HEADER TRANSFERASE 21-JUL-16 5KY7 TITLE MOUSE POFUT1 IN COMPLEX WITH O-GLUCOSYLATED EGF(+) AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EGF(+); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 29-JUL-20 5KY7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-JUN-17 5KY7 1 JRNL REVDAT 2 31-MAY-17 5KY7 1 JRNL REVDAT 1 17-MAY-17 5KY7 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 49184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8207 - 4.1924 0.97 2791 132 0.1834 0.2066 REMARK 3 2 4.1924 - 3.3279 0.99 2664 162 0.1659 0.1802 REMARK 3 3 3.3279 - 2.9073 0.99 2653 140 0.1781 0.1844 REMARK 3 4 2.9073 - 2.6415 0.99 2631 150 0.1911 0.2214 REMARK 3 5 2.6415 - 2.4522 0.98 2606 148 0.1858 0.1996 REMARK 3 6 2.4522 - 2.3076 0.99 2624 153 0.2002 0.2225 REMARK 3 7 2.3076 - 2.1920 0.99 2604 141 0.1978 0.2534 REMARK 3 8 2.1920 - 2.0966 0.98 2596 118 0.2019 0.2056 REMARK 3 9 2.0966 - 2.0159 0.98 2569 137 0.2086 0.2195 REMARK 3 10 2.0159 - 1.9463 0.98 2595 122 0.2138 0.2356 REMARK 3 11 1.9463 - 1.8855 0.98 2578 121 0.2284 0.2503 REMARK 3 12 1.8855 - 1.8316 0.98 2546 148 0.2339 0.2642 REMARK 3 13 1.8316 - 1.7834 0.98 2570 126 0.2311 0.2708 REMARK 3 14 1.7834 - 1.7399 0.97 2541 128 0.2421 0.2308 REMARK 3 15 1.7399 - 1.7003 0.97 2558 145 0.2510 0.3019 REMARK 3 16 1.7003 - 1.6641 0.97 2518 136 0.2541 0.3019 REMARK 3 17 1.6641 - 1.6308 0.97 2527 131 0.2642 0.2986 REMARK 3 18 1.6308 - 1.6000 0.97 2546 129 0.2886 0.3141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3162 REMARK 3 ANGLE : 1.128 4326 REMARK 3 CHIRALITY : 0.061 469 REMARK 3 PLANARITY : 0.006 554 REMARK 3 DIHEDRAL : 14.920 1856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8145 40.6771 23.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.3275 REMARK 3 T33: 0.3972 T12: 0.0878 REMARK 3 T13: -0.2260 T23: -0.2110 REMARK 3 L TENSOR REMARK 3 L11: 0.1212 L22: 0.4600 REMARK 3 L33: 0.4328 L12: -0.0244 REMARK 3 L13: 0.1056 L23: 0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.3296 S12: -0.2737 S13: 0.6265 REMARK 3 S21: -0.1462 S22: -0.2810 S23: 0.1196 REMARK 3 S31: -0.3265 S32: -0.5290 S33: -0.1982 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4006 48.6838 22.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.4657 T22: 0.3643 REMARK 3 T33: 0.5970 T12: 0.1553 REMARK 3 T13: -0.3867 T23: -0.3891 REMARK 3 L TENSOR REMARK 3 L11: 1.2520 L22: 0.7669 REMARK 3 L33: 0.8999 L12: 0.8348 REMARK 3 L13: 0.4419 L23: 0.6878 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: -0.1947 S13: 0.3672 REMARK 3 S21: -0.0712 S22: -0.0375 S23: 0.1725 REMARK 3 S31: -0.3774 S32: -0.1027 S33: 0.3175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4657 53.6018 21.3789 REMARK 3 T TENSOR REMARK 3 T11: 0.6599 T22: 0.2728 REMARK 3 T33: 0.7586 T12: -0.1175 REMARK 3 T13: -0.3597 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.8941 L22: 1.6939 REMARK 3 L33: 1.5814 L12: 1.0950 REMARK 3 L13: -0.1645 L23: 0.5389 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: 0.0302 S13: -0.3879 REMARK 3 S21: -0.0517 S22: 0.0094 S23: -0.4499 REMARK 3 S31: -0.0028 S32: 0.0579 S33: -0.0729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1853 23.4128 8.1164 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1710 REMARK 3 T33: 0.1269 T12: -0.0101 REMARK 3 T13: -0.0157 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.3422 L22: 1.4725 REMARK 3 L33: 2.1459 L12: -0.1431 REMARK 3 L13: 0.5088 L23: 1.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.2218 S13: 0.0809 REMARK 3 S21: -0.0801 S22: -0.0940 S23: -0.0641 REMARK 3 S31: -0.0328 S32: 0.0798 S33: 0.0656 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9464 44.6051 6.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.4988 T22: 0.2575 REMARK 3 T33: 0.5293 T12: -0.0166 REMARK 3 T13: -0.2411 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 3.7339 L22: 5.7169 REMARK 3 L33: 3.0654 L12: -2.2100 REMARK 3 L13: 1.2800 L23: 2.6447 REMARK 3 S TENSOR REMARK 3 S11: -0.2564 S12: 0.1699 S13: 0.9998 REMARK 3 S21: -0.4303 S22: 0.0217 S23: -0.5020 REMARK 3 S31: -0.6139 S32: 0.2785 S33: 0.2570 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4483 42.0261 0.8719 REMARK 3 T TENSOR REMARK 3 T11: 0.5686 T22: 0.3395 REMARK 3 T33: 0.5492 T12: 0.0383 REMARK 3 T13: -0.2901 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.5031 L22: 1.7114 REMARK 3 L33: 5.1469 L12: -0.3856 REMARK 3 L13: -0.7942 L23: -0.5276 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.5881 S13: 0.5391 REMARK 3 S21: -0.4674 S22: -0.2788 S23: 0.4421 REMARK 3 S31: -0.6114 S32: -0.2323 S33: 0.1901 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 SER A 139 REMARK 465 PRO A 140 REMARK 465 ASP A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 ASP B 1 REMARK 465 ILE B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 VAL B 20 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 532 O HOH A 693 1.97 REMARK 500 OG SER B 7 O5 BGC B 1001 2.08 REMARK 500 O HOH A 792 O HOH A 796 2.09 REMARK 500 O HOH A 608 O HOH A 750 2.09 REMARK 500 O HOH A 726 O HOH A 744 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 121 OD2 ASP A 291 2565 1.60 REMARK 500 O HOH A 713 O HOH A 744 3645 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 48 -159.82 -99.83 REMARK 500 MET A 267 -126.37 48.65 REMARK 500 SER A 317 -104.79 -156.29 REMARK 500 ASP A 330 1.83 82.44 REMARK 500 MET A 383 89.02 -152.46 REMARK 500 SER B 22 -144.18 -163.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXH RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY7 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY7 B 1 40 PDB 5KY7 5KY7 1 40 SEQADV 5KY7 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY7 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY7 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP ILE ASP GLU CYS ALA SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY THR CYS VAL ASN THR VAL GLY SER TYR THR CYS LEU SEQRES 3 B 40 CYS PRO PRO GLY PHE THR GLY PRO ASN CYS GLU ASP ASP SEQRES 4 B 40 ILE HET NAG A 401 28 HET NAG A 402 28 HET GDP A 403 38 HET BGC B1001 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM BGC BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 BGC C6 H12 O6 FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 GLN A 137 1 5 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 259 1 13 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 LEU A 327 LYS A 329 5 3 HELIX 19 AC1 VAL A 341 GLN A 351 1 11 HELIX 20 AC2 SER A 361 HIS A 374 1 14 HELIX 21 AC3 ASP B 3 ASN B 8 5 6 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N LEU A 70 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 15 ASN B 18 0 SHEET 2 AA5 2 TYR B 23 LEU B 26 -1 O THR B 24 N VAL B 17 SHEET 1 AA6 2 PHE B 31 THR B 32 0 SHEET 2 AA6 2 ASP B 38 ASP B 39 -1 O ASP B 38 N THR B 32 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.03 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.05 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.03 SSBOND 5 CYS B 5 CYS B 16 1555 1555 2.03 SSBOND 6 CYS B 10 CYS B 25 1555 1555 2.03 SSBOND 7 CYS B 27 CYS B 36 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.44 LINK OG SER B 7 C1 BGC B1001 1555 1555 1.44 CISPEP 1 PRO A 83 PRO A 84 0 4.48 CISPEP 2 ASN A 151 PRO A 152 0 11.97 CISPEP 3 PHE A 204 PRO A 205 0 -1.41 CISPEP 4 ARG A 237 PRO A 238 0 -2.08 CRYST1 51.890 66.440 108.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009228 0.00000