715 34.739 -2.366 -0.476 2.879 9.436 8.014 35.514 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 -0.416 -1.921 3.166 -0.075 5.838 33.912 -4.086 0.693 2.807 9.917 0.128 34.397 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.406 -1.623 3.277 0.588 4.137 35.341 -3.243 -0.581 3.079 6.784 -0.965 35.580 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -0.664 -2.332 3.052 -0.261 5.690 24.270 -6.859 1.472 2.456 13.300 0.610 24.920 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 0.205 -0.977 3.032 0.823 1.555 31.766 -2.045 -0.236 2.986 2.839 -1.501 31.814 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.436 -1.529 3.360 0.856 5.173 35.336 -3.239 -0.588 3.121 8.465 -1.401 35.711 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.825 -0.618 4.304 5.724 25.117 49.988 -2.467 3.428 3.352 27.712 -6.315 55.854 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 0.947 -4.133 -2.459 133.179 -89.453 36.212 -2.155 -0.571 2.159 -48.471 -72.165 161.410 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.857 -2.056 3.192 -1.283 0.757 30.913 -3.995 1.365 3.175 1.418 2.405 30.948 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.244 -1.428 3.457 -4.018 15.629 28.887 -5.059 -0.225 2.403 28.680 7.374 33.005 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.459 -1.875 3.429 3.709 7.605 37.517 -3.798 -0.235 3.036 11.643 -5.679 38.426 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.883 -1.314 2.842 5.939 4.386 84.472 -1.062 0.773 2.729 3.257 -4.410 84.733 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -0.956 -0.682 2.991 -6.237 1.351 0.270 -13.235 -24.270 0.916 18.539 85.592 6.388 14 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 3.240 -1.779 3.193 1.409 3.039 69.109 -1.675 -2.803 3.179 2.678 -1.242 69.180 15 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.404 -1.543 3.217 -0.846 7.209 38.922 -3.078 0.503 2.904 10.706 1.256 39.567 16 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.291 -1.524 3.251 -4.081 16.423 33.046 -4.384 -0.034 2.286 26.797 6.659 37.019 17 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.122 -1.263 3.215 5.381 6.944 33.398 -3.151 0.586 2.886 11.829 -9.168 34.502 18 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.545 -0.773 2.978 -2.617 -0.603 27.729 -1.475 -1.699 2.931 -1.255 5.445 27.856 19 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.424 -3.163 3.368 8.188 6.376 23.826 -8.604 2.951 2.198 14.589 -18.736 25.958 20 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.094 -1.602 3.037 -3.027 4.707 38.552 -2.910 -1.967 2.740 7.084 4.555 38.941 21 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -0.731 -1.357 3.499 0.965 2.768 33.976 -2.776 1.408 3.360 4.726 -1.648 34.099 22 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.232 0.137 2.975 -0.622 12.784 27.028 -2.183 -0.569 2.752 25.609 1.246 29.854 23 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.094 -1.938 3.158 -1.385 10.857 23.827 -6.724 -2.727 2.029 24.696 3.151 26.188 24 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -1.089 -1.409 3.048 -0.523 3.919 36.305 -2.742 1.673 2.900 6.266 0.836 36.513 25 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.777 -1.230 3.890 -5.716 -0.546 55.078 -1.286 -2.303 3.714 -0.589 6.162 55.353 26 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -6.195 0.106 2.713 5.058 1.946 34.062 -0.031 10.998 1.805 3.295 -8.567 34.478 27 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.863 -2.387 3.425 3.228 10.090 25.286 -7.362 -1.081 2.402 21.864 -6.996 27.382 28 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.358 -2.162 3.450 1.386 7.677 39.555 -4.000 0.676 2.983 11.211 -2.025 40.287 29 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.510 -1.890 2.925 -0.317 -0.852 72.856 -1.567 2.104 2.954 -0.718 0.267 72.861 30 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 2.004 -0.775 2.830 4.307 3.046 -0.313 -2.278 36.852 -1.019 -50.006 70.712 -5.285 31 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.406 -1.128 3.399 0.376 5.049 37.693 -2.384 0.671 3.223 7.772 -0.578 38.019 32 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.175 -1.719 3.349 -2.611 9.883 31.931 -4.532 -0.105 2.717 17.416 4.602 33.487 33 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.655 -1.612 3.267 3.751 4.059 32.708 -3.494 -0.530 3.103 7.144 -6.601 33.159 34 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.221 -1.180 2.956 -4.346 6.615 32.653 -2.960 -2.715 2.497 11.555 7.591 33.573 35 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.157 -1.619 3.567 -4.463 16.837 33.506 -4.666 -0.329 2.501 27.054 7.171 37.647 36 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.178 -1.611 3.248 3.221 10.606 37.115 -3.640 0.635 2.681 16.223 -4.928 38.679 37 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.231 -1.072 2.791 6.015 -1.147 80.656 -0.802 1.080 2.722 -0.885 -4.641 80.849 38 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' 6YG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5C45 _pdbx_initial_refinement_model.details ? #