HEADER ISOMERASE 20-JUL-16 5KXL TITLE HEN EGG WHITE LYSOZYME AT 100K, DATA SET 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: LYZ; SOURCE 6 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9031 KEYWDS CONFORMATIONAL VARIATION, RADIATION DAMAGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RUSSI,A.GONZALEZ,L.R.KENNER,D.A.KEEDY,J.S.FRASER,H.VAN DEN BEDEM REVDAT 6 16-OCT-24 5KXL 1 REMARK REVDAT 5 04-OCT-23 5KXL 1 LINK REVDAT 4 27-NOV-19 5KXL 1 REMARK REVDAT 3 27-SEP-17 5KXL 1 REMARK REVDAT 2 11-JAN-17 5KXL 1 JRNL REVDAT 1 07-SEP-16 5KXL 0 JRNL AUTH S.RUSSI,A.GONZALEZ,L.R.KENNER,D.A.KEEDY,J.S.FRASER, JRNL AUTH 2 H.VAN DEN BEDEM JRNL TITL CONFORMATIONAL VARIATION OF PROTEINS AT ROOM TEMPERATURE IS JRNL TITL 2 NOT DOMINATED BY RADIATION DAMAGE. JRNL REF J SYNCHROTRON RADIAT V. 24 73 2017 JRNL REFN ESSN 1600-5775 JRNL PMID 28009548 JRNL DOI 10.1107/S1600577516017343 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6761 - 2.8162 1.00 2839 147 0.1714 0.1599 REMARK 3 2 2.8162 - 2.2354 1.00 2706 129 0.1730 0.1823 REMARK 3 3 2.2354 - 1.9528 1.00 2632 154 0.1537 0.1751 REMARK 3 4 1.9528 - 1.7743 1.00 2670 122 0.1521 0.1675 REMARK 3 5 1.7743 - 1.6471 1.00 2604 152 0.1433 0.1535 REMARK 3 6 1.6471 - 1.5500 1.00 2611 145 0.1275 0.1393 REMARK 3 7 1.5500 - 1.4724 1.00 2605 144 0.1224 0.1560 REMARK 3 8 1.4724 - 1.4083 1.00 2576 148 0.1212 0.1794 REMARK 3 9 1.4083 - 1.3541 1.00 2633 129 0.1197 0.1576 REMARK 3 10 1.3541 - 1.3073 1.00 2600 127 0.1181 0.1489 REMARK 3 11 1.3073 - 1.2665 1.00 2590 127 0.1132 0.1528 REMARK 3 12 1.2665 - 1.2303 1.00 2586 130 0.1147 0.1681 REMARK 3 13 1.2303 - 1.1979 0.99 2543 144 0.1172 0.1574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2160 REMARK 3 ANGLE : 1.442 3001 REMARK 3 CHIRALITY : 0.105 311 REMARK 3 PLANARITY : 0.007 410 REMARK 3 DIHEDRAL : 12.469 836 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.21549 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.198 REMARK 200 RESOLUTION RANGE LOW (A) : 33.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02500 REMARK 200 FOR THE DATA SET : 38.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.11800 REMARK 200 R SYM FOR SHELL (I) : 0.11800 REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2BLX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY MIXING EQUAL REMARK 280 VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM REMARK 280 ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.60650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.65600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.65600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.90975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.65600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.65600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.30325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.65600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.65600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.90975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.65600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.65600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.30325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.60650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 367 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 94 CB CYS A 94 SG -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS A 94 CA - CB - SG ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 -3.62 -141.15 REMARK 500 ALA A 122 -25.86 -36.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE1 13.5 REMARK 620 3 GLU A 35 OE1 8.1 8.9 REMARK 620 4 HOH A 302 O 72.8 72.1 77.4 REMARK 620 5 HOH A 327 O 74.9 87.8 82.3 74.9 REMARK 620 6 HOH A 360 O 101.9 98.3 95.3 160.9 122.1 REMARK 620 7 HOH A 410 O 90.6 78.8 87.6 57.8 132.7 104.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 SER A 60 O 11.8 REMARK 620 3 SER A 60 O 7.6 4.5 REMARK 620 4 CYS A 64 O 93.1 88.1 88.9 REMARK 620 5 SER A 72 OG 82.4 90.0 88.1 165.0 REMARK 620 6 SER A 72 OG 84.8 91.7 90.1 169.4 4.6 REMARK 620 7 ARG A 73 O 102.2 91.5 95.9 89.7 105.1 100.8 REMARK 620 8 ARG A 73 O 102.6 91.9 96.3 89.9 105.0 100.6 0.4 REMARK 620 9 HOH A 351 O 163.9 172.4 170.8 99.5 82.8 80.9 87.9 87.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXK RELATED DB: PDB REMARK 900 RELATED ID: 5KXM RELATED DB: PDB REMARK 900 RELATED ID: 5KXN RELATED DB: PDB REMARK 900 RELATED ID: 5KXO RELATED DB: PDB REMARK 900 RELATED ID: 5KXP RELATED DB: PDB REMARK 900 RELATED ID: 5KXR RELATED DB: PDB REMARK 900 RELATED ID: 5KXS RELATED DB: PDB REMARK 900 RELATED ID: 5KXT RELATED DB: PDB REMARK 900 RELATED ID: 5KXW RELATED DB: PDB REMARK 900 RELATED ID: 5KXX RELATED DB: PDB REMARK 900 RELATED ID: 5KXY RELATED DB: PDB REMARK 900 RELATED ID: 5KY1 RELATED DB: PDB REMARK 900 RELATED ID: 5KXZ RELATED DB: PDB DBREF 5KXL A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET NA A 204 1 HET NA A 205 1 HET ACT A 206 7 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 CL 3(CL 1-) FORMUL 5 NA 2(NA 1+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *148(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.10 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.06 SSBOND 4 CYS A 76 CYS A 94 1555 1555 1.99 LINK OE1AGLU A 35 NA NA A 205 1555 1555 2.57 LINK OE1BGLU A 35 NA NA A 205 1555 1555 2.49 LINK OE1CGLU A 35 NA NA A 205 1555 1555 2.50 LINK O ASER A 60 NA NA A 204 1555 1555 2.37 LINK O BSER A 60 NA NA A 204 1555 1555 2.34 LINK O CSER A 60 NA NA A 204 1555 1555 2.30 LINK O CYS A 64 NA NA A 204 1555 1555 2.41 LINK OG ASER A 72 NA NA A 204 1555 1555 2.55 LINK OG BSER A 72 NA NA A 204 1555 1555 2.49 LINK O AARG A 73 NA NA A 204 1555 1555 2.45 LINK O BARG A 73 NA NA A 204 1555 1555 2.43 LINK NA NA A 204 O HOH A 351 1555 1555 2.38 LINK NA NA A 204 O HOH A 354 1555 1555 2.44 LINK NA NA A 205 O HOH A 302 1555 1555 2.95 LINK NA NA A 205 O HOH A 327 1555 1555 2.56 LINK NA NA A 205 O HOH A 360 1555 1555 2.40 LINK NA NA A 205 O HOH A 410 1555 1555 2.35 SITE 1 AC1 5 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 2 AC1 5 SER A 72 SITE 1 AC2 2 TYR A 23 ASN A 113 SITE 1 AC3 4 SER A 24 GLY A 26 GLN A 121 ILE A 124 SITE 1 AC4 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC4 6 HOH A 351 HOH A 354 SITE 1 AC5 6 GLU A 35 ASP A 52 HOH A 302 HOH A 327 SITE 2 AC5 6 HOH A 360 HOH A 410 SITE 1 AC6 7 ILE A 58 ASN A 59 TRP A 63 ILE A 98 SITE 2 AC6 7 ALA A 107 TRP A 108 HOH A 347 CRYST1 77.312 77.312 37.213 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026872 0.00000