HEADER TRANSFERASE 21-JUL-16 5KY4 TITLE MOUSE POFUT1 IN COMPLEX WITH MOUSE NOTCH1 EGF26 AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NOTCH 1,MOTCH A,MT14,P300; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: NOTCH1, MOTCH; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 29-JUL-20 5KY4 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-JUN-17 5KY4 1 JRNL REVDAT 2 31-MAY-17 5KY4 1 JRNL REVDAT 1 17-MAY-17 5KY4 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 62128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0467 - 4.1233 0.99 3057 143 0.1539 0.1519 REMARK 3 2 4.1233 - 3.2730 1.00 2894 172 0.1379 0.1523 REMARK 3 3 3.2730 - 2.8594 1.00 2872 155 0.1458 0.1538 REMARK 3 4 2.8594 - 2.5979 1.00 2856 162 0.1438 0.1394 REMARK 3 5 2.5979 - 2.4117 1.00 2824 167 0.1359 0.1787 REMARK 3 6 2.4117 - 2.2696 1.00 2816 164 0.1311 0.1404 REMARK 3 7 2.2696 - 2.1559 1.00 2856 137 0.1378 0.1514 REMARK 3 8 2.1559 - 2.0621 1.00 2844 139 0.1378 0.1474 REMARK 3 9 2.0621 - 1.9827 1.00 2827 146 0.1418 0.1635 REMARK 3 10 1.9827 - 1.9142 1.00 2842 127 0.1455 0.1650 REMARK 3 11 1.9142 - 1.8544 1.00 2782 159 0.1539 0.1743 REMARK 3 12 1.8544 - 1.8014 1.00 2826 143 0.1608 0.2314 REMARK 3 13 1.8014 - 1.7540 1.00 2828 142 0.1580 0.1916 REMARK 3 14 1.7540 - 1.7112 1.00 2815 156 0.1657 0.1747 REMARK 3 15 1.7112 - 1.6723 1.00 2777 158 0.1667 0.2232 REMARK 3 16 1.6723 - 1.6367 1.00 2811 138 0.1840 0.1841 REMARK 3 17 1.6367 - 1.6039 0.99 2806 146 0.2137 0.2334 REMARK 3 18 1.6039 - 1.5737 0.97 2719 148 0.2236 0.2915 REMARK 3 19 1.5737 - 1.5456 0.93 2594 135 0.2500 0.2434 REMARK 3 20 1.5456 - 1.5194 0.83 2316 119 0.2826 0.2909 REMARK 3 21 1.5194 - 1.4948 0.67 1867 104 0.3101 0.2904 REMARK 3 22 1.4948 - 1.4718 0.42 1173 66 0.3333 0.3230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3329 REMARK 3 ANGLE : 1.014 4555 REMARK 3 CHIRALITY : 0.073 483 REMARK 3 PLANARITY : 0.007 589 REMARK 3 DIHEDRAL : 19.710 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7904 43.5144 26.1458 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1317 REMARK 3 T33: 0.1651 T12: -0.0088 REMARK 3 T13: -0.0050 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.6476 L22: 2.3133 REMARK 3 L33: 6.4081 L12: 0.5784 REMARK 3 L13: 2.1391 L23: 3.6690 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.1443 S13: 0.1536 REMARK 3 S21: 0.0691 S22: -0.2278 S23: 0.1756 REMARK 3 S31: 0.0245 S32: -0.2964 S33: 0.2195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6901 39.9138 23.6682 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.1327 REMARK 3 T33: 0.1608 T12: 0.0103 REMARK 3 T13: -0.0141 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.8980 L22: 1.3852 REMARK 3 L33: 1.4526 L12: 0.3754 REMARK 3 L13: 0.4763 L23: 0.8202 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.1055 S13: 0.1733 REMARK 3 S21: -0.0042 S22: -0.1796 S23: 0.2391 REMARK 3 S31: -0.0762 S32: -0.2163 S33: 0.1281 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0925 52.6306 18.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.2020 REMARK 3 T33: 0.2799 T12: 0.0085 REMARK 3 T13: -0.0900 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.3355 L22: 1.7657 REMARK 3 L33: 0.8303 L12: 0.7199 REMARK 3 L13: 1.0839 L23: 1.0405 REMARK 3 S TENSOR REMARK 3 S11: -0.2290 S12: 0.1992 S13: 0.6754 REMARK 3 S21: -0.3428 S22: -0.0942 S23: 0.3054 REMARK 3 S31: -0.4714 S32: -0.0214 S33: 0.2166 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0929 33.1449 20.9885 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1112 REMARK 3 T33: 0.1158 T12: -0.0053 REMARK 3 T13: -0.0125 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4957 L22: 2.2909 REMARK 3 L33: 1.5913 L12: -0.1382 REMARK 3 L13: 0.0763 L23: 1.2706 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.0584 S13: 0.0612 REMARK 3 S21: 0.0616 S22: -0.0064 S23: 0.0209 REMARK 3 S31: -0.0099 S32: -0.0158 S33: 0.0276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0391 20.2392 3.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.1134 REMARK 3 T33: 0.0882 T12: -0.0048 REMARK 3 T13: 0.0037 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.8347 L22: 1.8929 REMARK 3 L33: 3.2616 L12: -0.4328 REMARK 3 L13: -0.2583 L23: 1.3933 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.3634 S13: -0.0723 REMARK 3 S21: -0.1302 S22: -0.0762 S23: 0.0001 REMARK 3 S31: -0.0999 S32: -0.0021 S33: 0.0601 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 969 THROUGH 990 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1696 45.3368 3.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.6718 T22: 0.3798 REMARK 3 T33: 0.4719 T12: -0.1519 REMARK 3 T13: -0.0315 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.8418 L22: 6.2601 REMARK 3 L33: 3.7159 L12: -0.4861 REMARK 3 L13: 0.6379 L23: -2.5545 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: 0.3106 S13: 0.8122 REMARK 3 S21: -0.6603 S22: -0.2714 S23: -0.6962 REMARK 3 S31: -1.5605 S32: 0.8585 S33: 0.2568 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 991 THROUGH 1004 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2968 41.5360 0.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.6415 T22: 0.3491 REMARK 3 T33: 0.3934 T12: 0.1435 REMARK 3 T13: -0.1810 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 6.1617 L22: 3.4486 REMARK 3 L33: 4.7905 L12: -1.3688 REMARK 3 L13: 1.4716 L23: -1.9028 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.6114 S13: 0.5714 REMARK 3 S21: -0.9787 S22: -0.0290 S23: 0.7967 REMARK 3 S31: -0.8379 S32: -0.4354 S33: 0.0181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.45500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.18600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.45500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.18600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ASN B 965 REMARK 465 THR B 966 REMARK 465 PRO B 967 REMARK 465 ASP B 968 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 31 N CA CB REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 THR A 261 OG1 CG2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 SER A 278 OG REMARK 470 THR A 279 OG1 CG2 REMARK 470 THR A 281 OG1 CG2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 GLU B 971 CG CD OE1 OE2 REMARK 470 ILE B 984 CG1 CG2 CD1 REMARK 470 ASN B 985 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 336 O HOH A 501 1.30 REMARK 500 O HOH A 511 O HOH A 681 1.79 REMARK 500 O HOH A 661 O HOH A 805 1.98 REMARK 500 O HOH A 798 O HOH A 845 2.00 REMARK 500 OG SER A 336 O HOH A 501 2.07 REMARK 500 O HOH A 681 O HOH A 782 2.10 REMARK 500 O HOH A 510 O HOH A 825 2.12 REMARK 500 O HOH A 781 O HOH A 782 2.14 REMARK 500 O HOH A 618 O HOH A 872 2.17 REMARK 500 O HOH A 520 O HOH A 557 2.18 REMARK 500 O HOH A 567 O HOH A 811 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 794 O HOH A 834 4555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 152 C - N - CD ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 267 -125.16 46.72 REMARK 500 SER A 317 -106.19 -156.29 REMARK 500 ASP A 330 -1.18 82.04 REMARK 500 ASN B 985 17.13 -140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 893 DISTANCE = 5.88 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXH RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY4 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY4 B 965 1004 UNP Q01705 NOTC1_MOUSE 925 964 SEQADV 5KY4 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY4 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY4 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASN THR PRO ASP CYS THR GLU SER SER CYS PHE ASN GLY SEQRES 2 B 40 GLY THR CYS VAL ASP GLY ILE ASN SER PHE THR CYS LEU SEQRES 3 B 40 CYS PRO PRO GLY PHE THR GLY SER TYR CYS GLN TYR ASP SEQRES 4 B 40 VAL HET NAG A 401 14 HET NAG A 402 13 HET GDP A 403 28 HET PGO A 404 5 HET PGO A 405 5 HET PGO A 406 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PGO S-1,2-PROPANEDIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 PGO 3(C3 H8 O2) FORMUL 9 HOH *406(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 ARG A 138 1 6 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 259 1 13 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 979 ASP B 982 0 SHEET 2 AA5 2 PHE B 987 LEU B 990 -1 O THR B 988 N VAL B 981 SHEET 1 AA6 2 PHE B 995 THR B 996 0 SHEET 2 AA6 2 TYR B1002 ASP B1003 -1 O TYR B1002 N THR B 996 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.03 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.04 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.05 SSBOND 5 CYS B 969 CYS B 980 1555 1555 2.02 SSBOND 6 CYS B 974 CYS B 989 1555 1555 2.05 SSBOND 7 CYS B 991 CYS B 1000 1555 1555 2.05 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.44 CISPEP 1 PRO A 83 PRO A 84 0 4.98 CISPEP 2 ASN A 151 PRO A 152 0 6.23 CISPEP 3 PHE A 204 PRO A 205 0 -4.58 CISPEP 4 ARG A 237 PRO A 238 0 -2.58 CRYST1 51.920 66.372 110.910 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009016 0.00000