HEADER TRANSFERASE 28-JUL-16 5L16 TITLE CRYSTAL STRUCTURE OF N-TERMINUS TRUNCATED SELENOPHOSPHATE SYNTHETASE TITLE 2 FROM LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SELENOPHOSPHATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.9.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: LMJF_36_5410; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.FAIM,I.R.SILVA,H.M.PEREIRA,M.B.DIAS,M.T.A.SILVA,J.BRANDAO-NETO, AUTHOR 2 O.H.THIEMANN REVDAT 5 04-OCT-23 5L16 1 REMARK REVDAT 4 02-DEC-20 5L16 1 JRNL REVDAT 3 01-JAN-20 5L16 1 REMARK REVDAT 2 17-APR-19 5L16 1 REMARK REVDAT 1 09-AUG-17 5L16 0 JRNL AUTH M.T.A.DA SILVA,I.R.E.SILVA,L.M.FAIM,N.K.BELLINI,M.L.PEREIRA, JRNL AUTH 2 A.L.LIMA,T.C.L.DE JESUS,F.C.COSTA,T.F.WATANABE,H.D.PEREIRA, JRNL AUTH 3 S.R.VALENTINI,C.F.ZANELLI,J.C.BORGES,M.V.B.DIAS, JRNL AUTH 4 J.P.C.DA CUNHA,B.MITTRA,N.W.ANDREWS,O.H.THIEMANN JRNL TITL TRYPANOSOMATID SELENOPHOSPHATE SYNTHETASE STRUCTURE, JRNL TITL 2 FUNCTION AND INTERACTION WITH SELENOCYSTEINE LYASE. JRNL REF PLOS NEGL TROP DIS V. 14 08091 2020 JRNL REFN ESSN 1935-2735 JRNL PMID 33017394 JRNL DOI 10.1371/JOURNAL.PNTD.0008091 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 33411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8546 - 4.3072 0.98 2749 158 0.1666 0.1871 REMARK 3 2 4.3072 - 3.4193 0.99 2666 162 0.1483 0.1699 REMARK 3 3 3.4193 - 2.9872 0.99 2635 150 0.1691 0.2053 REMARK 3 4 2.9872 - 2.7141 1.00 2674 127 0.1706 0.2171 REMARK 3 5 2.7141 - 2.5196 1.00 2660 117 0.1682 0.2148 REMARK 3 6 2.5196 - 2.3711 1.00 2628 133 0.1728 0.2113 REMARK 3 7 2.3711 - 2.2524 1.00 2630 139 0.1619 0.2620 REMARK 3 8 2.2524 - 2.1543 1.00 2630 128 0.1781 0.2351 REMARK 3 9 2.1543 - 2.0714 0.99 2593 157 0.1912 0.2580 REMARK 3 10 2.0714 - 1.9999 1.00 2606 134 0.2052 0.2542 REMARK 3 11 1.9999 - 1.9374 1.00 2623 145 0.2201 0.2910 REMARK 3 12 1.9374 - 1.8820 1.00 2625 142 0.2511 0.3033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 39.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63600 REMARK 3 B22 (A**2) : 6.88680 REMARK 3 B33 (A**2) : -6.25070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2495 REMARK 3 ANGLE : 1.018 3401 REMARK 3 CHIRALITY : 0.072 397 REMARK 3 PLANARITY : 0.005 441 REMARK 3 DIHEDRAL : 12.031 908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 6:37) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3345 15.6785 -32.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.1904 REMARK 3 T33: 0.1117 T12: 0.0599 REMARK 3 T13: 0.0042 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 2.0742 L22: 1.3179 REMARK 3 L33: 3.6079 L12: 0.5405 REMARK 3 L13: 1.4440 L23: 0.7650 REMARK 3 S TENSOR REMARK 3 S11: 0.4215 S12: -0.3294 S13: 0.0387 REMARK 3 S21: -0.0552 S22: -0.1558 S23: -0.0299 REMARK 3 S31: 0.2334 S32: -0.1993 S33: -0.1215 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 38:112) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1119 24.5024 -20.1769 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.1609 REMARK 3 T33: 0.1198 T12: -0.0220 REMARK 3 T13: 0.0288 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 1.9291 L22: 1.8343 REMARK 3 L33: 1.7736 L12: -0.8744 REMARK 3 L13: -0.8297 L23: 0.3181 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.4234 S13: 0.3169 REMARK 3 S21: 0.0924 S22: -0.0322 S23: 0.0222 REMARK 3 S31: -0.3171 S32: -0.0755 S33: -0.1039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 113:214) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1821 9.4025 -21.6384 REMARK 3 T TENSOR REMARK 3 T11: 0.0064 T22: 0.0917 REMARK 3 T33: 0.0159 T12: -0.1023 REMARK 3 T13: -0.0849 T23: -0.0843 REMARK 3 L TENSOR REMARK 3 L11: 1.8429 L22: 1.2035 REMARK 3 L33: 0.8642 L12: -0.0799 REMARK 3 L13: 0.0149 L23: -0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.2372 S12: -0.3564 S13: -0.0258 REMARK 3 S21: 0.0553 S22: -0.2712 S23: -0.2763 REMARK 3 S31: -0.0063 S32: 0.1006 S33: -0.0140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 215:330) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1388 -2.0921 -23.9228 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.0788 REMARK 3 T33: 0.1597 T12: -0.0357 REMARK 3 T13: -0.0875 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.9293 L22: 1.0601 REMARK 3 L33: 1.8779 L12: 0.0220 REMARK 3 L13: 0.1735 L23: 0.3056 REMARK 3 S TENSOR REMARK 3 S11: 0.2718 S12: -0.3098 S13: -0.4066 REMARK 3 S21: 0.2541 S22: -0.1836 S23: -0.1122 REMARK 3 S31: 0.2388 S32: 0.0003 S33: -0.0743 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.882 REMARK 200 RESOLUTION RANGE LOW (A) : 88.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRI-SODIUM CIITRATE PH 5.2, REMARK 280 200MM AMMONIUM SULPHATE, 21% PEG4000., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.96000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.95000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 40.84500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 741 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 749 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 774 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -67 REMARK 465 SER A -66 REMARK 465 HIS A -65 REMARK 465 LYS A -64 REMARK 465 ARG A -63 REMARK 465 PRO A -62 REMARK 465 GLN A -61 REMARK 465 SER A -60 REMARK 465 SER A -59 REMARK 465 ALA A -58 REMARK 465 GLY A -57 REMARK 465 GLU A -56 REMARK 465 SER A -55 REMARK 465 ASN A -54 REMARK 465 GLY A -53 REMARK 465 ALA A -52 REMARK 465 VAL A -51 REMARK 465 ASP A -50 REMARK 465 LEU A -49 REMARK 465 LYS A -48 REMARK 465 THR A -47 REMARK 465 PRO A -46 REMARK 465 ARG A -45 REMARK 465 PHE A -44 REMARK 465 ASP A -43 REMARK 465 PRO A -42 REMARK 465 VAL A -41 REMARK 465 SER A -40 REMARK 465 LEU A -39 REMARK 465 GLY A -38 REMARK 465 LEU A -37 REMARK 465 PRO A -36 REMARK 465 ALA A -35 REMARK 465 GLU A -34 REMARK 465 PHE A -33 REMARK 465 GLN A -32 REMARK 465 LEU A -31 REMARK 465 THR A -30 REMARK 465 ASP A -29 REMARK 465 TYR A -28 REMARK 465 THR A -27 REMARK 465 ARG A -26 REMARK 465 LEU A -25 REMARK 465 LYS A -24 REMARK 465 GLY A -23 REMARK 465 CYS A -22 REMARK 465 SER A -21 REMARK 465 CYS A -20 REMARK 465 LYS A -19 REMARK 465 LEU A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 PRO A -15 REMARK 465 LYS A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 GLN A -8 REMARK 465 GLU A -7 REMARK 465 LEU A -6 REMARK 465 SER A -5 REMARK 465 ALA A -4 REMARK 465 THR A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 GLN A 0 REMARK 465 LYS A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 MET A 5 REMARK 465 THR A 311 REMARK 465 ASN A 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LEU A 159 CG CD1 CD2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP A 315 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 713 O HOH A 718 2.15 REMARK 500 O HOH A 565 O HOH A 637 2.19 REMARK 500 O HOH A 536 O HOH A 753 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 13 49.38 -94.69 REMARK 500 THR A 212 -126.16 -132.71 REMARK 500 ASP A 295 46.12 -108.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 790 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 791 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 793 DISTANCE = 8.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 DBREF 5L16 A -67 330 UNP Q4Q0M0 Q4Q0M0_LEIMA 1 398 SEQRES 1 A 398 MET SER HIS LYS ARG PRO GLN SER SER ALA GLY GLU SER SEQRES 2 A 398 ASN GLY ALA VAL ASP LEU LYS THR PRO ARG PHE ASP PRO SEQRES 3 A 398 VAL SER LEU GLY LEU PRO ALA GLU PHE GLN LEU THR ASP SEQRES 4 A 398 TYR THR ARG LEU LYS GLY CYS SER CYS LYS LEU PRO GLN SEQRES 5 A 398 PRO LYS LEU LEU ALA LEU LEU GLN GLU LEU SER ALA THR SEQRES 6 A 398 PRO GLY GLN LYS ASP VAL GLY MET ASP CYS SER ILE VAL SEQRES 7 A 398 PRO LEU HIS HIS THR ASN SER LYS GLY GLU ALA LEU PHE SEQRES 8 A 398 LEU VAL SER THR THR ASP PHE PHE PHE PRO SER VAL SER SEQRES 9 A 398 ASP PRO PHE LEU GLN GLY GLN ILE GLY ALA ALA ASN VAL SEQRES 10 A 398 LEU SER ASP LEU TYR SER MET GLY ILE PRO ASP CYS ASP SEQRES 11 A 398 THR MET LEU MET LEU LEU ALA ALA SER THR GLU MET ASP SEQRES 12 A 398 GLU HIS GLU ARG LEU ILE THR THR ARG GLU ILE MET LYS SEQRES 13 A 398 GLY PHE ALA GLU ARG ALA ARG LEU ALA THR THR THR VAL SEQRES 14 A 398 THR GLY GLY GLN THR VAL MET ASN PRO TRP PRO LEU ILE SEQRES 15 A 398 GLY GLY VAL ALA MET ALA VAL VAL SER GLU ALA GLU MET SEQRES 16 A 398 VAL ARG PRO THR GLY LEU LEU CYS ALA GLY ASP ILE LEU SEQRES 17 A 398 VAL LEU THR LYS PRO LEU GLY CYS GLN VAL ALA VAL ASN SEQRES 18 A 398 LEU LYS GLN TRP LEU LEU ARG PRO SER PRO LEU TYR GLU SEQRES 19 A 398 GLU ALA ILE ALA GLY HIS ILE SER PRO GLU GLU ILE GLU SEQRES 20 A 398 GLU LEU TYR ASN MET ALA THR ASP SER MET ARG ARG LEU SEQRES 21 A 398 ASN ARG GLU GLY ALA ARG LEU MET ARG LYS HIS GLY ALA SEQRES 22 A 398 HIS GLY ALA THR ASP VAL THR GLY PHE GLY ILE LEU GLY SEQRES 23 A 398 HIS ALA ASN ASN PHE GLY ALA ALA GLN ALA VAL GLY ASP SEQRES 24 A 398 ALA PRO ARG SER LEU CYS LEU VAL LEU GLU ARG LEU PRO SEQRES 25 A 398 MET PHE LYS THR ALA VAL ALA ALA SER LYS GLN MET ASN SEQRES 26 A 398 ASP LYS TYR ARG LEU LEU GLU GLY TYR SER ALA GLU THR SEQRES 27 A 398 SER GLY GLY LEU LEU VAL ALA PHE PRO SER THR THR ALA SEQRES 28 A 398 ALA ALA ALA PHE CYS ALA GLU LEU THR ALA VAL ASP GLY SEQRES 29 A 398 GLY CYS PRO SER TRP ILE VAL GLY HIS VAL GLU ASP ARG SEQRES 30 A 398 ALA THR ASN ALA VAL ASP GLY VAL TYR ALA ARG LEU LYS SEQRES 31 A 398 ASP GLY TYR GLU ILE VAL GLU VAL HET SO4 A 401 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *293(H2 O) HELIX 1 AA1 ASP A 37 SER A 55 1 19 HELIX 2 AA2 ASP A 75 ALA A 97 1 23 HELIX 3 AA3 ALA A 125 MET A 127 5 3 HELIX 4 AA4 GLY A 147 ARG A 160 1 14 HELIX 5 AA5 SER A 162 ILE A 169 1 8 HELIX 6 AA6 SER A 174 ARG A 191 1 18 HELIX 7 AA7 ASN A 193 MET A 200 1 8 HELIX 8 AA8 ARG A 201 GLY A 204 5 4 HELIX 9 AA9 PHE A 214 GLN A 227 1 14 HELIX 10 AB1 PHE A 246 MET A 256 1 11 HELIX 11 AB2 SER A 280 ASP A 295 1 16 SHEET 1 AA1 5 SER A 8 THR A 15 0 SHEET 2 AA1 5 ALA A 21 PHE A 31 -1 O LEU A 24 N VAL A 10 SHEET 3 AA1 5 LEU A 113 SER A 123 -1 O ALA A 120 N VAL A 25 SHEET 4 AA1 5 THR A 63 SER A 71 -1 N LEU A 67 O GLY A 115 SHEET 5 AA1 5 VAL A 101 ASN A 109 1 O VAL A 107 N ALA A 70 SHEET 1 AA2 6 ALA A 208 ASP A 210 0 SHEET 2 AA2 6 LEU A 274 PHE A 278 -1 O LEU A 275 N THR A 209 SHEET 3 AA2 6 ILE A 139 LEU A 142 -1 N VAL A 141 O VAL A 276 SHEET 4 AA2 6 TRP A 301 ASP A 308 -1 O TRP A 301 N LEU A 142 SHEET 5 AA2 6 LEU A 236 MET A 245 -1 N VAL A 239 O HIS A 305 SHEET 6 AA2 6 ALA A 319 GLU A 329 1 O VAL A 328 N LEU A 243 CISPEP 1 VAL A 229 GLY A 230 0 -6.80 SITE 1 AC1 6 HIS A 14 THR A 15 ASN A 16 SER A 17 SITE 2 AC1 6 LYS A 18 HOH A 640 CRYST1 55.950 81.690 177.920 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005621 0.00000