HEADER ISOMERASE 23-MAY-16 5L3J TITLE ESCHERICHIA COLI DNA GYRASE B IN COMPLEX WITH BENZOTHIAZOLE-BASED TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 15-392; COMPND 5 SYNONYM: TYPE IIA TOPOISOMERASE SUBUNIT GYRB; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GYRB, Z5190, ECS4634; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GYRASE B, INHIBITOR, COMPLEX, GYRB, PROTEROS BIOSTRUCTURES, KEYWDS 2 ISOMERASE, PROTEROS BIOSTRUCTURES GMBH EXPDTA X-RAY DIFFRACTION AUTHOR M.GJORGJIEVA,T.TOMASIC,M.BARANCOKOVA,S.KATSAMAKAS,J.ILAS,S.MONTALVAO, AUTHOR 2 P.TAMMELLA,L.PETERLIN MASIC,D.KIKELJ REVDAT 2 26-OCT-16 5L3J 1 JRNL REVDAT 1 31-AUG-16 5L3J 0 JRNL AUTH M.GJORGJIEVA,T.TOMASIC,M.BARANCOKOVA,S.KATSAMAKAS,J.ILAS, JRNL AUTH 2 P.TAMMELA,L.PETERLIN MASIC,D.KIKELJ JRNL TITL DISCOVERY OF BENZOTHIAZOLE SCAFFOLD-BASED DNA GYRASE B JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 59 8941 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27541007 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00864 REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 8772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.4710 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.5870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.470 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.380 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2748 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1824 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3741 ; 1.113 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4375 ; 1.409 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;36.210 ;24.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;12.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 429 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3165 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 549 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4980 11.7830 14.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.3280 REMARK 3 T33: 0.1866 T12: -0.0001 REMARK 3 T13: 0.0760 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.5796 L22: 2.8628 REMARK 3 L33: 3.6684 L12: -0.4411 REMARK 3 L13: -1.4741 L23: -0.9196 REMARK 3 S TENSOR REMARK 3 S11: 0.3420 S12: -0.1202 S13: 0.7261 REMARK 3 S21: 0.0423 S22: -0.0110 S23: 0.0388 REMARK 3 S31: -0.7597 S32: -0.0227 S33: -0.3309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2720 -8.0500 22.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.4435 REMARK 3 T33: 0.0331 T12: -0.0048 REMARK 3 T13: 0.0060 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.7334 L22: 3.4354 REMARK 3 L33: 1.6111 L12: -1.2071 REMARK 3 L13: 0.9807 L23: -0.6221 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0835 S13: -0.1526 REMARK 3 S21: -0.0436 S22: 0.0650 S23: -0.1965 REMARK 3 S31: 0.3142 S32: 0.1065 S33: -0.0432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 70.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25% PEG3350, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.14300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.79250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.14300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.79250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 LYS A 103 REMARK 465 PHE A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 ASN A 107 REMARK 465 SER A 108 REMARK 465 TYR A 109 REMARK 465 LYS A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 HIS A 116 REMARK 465 GLY A 117 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CG CD CE NZ REMARK 480 ARG A 22 NE CZ NH1 NH2 REMARK 480 ILE A 27 CD1 REMARK 480 LYS A 57 CG CD CE NZ REMARK 480 ILE A 59 CD1 REMARK 480 ILE A 60 CD1 REMARK 480 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 82 CD1 REMARK 480 GLU A 85 CG CD OE1 OE2 REMARK 480 GLU A 86 CG CD OE1 OE2 REMARK 480 GLU A 92 CD OE1 OE2 REMARK 480 ILE A 94 CD1 REMARK 480 HIS A 99 CG ND1 CD2 CE1 NE2 REMARK 480 VAL A 118 CG1 CG2 REMARK 480 GLN A 128 CD OE1 NE2 REMARK 480 LYS A 129 NZ REMARK 480 ILE A 134 CD1 REMARK 480 GLU A 137 CG CD OE1 OE2 REMARK 480 LYS A 139 CD CE NZ REMARK 480 VAL A 149 CG1 CG2 REMARK 480 GLU A 161 CG CD OE1 OE2 REMARK 480 LEU A 173 CD1 CD2 REMARK 480 GLU A 174 CG CD OE1 OE2 REMARK 480 GLU A 185 CG CD OE1 OE2 REMARK 480 LYS A 189 CG CD CE NZ REMARK 480 LYS A 212 CE NZ REMARK 480 GLU A 219 CG CD OE1 OE2 REMARK 480 LYS A 223 NZ REMARK 480 LYS A 231 NZ REMARK 480 LYS A 247 CG CD CE NZ REMARK 480 GLN A 263 CD OE1 NE2 REMARK 480 ILE A 266 CD1 REMARK 480 LYS A 299 CD CE NZ REMARK 480 LYS A 304 CG CD CE NZ REMARK 480 LYS A 305 CG CD CE NZ REMARK 480 LYS A 307 CG CD CE NZ REMARK 480 SER A 309 OG REMARK 480 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 331 CD CE NZ REMARK 480 LYS A 369 NZ REMARK 480 ARG A 380 CD NE CZ NH1 NH2 REMARK 480 ARG A 386 CD NE CZ NH1 NH2 REMARK 480 ARG A 389 CD NE CZ NH1 NH2 REMARK 480 GLU A 390 CG CD OE1 OE2 REMARK 480 MET A 391 CG SD CE REMARK 480 THR A 392 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 96 -48.07 -133.61 REMARK 500 ARG A 136 -83.85 -114.67 REMARK 500 GLU A 137 -94.33 -78.66 REMARK 500 THR A 177 -69.80 -96.49 REMARK 500 SER A 199 -81.35 -17.62 REMARK 500 HIS A 217 55.56 -142.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6G9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 402 DBREF 5L3J A 15 392 UNP P0AES6 GYRB_ECOLI 15 392 SEQRES 1 A 378 GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR ILE SEQRES 2 A 378 GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET VAL SEQRES 3 A 378 PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU ALA SEQRES 4 A 378 GLY HIS CYS LYS GLU ILE ILE VAL THR ILE HIS ALA ASP SEQRES 5 A 378 ASN SER VAL SER VAL GLN ASP ASP GLY ARG GLY ILE PRO SEQRES 6 A 378 THR GLY ILE HIS PRO GLU GLU GLY VAL SER ALA ALA GLU SEQRES 7 A 378 VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE ASP SEQRES 8 A 378 ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY VAL SEQRES 9 A 378 GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU GLU SEQRES 10 A 378 LEU VAL ILE GLN ARG GLU GLY LYS ILE HIS ARG GLN ILE SEQRES 11 A 378 TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL THR SEQRES 12 A 378 GLY GLU THR GLU LYS THR GLY THR MET VAL ARG PHE TRP SEQRES 13 A 378 PRO SER LEU GLU THR PHE THR ASN VAL THR GLU PHE GLU SEQRES 14 A 378 TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER PHE SEQRES 15 A 378 LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS ARG SEQRES 16 A 378 ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY GLY ILE SEQRES 17 A 378 LYS ALA PHE VAL GLU TYR LEU ASN LYS ASN LYS THR PRO SEQRES 18 A 378 ILE HIS PRO ASN ILE PHE TYR PHE SER THR GLU LYS ASP SEQRES 19 A 378 GLY ILE GLY VAL GLU VAL ALA LEU GLN TRP ASN ASP GLY SEQRES 20 A 378 PHE GLN GLU ASN ILE TYR CYS PHE THR ASN ASN ILE PRO SEQRES 21 A 378 GLN ARG ASP GLY GLY THR HIS LEU ALA GLY PHE ARG ALA SEQRES 22 A 378 ALA MET THR ARG THR LEU ASN ALA TYR MET ASP LYS GLU SEQRES 23 A 378 GLY TYR SER LYS LYS ALA LYS VAL SER ALA THR GLY ASP SEQRES 24 A 378 ASP ALA ARG GLU GLY LEU ILE ALA VAL VAL SER VAL LYS SEQRES 25 A 378 VAL PRO ASP PRO LYS PHE SER SER GLN THR LYS ASP LYS SEQRES 26 A 378 LEU VAL SER SER GLU VAL LYS SER ALA VAL GLU GLN GLN SEQRES 27 A 378 MET ASN GLU LEU LEU ALA GLU TYR LEU LEU GLU ASN PRO SEQRES 28 A 378 THR ASP ALA LYS ILE VAL VAL GLY LYS ILE ILE ASP ALA SEQRES 29 A 378 ALA ARG ALA ARG GLU ALA ALA ARG ARG ALA ARG GLU MET SEQRES 30 A 378 THR HET 6G9 A 401 30 HET IOD A 402 1 HETNAM 6G9 2-[[2-[[4,5-BIS(BROMANYL)-1~{H}-PYRROL-2- HETNAM 2 6G9 YL]CARBONYLAMINO]-1,3-BENZOTHIAZOL-6-YL]AMINO]-2- HETNAM 3 6G9 OXIDANYLIDENE-ETHANOIC ACID HETNAM IOD IODIDE ION FORMUL 2 6G9 C14 H8 BR2 N4 O4 S FORMUL 3 IOD I 1- FORMUL 4 HOH *6(H2 O) HELIX 1 AA1 ASP A 17 ARG A 22 1 6 HELIX 2 AA2 ARG A 22 GLY A 28 1 7 HELIX 3 AA3 GLY A 33 ALA A 53 1 21 HELIX 4 AA4 SER A 89 MET A 95 1 7 HELIX 5 AA5 GLY A 119 LEU A 126 1 8 HELIX 6 AA6 GLU A 183 ASN A 198 1 16 HELIX 7 AA7 GLY A 221 LYS A 231 1 11 HELIX 8 AA8 THR A 280 GLU A 300 1 21 HELIX 9 AA9 GLY A 301 LYS A 307 1 7 HELIX 10 AB1 THR A 311 GLU A 317 1 7 HELIX 11 AB2 SER A 342 ASN A 364 1 23 HELIX 12 AB3 ASN A 364 MET A 391 1 28 SHEET 1 AA1 3 VAL A 149 PRO A 150 0 SHEET 2 AA1 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA1 3 ALA A 155 GLU A 159 -1 O ALA A 155 N ARG A 142 SHEET 1 AA2 8 VAL A 149 PRO A 150 0 SHEET 2 AA2 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA2 8 SER A 127 GLN A 135 -1 N LEU A 132 O GLN A 143 SHEET 4 AA2 8 GLY A 164 PRO A 171 -1 O ARG A 168 N GLU A 131 SHEET 5 AA2 8 SER A 68 ASP A 73 -1 N ASP A 73 O THR A 165 SHEET 6 AA2 8 GLU A 58 HIS A 64 -1 N ILE A 60 O GLN A 72 SHEET 7 AA2 8 SER A 202 ASP A 207 1 O ARG A 206 N ILE A 63 SHEET 8 AA2 8 LYS A 212 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 AA3 5 PHE A 241 LYS A 247 0 SHEET 2 AA3 5 ILE A 250 TRP A 258 -1 O VAL A 252 N THR A 245 SHEET 3 AA3 5 LEU A 319 LYS A 326 -1 O LYS A 326 N GLY A 251 SHEET 4 AA3 5 ASN A 265 THR A 270 1 N TYR A 267 O ALA A 321 SHEET 5 AA3 5 ILE A 273 GLN A 275 -1 O ILE A 273 N THR A 270 SHEET 1 AA4 2 GLY A 278 GLY A 279 0 SHEET 2 AA4 2 LYS A 339 LEU A 340 1 O LEU A 340 N GLY A 278 SITE 1 AC1 12 VAL A 43 ASN A 46 GLU A 50 HIS A 55 SITE 2 AC1 12 VAL A 71 ASP A 73 ARG A 76 GLY A 77 SITE 3 AC1 12 ILE A 78 PRO A 79 THR A 165 VAL A 167 SITE 1 AC2 3 GLY A 24 MET A 25 GLN A 335 CRYST1 116.286 49.585 70.212 90.00 93.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008599 0.000000 0.000522 0.00000 SCALE2 0.000000 0.020167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014269 0.00000