HEADER TRANSFERASE 21-JUL-16 5KY5 TITLE MOUSE POFUT1 IN COMPLEX WITH EGF(+) AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EGF(+); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 GENE: F7, CF7; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 5 09-OCT-24 5KY5 1 HETSYN REVDAT 4 29-JUL-20 5KY5 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-JUN-17 5KY5 1 JRNL REVDAT 2 31-MAY-17 5KY5 1 JRNL REVDAT 1 17-MAY-17 5KY5 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2341 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1793 - 4.2648 1.00 2823 133 0.1480 0.1638 REMARK 3 2 4.2648 - 3.3854 1.00 2671 162 0.1400 0.1476 REMARK 3 3 3.3854 - 2.9575 1.00 2656 136 0.1581 0.1622 REMARK 3 4 2.9575 - 2.6871 1.00 2614 153 0.1585 0.1644 REMARK 3 5 2.6871 - 2.4946 1.00 2598 144 0.1452 0.1650 REMARK 3 6 2.4946 - 2.3475 1.00 2624 155 0.1441 0.1687 REMARK 3 7 2.3475 - 2.2299 1.00 2579 149 0.1484 0.1602 REMARK 3 8 2.2299 - 2.1329 1.00 2632 117 0.1478 0.1575 REMARK 3 9 2.1329 - 2.0507 1.00 2585 137 0.1532 0.1722 REMARK 3 10 2.0507 - 1.9800 1.00 2604 120 0.1558 0.1773 REMARK 3 11 1.9800 - 1.9181 1.00 2591 124 0.1537 0.1896 REMARK 3 12 1.9181 - 1.8632 1.00 2582 148 0.1586 0.1876 REMARK 3 13 1.8632 - 1.8142 1.00 2575 134 0.1628 0.2144 REMARK 3 14 1.8142 - 1.7699 1.00 2601 122 0.1758 0.1519 REMARK 3 15 1.7699 - 1.7297 1.00 2558 154 0.1740 0.2194 REMARK 3 16 1.7297 - 1.6929 1.00 2586 133 0.1790 0.2080 REMARK 3 17 1.6929 - 1.6590 1.00 2582 143 0.1825 0.1958 REMARK 3 18 1.6590 - 1.6277 1.00 2561 124 0.1989 0.2445 REMARK 3 19 1.6277 - 1.5986 1.00 2570 141 0.2004 0.2539 REMARK 3 20 1.5986 - 1.5715 1.00 2559 125 0.2115 0.2340 REMARK 3 21 1.5715 - 1.5462 1.00 2601 137 0.2260 0.2341 REMARK 3 22 1.5462 - 1.5224 1.00 2563 131 0.2413 0.2560 REMARK 3 23 1.5224 - 1.5000 1.00 2562 145 0.2749 0.3105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3303 REMARK 3 ANGLE : 1.118 4511 REMARK 3 CHIRALITY : 0.056 479 REMARK 3 PLANARITY : 0.007 581 REMARK 3 DIHEDRAL : 15.202 1974 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4452 37.9321 24.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1186 REMARK 3 T33: 0.1384 T12: -0.0032 REMARK 3 T13: -0.0013 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.0257 L22: 1.9234 REMARK 3 L33: 1.9121 L12: 0.0768 REMARK 3 L13: 0.2025 L23: 0.8494 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.0502 S13: 0.0504 REMARK 3 S21: 0.0962 S22: -0.1876 S23: 0.2278 REMARK 3 S31: 0.0831 S32: -0.2751 S33: 0.1868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5391 53.2555 19.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.2066 REMARK 3 T33: 0.2392 T12: 0.0237 REMARK 3 T13: -0.0980 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 5.4285 L22: 2.6854 REMARK 3 L33: 1.5730 L12: 0.6627 REMARK 3 L13: 0.6762 L23: 1.0263 REMARK 3 S TENSOR REMARK 3 S11: -0.2142 S12: 0.4798 S13: 0.6297 REMARK 3 S21: -0.3327 S22: -0.0590 S23: 0.2679 REMARK 3 S31: -0.5512 S32: -0.1078 S33: 0.2518 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5102 30.5755 10.1977 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1757 REMARK 3 T33: 0.1403 T12: -0.0137 REMARK 3 T13: -0.0165 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.8877 L22: 2.5984 REMARK 3 L33: 1.9698 L12: -0.4639 REMARK 3 L13: -0.0172 L23: 2.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.2440 S13: 0.0790 REMARK 3 S21: -0.2228 S22: -0.0232 S23: -0.0813 REMARK 3 S31: -0.2685 S32: 0.0698 S33: 0.0186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0870 15.7073 5.9554 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.1609 REMARK 3 T33: 0.1421 T12: -0.0164 REMARK 3 T13: 0.0130 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.5679 L22: 2.3788 REMARK 3 L33: 3.3273 L12: -0.2497 REMARK 3 L13: -0.3019 L23: 1.2142 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.4371 S13: -0.3254 REMARK 3 S21: 0.0224 S22: -0.0726 S23: 0.1522 REMARK 3 S31: 0.2684 S32: -0.0952 S33: 0.1225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4558 46.1415 4.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.5134 T22: 0.2576 REMARK 3 T33: 0.3320 T12: -0.0456 REMARK 3 T13: 0.0364 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 9.1597 L22: 4.8367 REMARK 3 L33: 7.5053 L12: -0.5929 REMARK 3 L13: -2.4137 L23: -0.7075 REMARK 3 S TENSOR REMARK 3 S11: 0.3627 S12: 0.2054 S13: 1.3215 REMARK 3 S21: -0.7307 S22: -0.2975 S23: -0.3290 REMARK 3 S31: -1.2651 S32: 0.5270 S33: -0.0742 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1205 40.9264 0.3463 REMARK 3 T TENSOR REMARK 3 T11: 0.4436 T22: 0.4140 REMARK 3 T33: 0.3240 T12: 0.0930 REMARK 3 T13: -0.1668 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 7.3202 L22: 2.0049 REMARK 3 L33: 6.8946 L12: -0.6355 REMARK 3 L13: 0.3512 L23: -2.4703 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.7326 S13: 0.4253 REMARK 3 S21: -0.9449 S22: 0.1980 S23: 0.9672 REMARK 3 S31: -0.6058 S32: -0.6802 S33: 0.1085 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.04000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.04000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 336 O HOH A 502 1.28 REMARK 500 OE1 GLU A 222 O HOH A 501 1.94 REMARK 500 OG SER A 336 O HOH A 502 1.97 REMARK 500 O HOH A 734 O HOH A 836 2.04 REMARK 500 O HOH A 648 O HOH A 847 2.06 REMARK 500 OG SER A 176 O HOH A 503 2.07 REMARK 500 O HOH A 793 O HOH A 830 2.07 REMARK 500 O HOH A 526 O HOH A 829 2.09 REMARK 500 N ASP B 1 O HOH B 101 2.12 REMARK 500 O ILE A 313 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H ALA A 280 O HOH A 504 4555 1.52 REMARK 500 O HOH A 564 O HOH A 675 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 48 -158.69 -101.21 REMARK 500 LYS A 143 -6.29 -143.38 REMARK 500 MET A 267 -127.18 46.77 REMARK 500 SER A 317 -105.44 -157.46 REMARK 500 ASP A 330 2.92 81.21 REMARK 500 MET A 383 88.45 -151.63 REMARK 500 SER B 22 -144.27 -163.60 REMARK 500 ASP B 39 -174.84 -67.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 924 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 926 DISTANCE = 6.06 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXH RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY5 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY5 B 1 40 PDB 5KY5 5KY5 1 40 SEQADV 5KY5 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY5 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY5 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP ILE ASP GLU CYS ALA SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY THR CYS VAL ASN THR VAL GLY SER TYR THR CYS LEU SEQRES 3 B 40 CYS PRO PRO GLY PHE THR GLY PRO ASN CYS GLU ASP ASP SEQRES 4 B 40 ILE HET NAG A 401 28 HET NAG A 402 28 HET GDP A 403 38 HET GOL A 404 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *448(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 SER A 139 1 7 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 259 1 13 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 ASP B 3 ASN B 8 5 6 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 15 ASN B 18 0 SHEET 2 AA5 2 TYR B 23 LEU B 26 -1 O THR B 24 N VAL B 17 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.04 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.05 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.05 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.05 SSBOND 5 CYS B 5 CYS B 16 1555 1555 2.04 SSBOND 6 CYS B 10 CYS B 25 1555 1555 2.03 SSBOND 7 CYS B 27 CYS B 36 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.43 CISPEP 1 PRO A 83 PRO A 84 0 5.70 CISPEP 2 ASN A 151 PRO A 152 0 15.06 CISPEP 3 PHE A 204 PRO A 205 0 -2.78 CISPEP 4 ARG A 237 PRO A 238 0 -1.97 CRYST1 52.080 67.030 111.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009001 0.00000