HEADER HYDROLASE/HYDROLASE INHIBITOR 29-JUL-16 5L20 TITLE CRYSTAL STRUCTURE OF A CLOSTRIPAIN (BT_0727) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON ATCC 29148 IN COMPLEX WITH PEPTIDE INHIBITOR BTN- TITLE 3 VLTK-AOMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLOSTRIPAIN-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CLOSTRIPAIN-RELATED PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PEPTIDE INHIBITOR BTN-VLTK-AOMK; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 ATCC: 29148; SOURCE 7 GENE: BT_0727; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET23B; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 15 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 16 ORGANISM_TAXID: 226186; SOURCE 17 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 18 ATCC: 29148; SOURCE 19 GENE: BT_0727; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET23B; SOURCE 25 MOL_ID: 3; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS CLOSTRIPAIN, PEPTIDASE, MICROBIOME, INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.WOLAN,E.J.RONCASE REVDAT 3 15-NOV-23 5L20 1 LINK ATOM REVDAT 2 25-DEC-19 5L20 1 REMARK REVDAT 1 02-AUG-17 5L20 0 JRNL AUTH D.W.WOLAN,E.J.RONCASE JRNL TITL CRYSTAL STRUCTURE OF A CLOSTRIPAIN (BT_0727) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON ATCC 29148 IN COMPLEX WITH JRNL TITL 3 PEPTIDE INHIBITOR BTN-VLTK-AOMK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 54597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9162 - 3.8627 0.98 3195 168 0.1362 0.1637 REMARK 3 2 3.8627 - 3.0662 0.99 3110 157 0.1306 0.1691 REMARK 3 3 3.0662 - 2.6787 0.97 3010 145 0.1489 0.1531 REMARK 3 4 2.6787 - 2.4338 0.99 3066 139 0.1495 0.1767 REMARK 3 5 2.4338 - 2.2593 0.98 2990 169 0.1499 0.1736 REMARK 3 6 2.2593 - 2.1261 0.96 2944 150 0.1413 0.1879 REMARK 3 7 2.1261 - 2.0196 0.98 2987 171 0.1422 0.1664 REMARK 3 8 2.0196 - 1.9317 0.98 2988 148 0.1525 0.1874 REMARK 3 9 1.9317 - 1.8574 0.98 3003 146 0.1591 0.2187 REMARK 3 10 1.8574 - 1.7933 0.95 2899 138 0.1612 0.1677 REMARK 3 11 1.7933 - 1.7372 0.97 2941 181 0.1641 0.1884 REMARK 3 12 1.7372 - 1.6875 0.97 2929 167 0.1651 0.2103 REMARK 3 13 1.6875 - 1.6431 0.97 2945 157 0.1674 0.2056 REMARK 3 14 1.6431 - 1.6030 0.97 2942 163 0.1730 0.2037 REMARK 3 15 1.6030 - 1.5666 0.91 2740 152 0.1779 0.2002 REMARK 3 16 1.5666 - 1.5332 0.75 2270 134 0.1803 0.2135 REMARK 3 17 1.5332 - 1.5026 0.63 1932 90 0.2070 0.2184 REMARK 3 18 1.5026 - 1.4742 0.54 1636 84 0.2233 0.2347 REMARK 3 19 1.4742 - 1.4479 0.44 1341 70 0.2446 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2804 REMARK 3 ANGLE : 1.299 3826 REMARK 3 CHIRALITY : 0.055 434 REMARK 3 PLANARITY : 0.007 483 REMARK 3 DIHEDRAL : 11.699 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, 30% PEG 6000, 2M REMARK 280 LICL, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.09300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.09300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.60350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.44250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.60350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.44250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.09300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.60350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.44250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.09300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.60350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.44250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 781 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PEPTIDE INHIBITOR BTN-VLTK-AOMK IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PEPTIDE INHIBITOR BTN-VLTK-AOMK REMARK 400 CHAIN: C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 30 REMARK 465 GLU A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 33 REMARK 465 PRO A 34 REMARK 465 SER A 151 REMARK 465 LYS A 152 REMARK 465 SER A 153 REMARK 465 ARG A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 LEU A 157 REMARK 465 ARG A 158 REMARK 465 THR A 159 REMARK 465 LYS A 160 REMARK 465 MET A 161 REMARK 465 HIS A 162 REMARK 465 TRP A 163 REMARK 465 GLU A 164 REMARK 465 TYR A 165 REMARK 465 GLU A 166 REMARK 465 ASN A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 MET A 170 REMARK 465 THR A 171 REMARK 465 ARG A 172 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 35 CG1 CG2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 GLU B 395 CG CD OE1 OE2 REMARK 470 BTN C 401 C8 C7 C2 S1 C6 C5 N1 REMARK 470 BTN C 401 C3 O3 N2 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 564 O HOH B 764 2.06 REMARK 500 O HOH B 701 O HOH B 738 2.11 REMARK 500 O HOH B 534 O HOH B 765 2.16 REMARK 500 OE1 GLU B 290 O HOH B 501 2.17 REMARK 500 ND2 ASN B 283 O HOH B 502 2.17 REMARK 500 O HOH B 511 O HOH B 557 2.19 REMARK 500 O HOH B 608 O HOH B 776 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH B 697 4555 2.01 REMARK 500 O HOH A 538 O HOH B 753 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 MET B 356 CG - SD - CE ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -52.58 68.69 REMARK 500 LEU A 71 47.49 -109.12 REMARK 500 CYS A 140 -167.36 172.00 REMARK 500 CYS A 140 177.04 177.33 REMARK 500 MET A 143 44.30 -143.52 REMARK 500 SER B 230 -157.73 -130.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS PHYSICALLY CLEAVED AFTER ARGININE 172 DBREF 5L20 A 30 172 UNP Q8A9T8 Q8A9T8_BACTN 30 172 DBREF 5L20 B 173 393 UNP Q8A9T8 Q8A9T8_BACTN 173 393 DBREF 5L20 C 401 405 PDB 5L20 5L20 401 405 SEQADV 5L20 LEU B 394 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 GLU B 395 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 396 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 397 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 398 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 399 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 400 UNP Q8A9T8 EXPRESSION TAG SEQADV 5L20 HIS B 401 UNP Q8A9T8 EXPRESSION TAG SEQRES 1 A 143 GLU GLU PRO VAL PRO VAL PRO THR GLU GLN THR VAL PHE SEQRES 2 A 143 MET TYR LEU PRO TRP SER ASP ASN LEU THR SER ASN PHE SEQRES 3 A 143 TYR GLN ASN ILE SER ASP LEU GLU SER VAL VAL GLU LYS SEQRES 4 A 143 ASN ILE LEU LYS ASP GLU ARG ILE ILE ILE PHE MET CYS SEQRES 5 A 143 THR THR ALA THR LYS ALA THR LEU PHE GLU LEU ALA TYR SEQRES 6 A 143 GLU ASN GLY LYS SER VAL HIS LYS THR LEU LYS ASN TYR SEQRES 7 A 143 THR ASP PRO ALA TYR THR THR ALA GLU GLY ILE THR SER SEQRES 8 A 143 ILE LEU ASN ASP VAL GLN ARG TYR SER PRO THR LYS ARG SEQRES 9 A 143 TYR SER MET VAL ILE GLY CYS HIS GLY MET GLY TRP ILE SEQRES 10 A 143 PRO VAL SER ASN SER LYS SER ARG SER GLY LEU ARG THR SEQRES 11 A 143 LYS MET HIS TRP GLU TYR GLU ASN VAL PRO MET THR ARG SEQRES 1 B 229 TYR PHE GLY GLY LEU ASN ALA GLN TYR GLN THR ASP ILE SEQRES 2 B 229 THR THR LEU ALA LYS GLY ILE SER ASN ALA GLY LEU LYS SEQRES 3 B 229 MET GLU TYR ILE LEU PHE ASP ASP CYS TYR MET SER SER SEQRES 4 B 229 ILE GLU VAL ALA TYR ALA LEU LYS ASP VAL THR ASP TYR SEQRES 5 B 229 LEU ILE GLY SER THR SER GLU VAL MET ALA TYR GLY MET SEQRES 6 B 229 PRO TYR ALA GLU ILE GLY GLN TYR LEU ILE GLY LYS VAL SEQRES 7 B 229 ASP TYR ALA GLY ILE CYS ASP GLY PHE TYR SER PHE TYR SEQRES 8 B 229 SER THR TYR SER THR PRO CYS GLY THR ILE ALA VAL THR SEQRES 9 B 229 ASP CYS SER GLU LEU ASP ASN LEU ALA THR ILE MET LYS SEQRES 10 B 229 GLU ILE ASN HIS ARG TYR THR PHE ASP PRO SER LEU THR SEQRES 11 B 229 SER SER LEU GLN ARG LEU ASP GLY TYR TYR PRO VAL ILE SEQRES 12 B 229 PHE PHE ASP TYR GLY ASP TYR VAL SER LYS LEU CYS PRO SEQRES 13 B 229 ASP GLU THR LEU VAL ALA ARG PHE ASN GLU GLN LEU ASN SEQRES 14 B 229 ARG THR VAL PRO PHE LYS ARG ASN THR GLU TYR PHE TYR SEQRES 15 B 229 SER MET SER ARG GLY GLU VAL LYS ILE ASN THR PHE SER SEQRES 16 B 229 GLY ILE THR ILE SER ASP PRO SER THR HIS SER LEU ALA SEQRES 17 B 229 SER LYS LYS GLU GLU THR ALA TRP TYR ALA ALA THR HIS SEQRES 18 B 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 5 BTN VAL LEU THR CKC HET BTN C 401 4 HET CKC C 405 10 HETNAM BTN BIOTIN HETNAM CKC (3S)-3,7-DIAMINOHEPTAN-2-ONE FORMUL 3 BTN C10 H16 N2 O3 S FORMUL 3 CKC C7 H16 N2 O FORMUL 4 HOH *441(H2 O) HELIX 1 AA1 LEU A 51 GLU A 67 1 17 HELIX 2 AA2 THR A 114 SER A 129 1 16 HELIX 3 AA3 ASN B 178 GLN B 180 5 3 HELIX 4 AA4 ASP B 184 ALA B 195 1 12 HELIX 5 AA5 SER B 211 LEU B 218 1 8 HELIX 6 AA6 PRO B 238 ILE B 247 1 10 HELIX 7 AA7 ASP B 251 THR B 265 1 15 HELIX 8 AA8 GLU B 280 TYR B 295 1 16 HELIX 9 AA9 ASP B 298 LEU B 305 5 8 HELIX 10 AB1 TYR B 319 CYS B 327 1 9 HELIX 11 AB2 ASP B 329 VAL B 344 1 16 HELIX 12 AB3 HIS B 377 SER B 381 5 5 HELIX 13 AB4 LYS B 382 GLU B 385 5 4 HELIX 14 AB5 THR B 386 HIS B 393 1 8 SHEET 1 AA1 9 LYS A 98 THR A 108 0 SHEET 2 AA1 9 LYS A 86 GLU A 95 -1 N GLU A 95 O LYS A 98 SHEET 3 AA1 9 GLU A 74 THR A 83 -1 N ILE A 78 O PHE A 90 SHEET 4 AA1 9 GLN A 39 LEU A 45 1 N VAL A 41 O ARG A 75 SHEET 5 AA1 9 ARG A 133 GLY A 139 1 O VAL A 137 N TYR A 44 SHEET 6 AA1 9 MET B 199 ASP B 205 1 O LEU B 203 N ILE A 138 SHEET 7 AA1 9 THR B 222 GLY B 227 1 O ILE B 226 N PHE B 204 SHEET 8 AA1 9 THR B 272 ASP B 277 -1 O THR B 276 N LEU B 225 SHEET 9 AA1 9 PHE B 346 ASN B 349 -1 O PHE B 346 N VAL B 275 SHEET 1 AA2 3 HIS A 141 GLY A 142 0 SHEET 2 AA2 3 PHE B 174 GLY B 175 -1 O GLY B 175 N HIS A 141 SHEET 3 AA2 3 GLN B 182 THR B 183 -1 O THR B 183 N PHE B 174 SHEET 1 AA3 2 PHE B 317 ASP B 318 0 SHEET 2 AA3 2 THR B 370 ILE B 371 -1 O ILE B 371 N PHE B 317 SHEET 1 AA4 2 TYR B 352 SER B 355 0 SHEET 2 AA4 2 GLY B 359 LYS B 362 -1 O VAL B 361 N PHE B 353 LINK SG CYS B 207 CAK CKC C 405 1555 1555 1.87 LINK C11 BTN C 401 N VAL C 402 1555 1555 1.32 LINK C THR C 404 N CKC C 405 1555 1555 1.32 CISPEP 1 TYR B 312 PRO B 313 0 -5.84 CRYST1 79.207 102.885 84.186 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011878 0.00000