HEADER LYASE 28-JUL-16 5L12 TITLE CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CLYCODIPHOSPHATE TITLE 2 SYNTHASE FROM BURKHOLDERIA PSEUDOMALLEI DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MECPS; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1106A); SOURCE 3 ORGANISM_TAXID: 357348; SOURCE 4 STRAIN: 1106A; SOURCE 5 GENE: ISPF, BURPS1106A_2400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEP PATHWAY, ISPF, SITE-DIRECTED MUTAGENESIS, DOULBLE MUTANT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BLAIN,G.RANEIRI,R.L.WALTER,T.J.HAGEN,J.R.HORN REVDAT 2 06-MAR-24 5L12 1 LINK REVDAT 1 01-NOV-17 5L12 0 JRNL AUTH J.M.BLAIN,G.RANEIRI,R.L.WALTER,T.J.HAGEN,J.R.HORN JRNL TITL ENZYME ENGINEERING FOR THE DEVELOPMENT OF A HIGH-THROUGHPUT JRNL TITL 2 TEMPERATURE SCREEN OF BURKHOLDERIA PSEUDOMALLEI ISPF JRNL TITL 3 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0700 - 4.1325 1.00 3553 147 0.1509 0.1925 REMARK 3 2 4.1325 - 3.2810 1.00 3485 145 0.1495 0.1859 REMARK 3 3 3.2810 - 2.8665 1.00 3463 143 0.1667 0.2040 REMARK 3 4 2.8665 - 2.6045 1.00 3439 143 0.1709 0.2144 REMARK 3 5 2.6045 - 2.4179 1.00 3475 144 0.1562 0.1727 REMARK 3 6 2.4179 - 2.2754 1.00 3460 144 0.1554 0.2087 REMARK 3 7 2.2754 - 2.1614 1.00 3442 142 0.1665 0.2151 REMARK 3 8 2.1614 - 2.0673 1.00 3453 144 0.1650 0.1884 REMARK 3 9 2.0673 - 1.9878 1.00 3450 143 0.1749 0.2144 REMARK 3 10 1.9878 - 1.9192 1.00 3470 143 0.1954 0.2474 REMARK 3 11 1.9192 - 1.8592 1.00 3430 143 0.2246 0.2903 REMARK 3 12 1.8592 - 1.8060 1.00 3443 143 0.2172 0.2481 REMARK 3 13 1.8060 - 1.7585 1.00 3425 142 0.2292 0.2576 REMARK 3 14 1.7585 - 1.7160 0.93 3230 134 0.2453 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3349 REMARK 3 ANGLE : 1.249 4536 REMARK 3 CHIRALITY : 0.055 538 REMARK 3 PLANARITY : 0.007 606 REMARK 3 DIHEDRAL : 11.046 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.9920 -39.7404 14.9989 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.4088 REMARK 3 T33: 0.1630 T12: 0.0040 REMARK 3 T13: -0.0023 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.5529 L22: 0.9628 REMARK 3 L33: 1.6229 L12: 0.0898 REMARK 3 L13: 0.5621 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.6268 S13: 0.0941 REMARK 3 S21: -0.0416 S22: 0.0282 S23: -0.1650 REMARK 3 S31: 0.0515 S32: 0.5175 S33: 0.0239 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2411 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 2411 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.716 REMARK 200 RESOLUTION RANGE LOW (A) : 34.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, NACL, PEG 4000, ZNCL2, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.42950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.42950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 323 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 66 REMARK 465 GLY B 35 REMARK 465 HIS B 36 REMARK 465 SER B 37 REMARK 465 ASP B 38 REMARK 465 SER C 64 REMARK 465 ASP C 65 REMARK 465 THR C 66 REMARK 465 ASP C 67 REMARK 465 PRO C 68 REMARK 465 ARG C 69 REMARK 465 PHE C 70 REMARK 465 LYS C 71 REMARK 465 GLY C 72 REMARK 465 ALA C 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 SER A 64 OG REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 VAL B 15 CG1 CG2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 28 CG CD REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 33 CG CD1 CD2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 SER B 64 OG REMARK 470 ASP B 65 CG OD1 OD2 REMARK 470 THR B 66 OG1 CG2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 PRO B 68 CG CD REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 MET C 1 CG SD CE REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 28 CG CD REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 HIS C 36 CG ND1 CD2 CE1 NE2 REMARK 470 SER C 37 OG REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 103 CG CD OE1 NE2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 ASP C 112 CG OD1 OD2 REMARK 470 LEU C 126 CG CD1 CD2 REMARK 470 LYS C 138 CG CD CE NZ REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 39 O HOH B 301 2.08 REMARK 500 O HOH B 381 O HOH B 390 2.10 REMARK 500 OE1 GLU B 146 O HOH B 302 2.16 REMARK 500 O ARG C 158 O HOH C 302 2.18 REMARK 500 O HOH A 435 O HOH B 370 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 10 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 149.21 -172.29 REMARK 500 SER A 37 -159.14 -84.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 464 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 465 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 466 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH C 417 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 418 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH C 419 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH C 420 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH C 421 DISTANCE = 8.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 HIS A 12 NE2 97.2 REMARK 620 3 HIS A 44 ND1 103.8 116.0 REMARK 620 4 HOH A 408 O 120.0 116.9 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 54.5 REMARK 620 3 HIS B 12 NE2 97.2 102.8 REMARK 620 4 HIS B 44 ND1 127.5 91.2 131.5 REMARK 620 5 HOH B 353 O 77.2 127.9 101.6 105.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 HIS C 12 NE2 96.3 REMARK 620 3 HIS C 44 ND1 104.0 121.1 REMARK 620 4 HOH C 383 O 119.2 109.3 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L03 RELATED DB: PDB DBREF 5L12 A 1 158 UNP A3NWD9 ISPF_BURP0 1 158 DBREF 5L12 B 1 158 UNP A3NWD9 ISPF_BURP0 1 158 DBREF 5L12 C 1 158 UNP A3NWD9 ISPF_BURP0 1 158 SEQADV 5L12 GLU A 7 UNP A3NWD9 GLN 7 ENGINEERED MUTATION SEQADV 5L12 GLU A 151 UNP A3NWD9 GLN 151 ENGINEERED MUTATION SEQADV 5L12 GLU B 7 UNP A3NWD9 GLN 7 ENGINEERED MUTATION SEQADV 5L12 GLU B 151 UNP A3NWD9 GLN 151 ENGINEERED MUTATION SEQADV 5L12 GLU C 7 UNP A3NWD9 GLN 7 ENGINEERED MUTATION SEQADV 5L12 GLU C 151 UNP A3NWD9 GLN 151 ENGINEERED MUTATION SEQRES 1 A 158 MET ASP PHE ARG ILE GLY GLU GLY TYR ASP VAL HIS GLN SEQRES 2 A 158 LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL THR SEQRES 3 A 158 ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP ALA SEQRES 4 A 158 ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE GLY SEQRES 5 A 158 ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER ASP SEQRES 6 A 158 THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA LEU SEQRES 7 A 158 LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY PHE SEQRES 8 A 158 ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN ALA SEQRES 9 A 158 PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA ASN SEQRES 10 A 158 ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL ASN SEQRES 11 A 158 VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU GLY SEQRES 12 A 158 ARG GLY GLU GLY ILE GLU ALA GLU ALA ALA ALA LEU VAL SEQRES 13 A 158 VAL ARG SEQRES 1 B 158 MET ASP PHE ARG ILE GLY GLU GLY TYR ASP VAL HIS GLN SEQRES 2 B 158 LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL THR SEQRES 3 B 158 ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP ALA SEQRES 4 B 158 ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE GLY SEQRES 5 B 158 ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER ASP SEQRES 6 B 158 THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA LEU SEQRES 7 B 158 LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY PHE SEQRES 8 B 158 ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN ALA SEQRES 9 B 158 PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA ASN SEQRES 10 B 158 ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL ASN SEQRES 11 B 158 VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU GLY SEQRES 12 B 158 ARG GLY GLU GLY ILE GLU ALA GLU ALA ALA ALA LEU VAL SEQRES 13 B 158 VAL ARG SEQRES 1 C 158 MET ASP PHE ARG ILE GLY GLU GLY TYR ASP VAL HIS GLN SEQRES 2 C 158 LEU VAL PRO GLY ARG PRO LEU ILE ILE GLY GLY VAL THR SEQRES 3 C 158 ILE PRO TYR GLU ARG GLY LEU LEU GLY HIS SER ASP ALA SEQRES 4 C 158 ASP VAL LEU LEU HIS ALA ILE THR ASP ALA LEU PHE GLY SEQRES 5 C 158 ALA ALA ALA LEU GLY ASP ILE GLY ARG HIS PHE SER ASP SEQRES 6 C 158 THR ASP PRO ARG PHE LYS GLY ALA ASP SER ARG ALA LEU SEQRES 7 C 158 LEU ARG GLU CYS ALA SER ARG VAL ALA GLN ALA GLY PHE SEQRES 8 C 158 ALA ILE ARG ASN VAL ASP SER THR ILE ILE ALA GLN ALA SEQRES 9 C 158 PRO LYS LEU ALA PRO HIS ILE ASP ALA MET ARG ALA ASN SEQRES 10 C 158 ILE ALA ALA ASP LEU ASP LEU PRO LEU ASP ARG VAL ASN SEQRES 11 C 158 VAL LYS ALA LYS THR ASN GLU LYS LEU GLY TYR LEU GLY SEQRES 12 C 158 ARG GLY GLU GLY ILE GLU ALA GLU ALA ALA ALA LEU VAL SEQRES 13 C 158 VAL ARG HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *390(H2 O) HELIX 1 AA1 ASP A 40 ALA A 54 1 15 HELIX 2 AA2 ASP A 58 PHE A 63 1 6 HELIX 3 AA3 ASP A 67 LYS A 71 5 5 HELIX 4 AA4 ASP A 74 ALA A 89 1 16 HELIX 5 AA5 LEU A 107 PRO A 109 5 3 HELIX 6 AA6 HIS A 110 ASP A 123 1 14 HELIX 7 AA7 PRO A 125 VAL A 129 5 5 HELIX 8 AA8 LEU A 139 ARG A 144 1 6 HELIX 9 AA9 ASP B 40 ALA B 54 1 15 HELIX 10 AB1 ASP B 58 PHE B 63 1 6 HELIX 11 AB2 ASP B 74 ALA B 89 1 16 HELIX 12 AB3 LEU B 107 PRO B 109 5 3 HELIX 13 AB4 HIS B 110 ASP B 123 1 14 HELIX 14 AB5 PRO B 125 VAL B 129 5 5 HELIX 15 AB6 LEU B 139 ARG B 144 1 6 HELIX 16 AB7 ASP C 40 ALA C 54 1 15 HELIX 17 AB8 ASP C 58 PHE C 63 1 6 HELIX 18 AB9 SER C 75 ALA C 89 1 15 HELIX 19 AC1 LEU C 107 PRO C 109 5 3 HELIX 20 AC2 HIS C 110 LEU C 122 1 13 HELIX 21 AC3 PRO C 125 VAL C 129 5 5 HELIX 22 AC4 LEU C 139 ARG C 144 1 6 SHEET 1 AA1 5 ARG A 31 LEU A 33 0 SHEET 2 AA1 5 PHE A 3 PRO A 16 -1 N VAL A 15 O GLY A 32 SHEET 3 AA1 5 GLY A 147 VAL A 157 -1 O VAL A 156 N ARG A 4 SHEET 4 AA1 5 ALA A 92 ILE A 101 -1 N ALA A 92 O VAL A 157 SHEET 5 AA1 5 LYS A 132 LYS A 134 1 O LYS A 134 N ILE A 100 SHEET 1 AA2 2 LEU A 20 ILE A 22 0 SHEET 2 AA2 2 VAL A 25 ILE A 27 -1 O ILE A 27 N LEU A 20 SHEET 1 AA3 5 ARG B 31 LEU B 33 0 SHEET 2 AA3 5 PHE B 3 PRO B 16 -1 N VAL B 15 O GLY B 32 SHEET 3 AA3 5 GLY B 147 VAL B 157 -1 O VAL B 156 N ARG B 4 SHEET 4 AA3 5 ALA B 92 ILE B 101 -1 N ARG B 94 O LEU B 155 SHEET 5 AA3 5 LYS B 132 LYS B 134 1 O LYS B 132 N ILE B 100 SHEET 1 AA4 2 LEU B 20 ILE B 22 0 SHEET 2 AA4 2 VAL B 25 ILE B 27 -1 O ILE B 27 N LEU B 20 SHEET 1 AA5 5 ARG C 31 LEU C 33 0 SHEET 2 AA5 5 PHE C 3 PRO C 16 -1 N VAL C 15 O GLY C 32 SHEET 3 AA5 5 GLY C 147 VAL C 157 -1 O ALA C 150 N ASP C 10 SHEET 4 AA5 5 ALA C 92 ILE C 101 -1 N ILE C 101 O GLU C 149 SHEET 5 AA5 5 LYS C 132 LYS C 134 1 O LYS C 132 N ILE C 100 SHEET 1 AA6 2 LEU C 20 ILE C 22 0 SHEET 2 AA6 2 VAL C 25 ILE C 27 -1 O ILE C 27 N LEU C 20 LINK OD2 ASP A 10 ZN ZN A 201 1555 1555 1.92 LINK NE2 HIS A 12 ZN ZN A 201 1555 1555 2.00 LINK ND1 HIS A 44 ZN ZN A 201 1555 1555 2.03 LINK ZN ZN A 201 O HOH A 408 1555 1555 1.97 LINK OD1 ASP B 10 ZN ZN B 201 1555 1555 2.54 LINK OD2 ASP B 10 ZN ZN B 201 1555 1555 1.88 LINK NE2 HIS B 12 ZN ZN B 201 1555 1555 2.03 LINK ND1 HIS B 44 ZN ZN B 201 1555 1555 2.05 LINK ZN ZN B 201 O HOH B 353 1555 1555 2.06 LINK OD2 ASP C 10 ZN ZN C 201 1555 1555 1.89 LINK NE2 HIS C 12 ZN ZN C 201 1555 1555 2.02 LINK ND1 HIS C 44 ZN ZN C 201 1555 1555 1.99 LINK ZN ZN C 201 O HOH C 383 1555 1555 2.11 CISPEP 1 ALA A 104 PRO A 105 0 -5.65 CISPEP 2 ALA B 104 PRO B 105 0 -5.22 CISPEP 3 ALA C 104 PRO C 105 0 -5.40 SITE 1 AC1 4 ASP A 10 HIS A 12 HIS A 44 HOH A 408 SITE 1 AC2 4 ASP B 10 HIS B 12 HIS B 44 HOH B 353 SITE 1 AC3 4 ASP C 10 HIS C 12 HIS C 44 HOH C 383 CRYST1 116.859 68.140 60.408 90.00 96.57 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008557 0.000000 0.000986 0.00000 SCALE2 0.000000 0.014676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016664 0.00000