HEADER TRANSFERASE 21-JUL-16 5KYM TITLE CRYSTAL STRUCTURE OF THE 1-ACYL-SN-GLYCEROPHOSPHATE (LPA) TITLE 2 ACYLTRANSFERASE, PLSC, FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.51; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TMARI_1701; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS INTEGRAL MEMBRANE, MEMBRANE HELICES, HX4D ACYLTRANSFERASE, ALPHA-BETA KEYWDS 2 STRUCTURE, 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.ROBERTSON,J.YAO,S.GAJEWSKI,G.KUMAR,E.W.MARTIN,C.O.ROCK,S.W.WHITE REVDAT 4 06-MAR-24 5KYM 1 REMARK REVDAT 3 16-AUG-17 5KYM 1 JRNL REVDAT 2 02-AUG-17 5KYM 1 JRNL REVDAT 1 26-JUL-17 5KYM 0 JRNL AUTH R.M.ROBERTSON,J.YAO,S.GAJEWSKI,G.KUMAR,E.W.MARTIN,C.O.ROCK, JRNL AUTH 2 S.W.WHITE JRNL TITL A TWO-HELIX MOTIF POSITIONS THE LYSOPHOSPHATIDIC ACID JRNL TITL 2 ACYLTRANSFERASE ACTIVE SITE FOR CATALYSIS WITHIN THE JRNL TITL 3 MEMBRANE BILAYER. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 666 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28714993 JRNL DOI 10.1038/NSMB.3436 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 278 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.699 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.339 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.064 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4226 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4293 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5652 ; 2.009 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9907 ; 1.064 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.712 ;21.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 711 ;16.868 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;23.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4306 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 3.977 ; 5.908 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1886 ; 3.964 ; 5.905 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2350 ; 6.301 ; 8.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2351 ; 6.301 ; 8.848 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 4.801 ; 6.825 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2340 ; 4.800 ; 6.826 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3303 ; 7.963 ;10.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4611 ; 9.762 ;69.809 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4612 ; 9.761 ;69.815 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 244 B 1 244 14236 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 247 REMARK 3 RESIDUE RANGE : B 1 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5207 72.7275 40.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.1514 T22: 0.1640 REMARK 3 T33: 0.1206 T12: -0.1034 REMARK 3 T13: -0.1065 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.3181 L22: 0.9169 REMARK 3 L33: 0.4811 L12: 0.3114 REMARK 3 L13: -0.0045 L23: 0.5310 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: 0.1714 S13: 0.1618 REMARK 3 S21: -0.1328 S22: 0.2461 S23: 0.1120 REMARK 3 S31: 0.0367 S32: 0.0601 S33: -0.0513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.18790 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% (W/V) POLYETHYLENE GLYCOL 3350 REMARK 280 (PEG3350), 0.1 M HEPES, AND 0.2 M MGCL 2, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 86.91800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 86.91800 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 86.91800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 86.91800 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 86.91800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 86.91800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 ASN A 130 REMARK 465 PRO A 131 REMARK 465 ARG A 132 REMARK 465 LYS B 105 REMARK 465 GLU B 106 REMARK 465 PHE B 125 REMARK 465 LEU B 126 REMARK 465 ASP B 127 REMARK 465 ARG B 128 REMARK 465 LYS B 129 REMARK 465 ASN B 130 REMARK 465 PRO B 131 REMARK 465 ARG B 132 REMARK 465 ARG B 133 REMARK 465 ALA B 134 REMARK 465 TRP B 245 REMARK 465 SER B 246 REMARK 465 LYS B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 LYS B 228 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 85 16.41 -148.83 REMARK 500 VAL A 97 -52.58 -137.46 REMARK 500 THR A 99 73.11 -101.64 REMARK 500 ALA A 137 -61.89 -25.69 REMARK 500 PHE A 154 79.95 -113.80 REMARK 500 GLN B 85 18.00 -149.30 REMARK 500 VAL B 97 -56.78 -136.82 REMARK 500 THR B 158 158.38 179.92 REMARK 500 LYS B 242 79.30 -41.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 4 ARG B 5 146.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HGX A 301 REMARK 610 HGX A 302 REMARK 610 HGX A 303 REMARK 610 HGX B 301 REMARK 610 HGX B 302 REMARK 610 HGX B 303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HGX B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 B 305 DBREF 5KYM A 1 247 UNP R4NS39 R4NS39_THEMA 1 247 DBREF 5KYM B 1 247 UNP R4NS39 R4NS39_THEMA 1 247 SEQRES 1 A 247 MET ARG LYS ILE ARG ASN LEU LEU LEU THR LEU TYR PHE SEQRES 2 A 247 TYR PHE ILE ALA THR VAL TYR ILE VAL PHE TYR GLY GLY SEQRES 3 A 247 PHE VAL LEU PHE ARG SER PHE LEU MET ARG ASP ARG GLU SEQRES 4 A 247 LYS ALA ARG LYS TYR VAL LEU LYS GLU ILE GLU LYS PHE SEQRES 5 A 247 GLY LYS ARG ALA PHE THR TRP LEU PHE SER ASP VAL VAL SEQRES 6 A 247 VAL GLU GLY SER GLU ASN ILE PRO LYS ASP ARG ASN PHE SEQRES 7 A 247 ILE VAL VAL ALA ASN HIS GLN SER LEU MET ASP ILE PRO SEQRES 8 A 247 LEU ILE LEU GLY PHE VAL ALA THR GLY ALA PHE ILE ALA SEQRES 9 A 247 LYS GLU GLU LEU ARG LYS ILE PRO GLY VAL ASN TRP TYR SEQRES 10 A 247 ILE ARG TYR LEU ASN GLY VAL PHE LEU ASP ARG LYS ASN SEQRES 11 A 247 PRO ARG ARG ALA VAL ARG ALA LEU ARG GLU ALA ILE GLU SEQRES 12 A 247 LYS LEU LYS ASN GLY VAL THR PHE ILE VAL PHE PRO GLU SEQRES 13 A 247 GLY THR ARG SER PRO ASP GLY LYS VAL LEU SER PHE LYS SEQRES 14 A 247 LYS ASP SER LEU MET ILE ALA VAL LYS THR GLY VAL PRO SEQRES 15 A 247 VAL LEU PRO VAL SER ILE TRP GLY THR TYR HIS LEU ILE SEQRES 16 A 247 PRO LYS GLY ARG TRP THR PHE THR PRO GLY LYS VAL PHE SEQRES 17 A 247 LEU LYS ILE HIS GLU PRO VAL ASP PRO LYS GLY PHE SER SEQRES 18 A 247 SER GLU GLU GLU LEU ARG LYS TYR VAL GLU GLU VAL VAL SEQRES 19 A 247 LYS ARG GLY VAL GLU GLU LEU LYS ALA ARG TRP SER LYS SEQRES 1 B 247 MET ARG LYS ILE ARG ASN LEU LEU LEU THR LEU TYR PHE SEQRES 2 B 247 TYR PHE ILE ALA THR VAL TYR ILE VAL PHE TYR GLY GLY SEQRES 3 B 247 PHE VAL LEU PHE ARG SER PHE LEU MET ARG ASP ARG GLU SEQRES 4 B 247 LYS ALA ARG LYS TYR VAL LEU LYS GLU ILE GLU LYS PHE SEQRES 5 B 247 GLY LYS ARG ALA PHE THR TRP LEU PHE SER ASP VAL VAL SEQRES 6 B 247 VAL GLU GLY SER GLU ASN ILE PRO LYS ASP ARG ASN PHE SEQRES 7 B 247 ILE VAL VAL ALA ASN HIS GLN SER LEU MET ASP ILE PRO SEQRES 8 B 247 LEU ILE LEU GLY PHE VAL ALA THR GLY ALA PHE ILE ALA SEQRES 9 B 247 LYS GLU GLU LEU ARG LYS ILE PRO GLY VAL ASN TRP TYR SEQRES 10 B 247 ILE ARG TYR LEU ASN GLY VAL PHE LEU ASP ARG LYS ASN SEQRES 11 B 247 PRO ARG ARG ALA VAL ARG ALA LEU ARG GLU ALA ILE GLU SEQRES 12 B 247 LYS LEU LYS ASN GLY VAL THR PHE ILE VAL PHE PRO GLU SEQRES 13 B 247 GLY THR ARG SER PRO ASP GLY LYS VAL LEU SER PHE LYS SEQRES 14 B 247 LYS ASP SER LEU MET ILE ALA VAL LYS THR GLY VAL PRO SEQRES 15 B 247 VAL LEU PRO VAL SER ILE TRP GLY THR TYR HIS LEU ILE SEQRES 16 B 247 PRO LYS GLY ARG TRP THR PHE THR PRO GLY LYS VAL PHE SEQRES 17 B 247 LEU LYS ILE HIS GLU PRO VAL ASP PRO LYS GLY PHE SER SEQRES 18 B 247 SER GLU GLU GLU LEU ARG LYS TYR VAL GLU GLU VAL VAL SEQRES 19 B 247 LYS ARG GLY VAL GLU GLU LEU LYS ALA ARG TRP SER LYS HET HGX A 301 32 HET HGX A 302 32 HET HGX A 303 32 HET DD9 A 304 9 HET HGX B 301 44 HET HGX B 302 43 HET HGX B 303 42 HET LMT B 304 35 HET DD9 B 305 9 HETNAM HGX 1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYL HETNAM 2 HGX CHOLINE HETNAM DD9 NONANE HETNAM LMT DODECYL-BETA-D-MALTOSIDE FORMUL 3 HGX 6(C38 H77 N O8 P 1+) FORMUL 6 DD9 2(C9 H20) FORMUL 10 LMT C24 H46 O11 FORMUL 12 HOH *(H2 O) HELIX 1 AA1 MET A 1 MET A 35 1 35 HELIX 2 AA2 ASP A 37 LEU A 60 1 24 HELIX 3 AA3 GLY A 68 ILE A 72 5 5 HELIX 4 AA4 MET A 88 VAL A 97 1 10 HELIX 5 AA5 LYS A 105 ILE A 111 5 7 HELIX 6 AA6 GLY A 113 LEU A 121 1 9 HELIX 7 AA7 ARG A 136 GLY A 148 1 13 HELIX 8 AA8 LEU A 173 LYS A 178 1 6 HELIX 9 AA9 GLY A 190 ILE A 195 1 6 HELIX 10 AB1 ASP A 216 PHE A 220 5 5 HELIX 11 AB2 SER A 222 ARG A 244 1 23 HELIX 12 AB3 MET B 1 LYS B 3 5 3 HELIX 13 AB4 ILE B 4 MET B 35 1 32 HELIX 14 AB5 ASP B 37 LEU B 60 1 24 HELIX 15 AB6 GLY B 68 ILE B 72 5 5 HELIX 16 AB7 MET B 88 VAL B 97 1 10 HELIX 17 AB8 GLY B 113 LEU B 121 1 9 HELIX 18 AB9 ARG B 136 GLY B 148 1 13 HELIX 19 AC1 LEU B 173 LYS B 178 1 6 HELIX 20 AC2 GLY B 190 ILE B 195 1 6 HELIX 21 AC3 ASP B 216 PHE B 220 5 5 HELIX 22 AC4 SER B 222 LYS B 242 1 21 SHEET 1 AA1 5 VAL A 64 GLU A 67 0 SHEET 2 AA1 5 VAL A 207 ILE A 211 1 O ILE A 211 N GLU A 67 SHEET 3 AA1 5 VAL A 183 TRP A 189 -1 N SER A 187 O LYS A 210 SHEET 4 AA1 5 ILE A 79 ALA A 82 1 N VAL A 81 O VAL A 186 SHEET 5 AA1 5 PHE A 151 VAL A 153 1 O PHE A 151 N VAL A 80 SHEET 1 AA2 2 ILE A 103 ALA A 104 0 SHEET 2 AA2 2 VAL A 124 PHE A 125 1 O VAL A 124 N ALA A 104 SHEET 1 AA3 5 VAL B 64 GLU B 67 0 SHEET 2 AA3 5 VAL B 207 ILE B 211 1 O ILE B 211 N GLU B 67 SHEET 3 AA3 5 VAL B 183 TRP B 189 -1 N TRP B 189 O PHE B 208 SHEET 4 AA3 5 ILE B 79 ALA B 82 1 N VAL B 81 O VAL B 186 SHEET 5 AA3 5 PHE B 151 VAL B 153 1 O PHE B 151 N VAL B 80 SITE 1 AC1 4 PHE A 27 ARG A 31 HGX A 302 HGX A 303 SITE 1 AC2 4 ARG A 55 TRP A 59 HGX A 301 HGX A 303 SITE 1 AC3 4 VAL A 19 ARG A 55 HGX A 301 HGX A 302 SITE 1 AC4 3 TYR A 24 PHE A 52 TYR A 117 SITE 1 AC5 9 PHE B 23 GLY B 26 PHE B 27 ARG B 31 SITE 2 AC5 9 TYR B 44 GLU B 48 LYS B 51 HGX B 302 SITE 3 AC5 9 HGX B 303 SITE 1 AC6 4 ARG B 55 TRP B 59 HGX B 301 HGX B 303 SITE 1 AC7 6 PHE B 23 TYR B 24 LYS B 51 ARG B 55 SITE 2 AC7 6 HGX B 301 HGX B 302 SITE 1 AC8 5 LYS A 3 GLY A 198 TRP A 200 GLY B 198 SITE 2 AC8 5 TRP B 200 SITE 1 AC9 4 TYR B 20 PHE B 52 ILE B 90 TYR B 117 CRYST1 173.836 173.836 173.836 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005753 0.00000