HEADER TRANSFERASE 20-JUL-16 5KY2 TITLE MOUSE POFUT1 IN COMPLEX WITH O-GLUCOSYLATED MOUSE FACTOR VII EGF1 AND TITLE 2 GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR VII; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR; COMPND 11 EC: 3.4.21.21; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: F7, CF7; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 6 29-JUL-20 5KY2 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 5KY2 1 REMARK REVDAT 4 20-SEP-17 5KY2 1 REMARK REVDAT 3 28-JUN-17 5KY2 1 JRNL REVDAT 2 31-MAY-17 5KY2 1 JRNL REVDAT 1 17-MAY-17 5KY2 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 62405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9593 - 4.1194 1.00 3071 146 0.1605 0.1615 REMARK 3 2 4.1194 - 3.2699 1.00 2889 172 0.1341 0.1575 REMARK 3 3 3.2699 - 2.8567 1.00 2895 162 0.1448 0.1728 REMARK 3 4 2.8567 - 2.5955 1.00 2861 156 0.1444 0.1516 REMARK 3 5 2.5955 - 2.4095 1.00 2851 168 0.1352 0.1845 REMARK 3 6 2.4095 - 2.2674 1.00 2823 162 0.1339 0.1474 REMARK 3 7 2.2674 - 2.1539 1.00 2856 144 0.1401 0.1634 REMARK 3 8 2.1539 - 2.0601 1.00 2833 135 0.1334 0.1534 REMARK 3 9 2.0601 - 1.9808 1.00 2836 142 0.1389 0.1717 REMARK 3 10 1.9808 - 1.9124 1.00 2857 137 0.1432 0.1755 REMARK 3 11 1.9124 - 1.8526 1.00 2794 152 0.1455 0.1782 REMARK 3 12 1.8526 - 1.7997 1.00 2834 144 0.1520 0.1812 REMARK 3 13 1.7997 - 1.7523 1.00 2833 139 0.1594 0.1758 REMARK 3 14 1.7523 - 1.7096 1.00 2808 154 0.1715 0.2183 REMARK 3 15 1.7096 - 1.6707 1.00 2776 162 0.1821 0.2367 REMARK 3 16 1.6707 - 1.6351 0.99 2791 135 0.1946 0.2257 REMARK 3 17 1.6351 - 1.6024 0.98 2758 159 0.2082 0.2443 REMARK 3 18 1.6024 - 1.5722 0.95 2652 131 0.2147 0.2225 REMARK 3 19 1.5722 - 1.5441 0.91 2572 130 0.2419 0.2761 REMARK 3 20 1.5441 - 1.5179 0.84 2337 125 0.2728 0.2853 REMARK 3 21 1.5179 - 1.4934 0.72 2013 108 0.3207 0.3193 REMARK 3 22 1.4934 - 1.4705 0.47 1330 72 0.3709 0.3083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3488 REMARK 3 ANGLE : 1.283 4765 REMARK 3 CHIRALITY : 0.070 504 REMARK 3 PLANARITY : 0.007 618 REMARK 3 DIHEDRAL : 15.346 1299 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0372 39.1392 24.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1078 REMARK 3 T33: 0.1143 T12: -0.0037 REMARK 3 T13: -0.0042 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.9470 L22: 1.6909 REMARK 3 L33: 1.4514 L12: 0.0780 REMARK 3 L13: 0.1670 L23: 0.9688 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0745 S13: 0.0588 REMARK 3 S21: 0.0215 S22: -0.1277 S23: 0.1940 REMARK 3 S31: 0.0125 S32: -0.1549 S33: 0.1267 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6009 58.5037 16.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.3804 T22: 0.2373 REMARK 3 T33: 0.3618 T12: 0.0109 REMARK 3 T13: -0.1190 T23: 0.0782 REMARK 3 L TENSOR REMARK 3 L11: 6.4452 L22: 2.9517 REMARK 3 L33: 2.0536 L12: -0.7148 REMARK 3 L13: -1.2511 L23: 0.7682 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.8338 S13: 1.0998 REMARK 3 S21: -0.5294 S22: -0.0355 S23: 0.2643 REMARK 3 S31: -0.8410 S32: -0.2886 S33: -0.0140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5917 38.6895 17.2066 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1326 REMARK 3 T33: 0.1172 T12: -0.0112 REMARK 3 T13: -0.0131 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.6498 L22: 2.0215 REMARK 3 L33: 1.0628 L12: 0.0117 REMARK 3 L13: 0.0362 L23: 1.0545 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: 0.0404 S13: 0.0652 REMARK 3 S21: -0.1081 S22: -0.0171 S23: 0.0550 REMARK 3 S31: -0.1542 S32: -0.0011 S33: 0.0584 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1562 20.6180 3.9687 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1880 REMARK 3 T33: 0.1051 T12: -0.0138 REMARK 3 T13: 0.0127 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 3.1262 L22: 1.9584 REMARK 3 L33: 2.9594 L12: -0.7138 REMARK 3 L13: -0.1907 L23: 1.2239 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.4826 S13: -0.0329 REMARK 3 S21: -0.2312 S22: -0.0394 S23: -0.0501 REMARK 3 S31: -0.1482 S32: 0.1474 S33: 0.0643 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0780 50.5207 7.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.6050 T22: 0.3336 REMARK 3 T33: 0.5961 T12: -0.1758 REMARK 3 T13: 0.0373 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 4.1855 L22: 1.6362 REMARK 3 L33: 4.9687 L12: -0.9914 REMARK 3 L13: -0.0263 L23: -1.1795 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.0926 S13: 1.3538 REMARK 3 S21: -0.5548 S22: -0.0569 S23: -1.0886 REMARK 3 S31: -1.6900 S32: 1.2398 S33: 0.0562 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1554 44.3748 6.7728 REMARK 3 T TENSOR REMARK 3 T11: 0.3345 T22: 0.1976 REMARK 3 T33: 0.2636 T12: 0.0502 REMARK 3 T13: -0.0659 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.0501 L22: 3.3700 REMARK 3 L33: 6.9447 L12: 0.6007 REMARK 3 L13: -0.9138 L23: 0.3939 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.2970 S13: 0.4729 REMARK 3 S21: -0.5345 S22: -0.2160 S23: 0.1240 REMARK 3 S31: -0.6621 S32: -0.1435 S33: 0.2606 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8149 44.7533 0.4166 REMARK 3 T TENSOR REMARK 3 T11: 0.6022 T22: 0.3863 REMARK 3 T33: 0.3573 T12: -0.0278 REMARK 3 T13: 0.1373 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 3.0634 L22: 7.4917 REMARK 3 L33: 4.1156 L12: -0.4164 REMARK 3 L13: 3.4811 L23: -1.5332 REMARK 3 S TENSOR REMARK 3 S11: -0.1742 S12: 1.2476 S13: 0.5269 REMARK 3 S21: -1.4320 S22: 0.0428 S23: -0.9926 REMARK 3 S31: -0.5940 S32: 0.7442 S33: 0.0595 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2245 42.1538 -0.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.6740 T22: 0.2789 REMARK 3 T33: 0.3312 T12: 0.1094 REMARK 3 T13: -0.2216 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.8536 L22: 4.2409 REMARK 3 L33: 5.9891 L12: -1.4650 REMARK 3 L13: -0.6699 L23: -3.3434 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: 0.5263 S13: 0.4768 REMARK 3 S21: -1.0952 S22: -0.0311 S23: 0.7507 REMARK 3 S31: -0.3437 S32: -0.2237 S33: 0.1541 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.98250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.67850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.67850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.98250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 166 O HOH A 502 1.50 REMARK 500 O HOH A 595 O HOH A 807 2.04 REMARK 500 OE1 GLU A 318 O HOH A 501 2.05 REMARK 500 NZ LYS A 166 O HOH A 502 2.14 REMARK 500 NH1 ARG A 211 O HOH A 503 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 138 57.90 -112.12 REMARK 500 MET A 267 -123.58 47.54 REMARK 500 SER A 317 -106.69 -160.73 REMARK 500 LYS A 329 -119.73 55.21 REMARK 500 MET A 383 76.97 -159.63 REMARK 500 SER B 108 -159.37 -129.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 846 DISTANCE = 6.60 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KHX RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KX0 RELATED DB: PDB REMARK 900 RELATED ID: 5KX3 RELATED DB: PDB REMARK 900 RELATED ID: 5KX4 RELATED DB: PDB REMARK 900 RELATED ID: 5KX7 RELATED DB: PDB REMARK 900 RELATED ID: 5KX8 RELATED DB: PDB REMARK 900 RELATED ID: 5KX9 RELATED DB: PDB DBREF 5KY2 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY2 B 87 126 UNP P70375 FA7_MOUSE 87 126 SEQADV 5KY2 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY2 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY2 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP GLY ASP GLN CYS ALA SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY THR CYS GLN ASP HIS LEU LYS SER TYR VAL CYS PHE SEQRES 3 B 40 CYS LEU LEU ASP PHE GLU GLY ARG ASN CYS GLU LYS SER SEQRES 4 B 40 LYS HET NAG A 401 28 HET NAG A 402 28 HET GDP A 403 38 HET GOL A 404 14 HET GOL A 405 14 HET GOL A 406 14 HET BGC B1001 22 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 BGC C6 H12 O6 FORMUL 10 HOH *374(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 ARG A 138 1 6 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 259 1 13 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 ASP B 89 ASN B 94 5 6 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N GLY A 357 SHEET 1 AA5 2 THR B 101 HIS B 105 0 SHEET 2 AA5 2 SER B 108 PHE B 112 -1 O SER B 108 N HIS B 105 SHEET 1 AA6 2 PHE B 117 GLU B 118 0 SHEET 2 AA6 2 LYS B 124 SER B 125 -1 O LYS B 124 N GLU B 118 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.01 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.04 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.04 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.04 SSBOND 5 CYS B 91 CYS B 102 1555 1555 2.03 SSBOND 6 CYS B 96 CYS B 111 1555 1555 2.04 SSBOND 7 CYS B 113 CYS B 122 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.44 LINK OG SER B 93 C1 BGC B1001 1555 1555 1.43 CISPEP 1 PRO A 83 PRO A 84 0 5.23 CISPEP 2 ASN A 151 PRO A 152 0 10.46 CISPEP 3 PHE A 204 PRO A 205 0 -2.25 CISPEP 4 ARG A 237 PRO A 238 0 -3.88 CISPEP 5 GLY B 88 ASP B 89 0 13.18 CRYST1 51.965 67.138 109.357 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019244 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009144 0.00000