HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-JUL-16 5L04 TITLE STRUCTURE OF INTERFERON LAMBDA 1 RECEPTOR WITH HUMAN KINASE JAK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE JAK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-577; COMPND 5 SYNONYM: JANUS KINASE 1,JAK-1; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERFERON LAMBDA RECEPTOR 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 260-307; COMPND 12 SYNONYM: IFN-LAMBDA-R1,CYTOKINE RECEPTOR CLASS-II MEMBER 12,CYTOKINE COMPND 13 RECEPTOR FAMILY 2 MEMBER 12,CRF2-12,INTERLEUKIN-28 RECEPTOR SUBUNIT COMPND 14 ALPHA,IL-28RA,LIKELY INTERLEUKIN OR CYTOKINE RECEPTOR 2,LICR2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JAK1, JAK1A, JAK1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-32A(+); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IFNLR1, IL28RA, LICR2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA 2 (DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-32A(+) KEYWDS COMPLEX OF JAK1 AND INTERFERON LAMBDA 1, JAK KINASE, INTRACELLULAR KEYWDS 2 DOMAIN OF IFNLR1, FERM DOMAIN, SH2-LIKE DOMAIN, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER,D.ZHANG REVDAT 3 06-MAR-24 5L04 1 REMARK REVDAT 2 12-APR-17 5L04 1 JRNL REVDAT 1 12-OCT-16 5L04 0 JRNL AUTH D.ZHANG,A.WLODAWER,J.LUBKOWSKI JRNL TITL CRYSTAL STRUCTURE OF A COMPLEX OF THE INTRACELLULAR DOMAIN JRNL TITL 2 OF INTERFERON LAMBDA RECEPTOR 1 (IFNLR1) AND THE FERM/SH2 JRNL TITL 3 DOMAINS OF HUMAN JAK1. JRNL REF J. MOL. BIOL. V. 428 4651 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27725180 JRNL DOI 10.1016/J.JMB.2016.10.005 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.5 REMARK 3 NUMBER OF REFLECTIONS : 30056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.457 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5L04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40748 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLANKS (0.2 MM X 0.1 MM X 0.02 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML OF PROTEIN IN 50 MM HEPES REMARK 280 BUFFER (PH 7.5) WITH 150 MM NACL, MIXESD WITH 1:1 RATIO WITH 18% REMARK 280 (W/V) PEG 3350, 0.2 M AMONIUM FORMATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.85000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.85000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 GLU A 33 REMARK 465 PRO A 34 REMARK 465 LYS A 132 REMARK 465 LYS A 133 REMARK 465 GLN A 134 REMARK 465 LYS A 135 REMARK 465 ASN A 136 REMARK 465 GLY A 137 REMARK 465 TYR A 138 REMARK 465 GLU A 139 REMARK 465 LYS A 140 REMARK 465 LYS A 141 REMARK 465 LYS A 142 REMARK 465 ILE A 143 REMARK 465 PRO A 144 REMARK 465 ASP A 145 REMARK 465 LEU A 211 REMARK 465 PRO A 212 REMARK 465 LYS A 213 REMARK 465 ASP A 214 REMARK 465 ILE A 215 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 MET A 299 REMARK 465 ASN A 300 REMARK 465 TRP A 301 REMARK 465 PHE A 302 REMARK 465 HIS A 303 REMARK 465 SER A 304 REMARK 465 ASN A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 ASN A 330 REMARK 465 VAL A 331 REMARK 465 VAL A 332 REMARK 465 SER A 333 REMARK 465 VAL A 334 REMARK 465 GLU A 335 REMARK 465 LYS A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 ASN A 339 REMARK 465 LYS A 340 REMARK 465 LEU A 341 REMARK 465 LYS A 342 REMARK 465 ARG A 343 REMARK 465 LYS A 344 REMARK 465 LYS A 345 REMARK 465 LEU A 346 REMARK 465 GLU A 347 REMARK 465 ASN A 348 REMARK 465 LYS A 349 REMARK 465 HIS A 350 REMARK 465 LYS A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 GLU A 354 REMARK 465 GLU A 355 REMARK 465 LYS A 356 REMARK 465 ASN A 357 REMARK 465 LYS A 358 REMARK 465 ILE A 359 REMARK 465 ARG A 360 REMARK 465 GLU A 361 REMARK 465 SER A 485 REMARK 465 GLU A 486 REMARK 465 GLN A 487 REMARK 465 VAL A 488 REMARK 465 GLN A 489 REMARK 465 GLY A 490 REMARK 465 ALA A 491 REMARK 465 TRP A 564 REMARK 465 GLN A 565 REMARK 465 PRO A 566 REMARK 465 VAL A 567 REMARK 465 TYR A 568 REMARK 465 PRO A 569 REMARK 465 MET A 570 REMARK 465 SER A 571 REMARK 465 GLN A 572 REMARK 465 LEU A 573 REMARK 465 SER A 574 REMARK 465 PHE A 575 REMARK 465 ASP A 576 REMARK 465 ARG A 577 REMARK 465 SER A 578 REMARK 465 GLY A 579 REMARK 465 ARG B 260 REMARK 465 LEU B 298 REMARK 465 THR B 299 REMARK 465 ARG B 300 REMARK 465 GLY B 301 REMARK 465 VAL B 302 REMARK 465 ARG B 303 REMARK 465 PRO B 304 REMARK 465 THR B 305 REMARK 465 PRO B 306 REMARK 465 ARG B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 733 O HOH A 759 2.12 REMARK 500 O HOH A 625 O HOH A 734 2.14 REMARK 500 O HOH A 735 O HOH A 764 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 535 OD1 ASN A 535 2556 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 153 CB SER A 153 OG -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 414 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 124 128.30 -36.91 REMARK 500 LEU A 208 77.46 35.73 REMARK 500 ASN A 253 -70.48 -79.14 REMARK 500 LYS A 254 -71.04 -73.73 REMARK 500 SER A 260 71.79 43.95 REMARK 500 GLU A 379 -96.19 56.36 REMARK 500 ASP A 534 -129.67 52.31 REMARK 500 LYS A 541 -107.02 -107.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 5L04 A 31 577 UNP P23458 JAK1_HUMAN 31 577 DBREF 5L04 B 260 307 UNP Q8IU57 INLR1_HUMAN 260 307 SEQADV 5L04 GLY A 30 UNP P23458 EXPRESSION TAG SEQADV 5L04 SER A 578 UNP P23458 EXPRESSION TAG SEQADV 5L04 GLY A 579 UNP P23458 EXPRESSION TAG SEQRES 1 A 550 GLY ALA PRO GLU PRO GLY VAL GLU VAL ILE PHE TYR LEU SEQRES 2 A 550 SER ASP ARG GLU PRO LEU ARG LEU GLY SER GLY GLU TYR SEQRES 3 A 550 THR ALA GLU GLU LEU CYS ILE ARG ALA ALA GLN ALA CYS SEQRES 4 A 550 ARG ILE SER PRO LEU CYS HIS ASN LEU PHE ALA LEU TYR SEQRES 5 A 550 ASP GLU ASN THR LYS LEU TRP TYR ALA PRO ASN ARG THR SEQRES 6 A 550 ILE THR VAL ASP ASP LYS MET SER LEU ARG LEU HIS TYR SEQRES 7 A 550 ARG MET ARG PHE TYR PHE THR ASN TRP HIS GLY THR ASN SEQRES 8 A 550 ASP ASN GLU GLN SER VAL TRP ARG HIS SER PRO LYS LYS SEQRES 9 A 550 GLN LYS ASN GLY TYR GLU LYS LYS LYS ILE PRO ASP ALA SEQRES 10 A 550 THR PRO LEU LEU ASP ALA SER SER LEU GLU TYR LEU PHE SEQRES 11 A 550 ALA GLN GLY GLN TYR ASP LEU VAL LYS CYS LEU ALA PRO SEQRES 12 A 550 ILE ARG ASP PRO LYS THR GLU GLN ASP GLY HIS ASP ILE SEQRES 13 A 550 GLU ASN GLU CYS LEU GLY MET ALA VAL LEU ALA ILE SER SEQRES 14 A 550 HIS TYR ALA MET MET LYS LYS MET GLN LEU PRO GLU LEU SEQRES 15 A 550 PRO LYS ASP ILE SER TYR LYS ARG TYR ILE PRO GLU THR SEQRES 16 A 550 LEU ASN LYS SER ILE ARG GLN ARG ASN LEU LEU THR ARG SEQRES 17 A 550 MET ARG ILE ASN ASN VAL PHE LYS ASP PHE LEU LYS GLU SEQRES 18 A 550 PHE ASN ASN LYS THR ILE CYS ASP SER SER VAL SER THR SEQRES 19 A 550 HIS ASP LEU LYS VAL LYS TYR LEU ALA THR LEU GLU THR SEQRES 20 A 550 LEU THR LYS HIS TYR GLY ALA GLU ILE PHE GLU THR SER SEQRES 21 A 550 MET LEU LEU ILE SER SER GLU ASN GLU MET ASN TRP PHE SEQRES 22 A 550 HIS SER ASN ASP GLY GLY ASN VAL LEU TYR TYR GLU VAL SEQRES 23 A 550 MET VAL THR GLY ASN LEU GLY ILE GLN TRP ARG HIS LYS SEQRES 24 A 550 PRO ASN VAL VAL SER VAL GLU LYS GLU LYS ASN LYS LEU SEQRES 25 A 550 LYS ARG LYS LYS LEU GLU ASN LYS HIS LYS LYS ASP GLU SEQRES 26 A 550 GLU LYS ASN LYS ILE ARG GLU GLU TRP ASN ASN PHE SER SEQRES 27 A 550 TYR PHE PRO GLU ILE THR HIS ILE VAL ILE LYS GLU SER SEQRES 28 A 550 VAL VAL SER ILE ASN LYS GLN ASP ASN LYS LYS MET GLU SEQRES 29 A 550 LEU LYS LEU SER SER HIS GLU GLU ALA LEU SER PHE VAL SEQRES 30 A 550 SER LEU VAL ASP GLY TYR PHE ARG LEU THR ALA ASP ALA SEQRES 31 A 550 HIS HIS TYR LEU CYS THR ASP VAL ALA PRO PRO LEU ILE SEQRES 32 A 550 VAL HIS ASN ILE GLN ASN GLY CYS HIS GLY PRO ILE CYS SEQRES 33 A 550 THR GLU TYR ALA ILE ASN LYS LEU ARG GLN GLU GLY SER SEQRES 34 A 550 GLU GLU GLY MET TYR VAL LEU ARG TRP SER CYS THR ASP SEQRES 35 A 550 PHE ASP ASN ILE LEU MET THR VAL THR CYS PHE GLU LYS SEQRES 36 A 550 SER GLU GLN VAL GLN GLY ALA GLN LYS GLN PHE LYS ASN SEQRES 37 A 550 PHE GLN ILE GLU VAL GLN LYS GLY ARG TYR SER LEU HIS SEQRES 38 A 550 GLY SER ASP ARG SER PHE PRO SER LEU GLY ASP LEU MET SEQRES 39 A 550 SER HIS LEU LYS LYS GLN ILE LEU ARG THR ASP ASN ILE SEQRES 40 A 550 SER PHE MET LEU LYS ARG CYS CYS GLN PRO LYS PRO ARG SEQRES 41 A 550 GLU ILE SER ASN LEU LEU VAL ALA THR LYS LYS ALA GLN SEQRES 42 A 550 GLU TRP GLN PRO VAL TYR PRO MET SER GLN LEU SER PHE SEQRES 43 A 550 ASP ARG SER GLY SEQRES 1 B 48 ARG ALA LYS MET PRO ARG ALA LEU ASP PHE SER GLY HIS SEQRES 2 B 48 THR HIS PRO VAL ALA THR PHE GLN PRO SER ARG PRO GLU SEQRES 3 B 48 SER VAL ASN ASP LEU PHE LEU CYS PRO GLN LYS GLU LEU SEQRES 4 B 48 THR ARG GLY VAL ARG PRO THR PRO ARG FORMUL 3 HOH *185(H2 O) HELIX 1 AA1 ALA A 57 CYS A 68 1 12 HELIX 2 AA2 CYS A 74 ASN A 76 5 3 HELIX 3 AA3 ALA A 152 LYS A 168 1 17 HELIX 4 AA4 THR A 178 LYS A 205 1 28 HELIX 5 AA5 SER A 216 ILE A 221 5 6 HELIX 6 AA6 PRO A 222 GLN A 231 1 10 HELIX 7 AA7 ASN A 233 ASN A 253 1 21 HELIX 8 AA8 ASN A 253 SER A 260 1 8 HELIX 9 AA9 SER A 262 THR A 278 1 17 HELIX 10 AB1 TYR A 368 PRO A 370 5 3 HELIX 11 AB2 SER A 398 ALA A 417 1 20 HELIX 12 AB3 CYS A 424 ALA A 428 5 5 HELIX 13 AB4 PRO A 429 ASN A 438 1 10 HELIX 14 AB5 CYS A 445 GLY A 457 1 13 HELIX 15 AB6 SER A 518 LYS A 528 1 11 HELIX 16 AB7 THR A 558 GLU A 563 5 6 HELIX 17 AB8 PRO B 264 ASP B 268 5 5 SHEET 1 AA1 5 LEU A 48 LEU A 50 0 SHEET 2 AA1 5 VAL A 36 ILE A 39 -1 N VAL A 36 O LEU A 50 SHEET 3 AA1 5 LEU A 103 MET A 109 1 O LEU A 105 N ILE A 39 SHEET 4 AA1 5 PHE A 78 ASP A 82 -1 N TYR A 81 O HIS A 106 SHEET 5 AA1 5 LEU A 87 TRP A 88 -1 O LEU A 87 N ASP A 82 SHEET 1 AA2 2 GLY A 53 THR A 56 0 SHEET 2 AA2 2 THR A 94 VAL A 97 -1 O VAL A 97 N GLY A 53 SHEET 1 AA3 2 TRP A 127 ARG A 128 0 SHEET 2 AA3 2 VAL A 556 ALA A 557 -1 O ALA A 557 N TRP A 127 SHEET 1 AA4 2 LEU A 150 ASP A 151 0 SHEET 2 AA4 2 THR B 278 PHE B 279 1 O PHE B 279 N LEU A 150 SHEET 1 AA5 4 GLU A 284 THR A 288 0 SHEET 2 AA5 4 TYR A 313 THR A 318 -1 O VAL A 315 N PHE A 286 SHEET 3 AA5 4 GLY A 322 HIS A 327 -1 O GLN A 324 N MET A 316 SHEET 4 AA5 4 ASN A 364 SER A 367 -1 O ASN A 364 N TRP A 325 SHEET 1 AA6 4 LEU A 291 ILE A 293 0 SHEET 2 AA6 4 LYS A 391 LYS A 395 -1 O GLU A 393 N LEU A 292 SHEET 3 AA6 4 VAL A 381 LYS A 386 -1 N VAL A 382 O LEU A 394 SHEET 4 AA6 4 ILE A 372 LYS A 378 -1 N LYS A 378 O VAL A 381 SHEET 1 AA7 5 CYS A 440 HIS A 441 0 SHEET 2 AA7 5 TYR A 463 TRP A 467 1 O LEU A 465 N HIS A 441 SHEET 3 AA7 5 ASN A 474 PHE A 482 -1 O LEU A 476 N ARG A 466 SHEET 4 AA7 5 LYS A 493 GLN A 503 -1 O ILE A 500 N ILE A 475 SHEET 5 AA7 5 ARG A 506 LEU A 509 -1 O SER A 508 N GLU A 501 SHEET 1 AA8 3 ILE A 536 PHE A 538 0 SHEET 2 AA8 3 GLN A 529 THR A 533 -1 N LEU A 531 O PHE A 538 SHEET 3 AA8 3 PHE B 291 PRO B 294 -1 O PHE B 291 N ARG A 532 CRYST1 165.700 53.800 87.390 90.00 114.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006035 0.000000 0.002778 0.00000 SCALE2 0.000000 0.018587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012597 0.00000