HEADER PROTEIN TRANSPORT 24-MAY-16 5L3V TITLE STRUCTURE OF THE CRENARCHAEAL SRP54 GTPASE BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SRP54; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: SRP54, SSO0971; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CO-TRANSLATIONAL PROTEIN TARGETING, SIGNAL RECOGNITION PARTICLE, KEYWDS 2 GTPASE, SIGNALING PROTEIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.BANGE,K.WILD,I.SINNING REVDAT 3 10-JAN-24 5L3V 1 REMARK REVDAT 2 20-JUL-16 5L3V 1 JRNL REVDAT 1 08-JUN-16 5L3V 0 JRNL AUTH K.WILD,G.BANGE,D.MOTIEJUNAS,J.KRIBELBAUER,A.HENDRICKS, JRNL AUTH 2 B.SEGNITZ,R.C.WADE,I.SINNING JRNL TITL STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPTATION OF JRNL TITL 2 THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. JRNL REF J.MOL.BIOL. V. 428 2880 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27241309 JRNL DOI 10.1016/J.JMB.2016.05.015 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1419 - 5.2566 0.99 2774 146 0.1754 0.2137 REMARK 3 2 5.2566 - 4.1739 1.00 2675 134 0.1480 0.1825 REMARK 3 3 4.1739 - 3.6467 1.00 2631 144 0.1702 0.2164 REMARK 3 4 3.6467 - 3.3135 1.00 2600 165 0.1776 0.2388 REMARK 3 5 3.3135 - 3.0761 1.00 2605 134 0.2041 0.2247 REMARK 3 6 3.0761 - 2.8948 1.00 2642 118 0.2018 0.2551 REMARK 3 7 2.8948 - 2.7499 1.00 2599 134 0.1903 0.2669 REMARK 3 8 2.7499 - 2.6302 1.00 2575 129 0.1843 0.2564 REMARK 3 9 2.6302 - 2.5289 1.00 2612 134 0.1708 0.2006 REMARK 3 10 2.5289 - 2.4417 1.00 2578 137 0.1726 0.2477 REMARK 3 11 2.4417 - 2.3654 1.00 2564 135 0.1790 0.2027 REMARK 3 12 2.3654 - 2.2978 0.99 2552 138 0.2147 0.3103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4674 REMARK 3 ANGLE : 1.163 6315 REMARK 3 CHIRALITY : 0.071 718 REMARK 3 PLANARITY : 0.005 793 REMARK 3 DIHEDRAL : 13.874 1767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9095 87.1003 30.1301 REMARK 3 T TENSOR REMARK 3 T11: 0.7315 T22: 0.7274 REMARK 3 T33: 0.7445 T12: 0.2090 REMARK 3 T13: -0.2944 T23: 0.1696 REMARK 3 L TENSOR REMARK 3 L11: 3.2921 L22: 3.1079 REMARK 3 L33: 2.3126 L12: -0.0456 REMARK 3 L13: -1.1168 L23: 2.3859 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0410 S13: -0.5685 REMARK 3 S21: -0.3109 S22: 0.0973 S23: 0.5108 REMARK 3 S31: 0.3853 S32: -0.2059 S33: -0.2663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5529 93.2014 42.8433 REMARK 3 T TENSOR REMARK 3 T11: 0.6404 T22: 0.7218 REMARK 3 T33: 0.5491 T12: 0.4390 REMARK 3 T13: -0.0218 T23: 0.2339 REMARK 3 L TENSOR REMARK 3 L11: 0.5414 L22: 1.4790 REMARK 3 L33: 0.3978 L12: -0.2338 REMARK 3 L13: 0.2515 L23: -0.5898 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.1572 S13: 0.1437 REMARK 3 S21: -0.1467 S22: 0.1250 S23: 0.4180 REMARK 3 S31: -0.0191 S32: -0.1126 S33: 0.2357 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7198 98.1174 34.7778 REMARK 3 T TENSOR REMARK 3 T11: 0.7727 T22: 0.5816 REMARK 3 T33: 0.4287 T12: 0.3726 REMARK 3 T13: -0.0886 T23: 0.1238 REMARK 3 L TENSOR REMARK 3 L11: 0.1081 L22: 1.8312 REMARK 3 L33: 2.1328 L12: -0.0331 REMARK 3 L13: 0.2153 L23: -1.2479 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.1896 S13: 0.2789 REMARK 3 S21: -0.2508 S22: -0.0003 S23: -0.0092 REMARK 3 S31: -0.3404 S32: 0.0022 S33: 0.2951 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5395 72.2142 52.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.5043 T22: 0.3414 REMARK 3 T33: 0.2761 T12: 0.2165 REMARK 3 T13: -0.0064 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.1484 L22: 0.6026 REMARK 3 L33: 0.2044 L12: -0.8906 REMARK 3 L13: 0.3063 L23: 0.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.1707 S13: 0.2153 REMARK 3 S21: -0.1704 S22: -0.0127 S23: 0.1906 REMARK 3 S31: -0.2560 S32: -0.2211 S33: 0.0165 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7804 60.1061 59.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.4600 T22: 0.3321 REMARK 3 T33: 0.2730 T12: 0.1748 REMARK 3 T13: 0.0786 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.9373 L22: 1.3867 REMARK 3 L33: 2.0287 L12: 0.1859 REMARK 3 L13: -0.0695 L23: -0.1363 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1373 S13: -0.2162 REMARK 3 S21: 0.0185 S22: -0.0047 S23: 0.2179 REMARK 3 S31: 0.3521 S32: -0.2375 S33: 0.0165 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4498 71.5830 68.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.4360 T22: 0.4691 REMARK 3 T33: 0.2336 T12: 0.1696 REMARK 3 T13: 0.0144 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.4914 L22: 1.3754 REMARK 3 L33: 2.1683 L12: -0.7535 REMARK 3 L13: -0.9227 L23: -0.4262 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.2390 S13: -0.1310 REMARK 3 S21: 0.1248 S22: 0.0353 S23: 0.2389 REMARK 3 S31: -0.2009 S32: -0.4234 S33: -0.0091 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0626 77.4604 51.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.5786 T22: 0.4643 REMARK 3 T33: 0.3066 T12: 0.3978 REMARK 3 T13: -0.0852 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.9093 L22: 0.7335 REMARK 3 L33: 0.1627 L12: -0.0863 REMARK 3 L13: -0.0743 L23: -0.0276 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: 0.2710 S13: 0.1701 REMARK 3 S21: -0.1432 S22: 0.0247 S23: 0.3256 REMARK 3 S31: -0.2838 S32: -0.3335 S33: 0.1559 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5253 96.1751 73.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.8539 T22: 0.4816 REMARK 3 T33: 0.4738 T12: 0.2618 REMARK 3 T13: -0.0460 T23: 0.1138 REMARK 3 L TENSOR REMARK 3 L11: 3.7062 L22: 0.4148 REMARK 3 L33: 2.1118 L12: 0.9162 REMARK 3 L13: 1.3235 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.1559 S12: -0.4561 S13: -0.1470 REMARK 3 S21: 0.5124 S22: 0.0006 S23: 0.1479 REMARK 3 S31: -0.0008 S32: 0.2303 S33: 0.0706 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7872 105.8970 62.6105 REMARK 3 T TENSOR REMARK 3 T11: 0.6110 T22: 0.4766 REMARK 3 T33: 0.4452 T12: 0.3144 REMARK 3 T13: -0.0080 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.6591 L22: 0.0669 REMARK 3 L33: 0.1146 L12: -0.1931 REMARK 3 L13: 0.1817 L23: -0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: 0.0521 S13: 0.2088 REMARK 3 S21: -0.0871 S22: -0.1298 S23: -0.2457 REMARK 3 S31: 0.1302 S32: 0.2865 S33: 0.0683 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3964 116.2392 58.6887 REMARK 3 T TENSOR REMARK 3 T11: 0.5531 T22: 0.3078 REMARK 3 T33: 0.4079 T12: 0.1970 REMARK 3 T13: 0.0558 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.8008 L22: 1.8487 REMARK 3 L33: 0.8888 L12: -0.5032 REMARK 3 L13: -0.0846 L23: -0.2757 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.1217 S13: -0.3535 REMARK 3 S21: 0.2429 S22: 0.0587 S23: 0.2146 REMARK 3 S31: 0.1986 S32: -0.0529 S33: -0.0439 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L3S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 6.0, 15 % (W/V) PEG REMARK 280 8000, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.82667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.41333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.41333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 436 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 201 O HOH A 401 2.05 REMARK 500 O3B GDP A 301 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 -64.91 172.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 DBREF 5L3V A 1 293 UNP Q97ZE7 SRP54_SULSO 1 293 DBREF 5L3V B 1 293 UNP Q97ZE7 SRP54_SULSO 1 293 SEQADV 5L3V HIS A -5 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS A -4 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS A -3 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS A -2 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS A -1 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS A 0 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B -5 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B -4 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B -3 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B -2 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B -1 UNP Q97ZE7 EXPRESSION TAG SEQADV 5L3V HIS B 0 UNP Q97ZE7 EXPRESSION TAG SEQRES 1 A 299 HIS HIS HIS HIS HIS HIS MET LEU GLU ASN ILE ARG ASP SEQRES 2 A 299 ALA VAL ARG LYS PHE LEU THR GLY SER THR PRO TYR GLU SEQRES 3 A 299 LYS ALA VAL ASP GLU PHE ILE LYS ASP LEU GLN LYS SER SEQRES 4 A 299 LEU ILE SER SER ASP VAL ASN VAL LYS LEU VAL PHE SER SEQRES 5 A 299 LEU THR ALA LYS ILE LYS GLU ARG LEU ASN LYS GLU LYS SEQRES 6 A 299 PRO PRO SER VAL LEU GLU ARG LYS GLU TRP PHE ILE SER SEQRES 7 A 299 ILE VAL TYR ASP GLU LEU SER LYS LEU PHE GLY GLY ASP SEQRES 8 A 299 LYS GLU PRO ASN VAL ASN PRO THR LYS LEU PRO PHE ILE SEQRES 9 A 299 ILE MET LEU VAL GLY VAL GLN GLY SER GLY LYS THR THR SEQRES 10 A 299 THR ALA GLY LYS LEU ALA TYR PHE TYR LYS LYS ARG GLY SEQRES 11 A 299 TYR LYS VAL GLY LEU VAL ALA ALA ASP VAL TYR ARG PRO SEQRES 12 A 299 ALA ALA TYR ASP GLN LEU LEU GLN LEU GLY ASN GLN ILE SEQRES 13 A 299 GLY VAL GLN VAL TYR GLY GLU PRO ASN ASN GLN ASN PRO SEQRES 14 A 299 ILE GLU ILE ALA LYS LYS GLY VAL ASP ILE PHE VAL LYS SEQRES 15 A 299 ASN LYS MET ASP ILE ILE ILE VAL ASP THR ALA GLY ARG SEQRES 16 A 299 HIS GLY TYR GLY GLU GLU THR LYS LEU LEU GLU GLU MET SEQRES 17 A 299 LYS GLU MET TYR ASP VAL LEU LYS PRO ASP ASP VAL ILE SEQRES 18 A 299 LEU VAL ILE ASP ALA SER ILE GLY GLN LYS ALA TYR ASP SEQRES 19 A 299 LEU ALA SER ARG PHE HIS GLN ALA SER PRO ILE GLY SER SEQRES 20 A 299 VAL ILE ILE THR LYS MET ASP GLY THR ALA LYS GLY GLY SEQRES 21 A 299 GLY ALA LEU SER ALA VAL VAL ALA THR GLY ALA THR ILE SEQRES 22 A 299 LYS PHE ILE GLY THR GLY GLU LYS ILE ASP GLU LEU GLU SEQRES 23 A 299 THR PHE ASN ALA LYS ARG PHE VAL SER ARG ILE LEU GLY SEQRES 1 B 299 HIS HIS HIS HIS HIS HIS MET LEU GLU ASN ILE ARG ASP SEQRES 2 B 299 ALA VAL ARG LYS PHE LEU THR GLY SER THR PRO TYR GLU SEQRES 3 B 299 LYS ALA VAL ASP GLU PHE ILE LYS ASP LEU GLN LYS SER SEQRES 4 B 299 LEU ILE SER SER ASP VAL ASN VAL LYS LEU VAL PHE SER SEQRES 5 B 299 LEU THR ALA LYS ILE LYS GLU ARG LEU ASN LYS GLU LYS SEQRES 6 B 299 PRO PRO SER VAL LEU GLU ARG LYS GLU TRP PHE ILE SER SEQRES 7 B 299 ILE VAL TYR ASP GLU LEU SER LYS LEU PHE GLY GLY ASP SEQRES 8 B 299 LYS GLU PRO ASN VAL ASN PRO THR LYS LEU PRO PHE ILE SEQRES 9 B 299 ILE MET LEU VAL GLY VAL GLN GLY SER GLY LYS THR THR SEQRES 10 B 299 THR ALA GLY LYS LEU ALA TYR PHE TYR LYS LYS ARG GLY SEQRES 11 B 299 TYR LYS VAL GLY LEU VAL ALA ALA ASP VAL TYR ARG PRO SEQRES 12 B 299 ALA ALA TYR ASP GLN LEU LEU GLN LEU GLY ASN GLN ILE SEQRES 13 B 299 GLY VAL GLN VAL TYR GLY GLU PRO ASN ASN GLN ASN PRO SEQRES 14 B 299 ILE GLU ILE ALA LYS LYS GLY VAL ASP ILE PHE VAL LYS SEQRES 15 B 299 ASN LYS MET ASP ILE ILE ILE VAL ASP THR ALA GLY ARG SEQRES 16 B 299 HIS GLY TYR GLY GLU GLU THR LYS LEU LEU GLU GLU MET SEQRES 17 B 299 LYS GLU MET TYR ASP VAL LEU LYS PRO ASP ASP VAL ILE SEQRES 18 B 299 LEU VAL ILE ASP ALA SER ILE GLY GLN LYS ALA TYR ASP SEQRES 19 B 299 LEU ALA SER ARG PHE HIS GLN ALA SER PRO ILE GLY SER SEQRES 20 B 299 VAL ILE ILE THR LYS MET ASP GLY THR ALA LYS GLY GLY SEQRES 21 B 299 GLY ALA LEU SER ALA VAL VAL ALA THR GLY ALA THR ILE SEQRES 22 B 299 LYS PHE ILE GLY THR GLY GLU LYS ILE ASP GLU LEU GLU SEQRES 23 B 299 THR PHE ASN ALA LYS ARG PHE VAL SER ARG ILE LEU GLY HET GDP A 301 28 HET SO4 A 302 5 HET SO4 A 303 5 HET GDP B 301 28 HET SO4 B 302 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *178(H2 O) HELIX 1 AA1 ASN A 4 THR A 14 1 11 HELIX 2 AA2 PRO A 18 SER A 37 1 20 HELIX 3 AA3 ASN A 40 ASN A 56 1 17 HELIX 4 AA4 GLU A 65 PHE A 82 1 18 HELIX 5 AA5 GLY A 108 ARG A 123 1 16 HELIX 6 AA6 ALA A 138 GLY A 151 1 14 HELIX 7 AA7 ASN A 162 ASN A 177 1 16 HELIX 8 AA8 GLY A 193 LYS A 210 1 18 HELIX 9 AA9 SER A 221 LYS A 225 5 5 HELIX 10 AB1 ALA A 226 SER A 237 1 12 HELIX 11 AB2 LYS A 252 THR A 263 1 12 HELIX 12 AB3 ASN A 283 GLY A 293 1 11 HELIX 13 AB4 GLU B 3 GLY B 15 1 13 HELIX 14 AB5 PRO B 18 SER B 37 1 20 HELIX 15 AB6 ASN B 40 ASN B 56 1 17 HELIX 16 AB7 GLU B 65 PHE B 82 1 18 HELIX 17 AB8 GLY B 108 ARG B 123 1 16 HELIX 18 AB9 ALA B 138 ILE B 150 1 13 HELIX 19 AC1 ASN B 162 ASN B 177 1 16 HELIX 20 AC2 GLY B 191 GLY B 193 5 3 HELIX 21 AC3 GLU B 194 LYS B 210 1 17 HELIX 22 AC4 SER B 221 LYS B 225 5 5 HELIX 23 AC5 ALA B 226 SER B 237 1 12 HELIX 24 AC6 LYS B 252 THR B 263 1 12 HELIX 25 AC7 ASN B 283 GLY B 293 1 11 SHEET 1 AA1 8 GLN A 153 GLY A 156 0 SHEET 2 AA1 8 VAL A 127 ALA A 132 1 N ALA A 131 O TYR A 155 SHEET 3 AA1 8 ILE A 181 THR A 186 1 O ASP A 185 N VAL A 130 SHEET 4 AA1 8 PHE A 97 VAL A 102 1 N ILE A 99 O ILE A 182 SHEET 5 AA1 8 ASP A 213 ASP A 219 1 O ASP A 213 N MET A 100 SHEET 6 AA1 8 SER A 241 THR A 245 1 O ILE A 243 N ILE A 218 SHEET 7 AA1 8 THR A 266 GLY A 271 1 O GLY A 271 N ILE A 244 SHEET 8 AA1 8 LEU A 279 THR A 281 -1 O GLU A 280 N ILE A 270 SHEET 1 AA2 8 GLN B 153 GLY B 156 0 SHEET 2 AA2 8 VAL B 127 ALA B 132 1 N ALA B 131 O TYR B 155 SHEET 3 AA2 8 ILE B 181 THR B 186 1 O ILE B 183 N VAL B 130 SHEET 4 AA2 8 PHE B 97 VAL B 102 1 N ILE B 99 O ILE B 182 SHEET 5 AA2 8 ASP B 213 ASP B 219 1 O ILE B 215 N MET B 100 SHEET 6 AA2 8 SER B 241 THR B 245 1 O ILE B 243 N ILE B 218 SHEET 7 AA2 8 THR B 266 GLY B 271 1 O GLY B 271 N ILE B 244 SHEET 8 AA2 8 LEU B 279 THR B 281 -1 O GLU B 280 N ILE B 270 CISPEP 1 LEU A 95 PRO A 96 0 -0.09 CISPEP 2 LEU B 95 PRO B 96 0 0.14 SITE 1 AC1 19 GLY A 106 SER A 107 GLY A 108 LYS A 109 SITE 2 AC1 19 THR A 110 THR A 111 LYS A 115 ARG A 136 SITE 3 AC1 19 GLN A 142 LYS A 246 ASP A 248 GLY A 271 SITE 4 AC1 19 THR A 272 GLY A 273 GLU A 274 HOH A 402 SITE 5 AC1 19 HOH A 415 HOH A 430 HOH A 443 SITE 1 AC2 5 GLY A 193 GLU A 195 THR A 196 ARG A 232 SITE 2 AC2 5 HOH A 450 SITE 1 AC3 2 GLU A 65 ARG A 66 SITE 1 AC4 16 GLY B 106 SER B 107 GLY B 108 LYS B 109 SITE 2 AC4 16 THR B 110 THR B 111 LYS B 115 ARG B 136 SITE 3 AC4 16 GLN B 142 LYS B 246 ASP B 248 GLY B 271 SITE 4 AC4 16 THR B 272 GLY B 273 GLU B 274 HOH B 428 SITE 1 AC5 4 LYS A 42 ASN B 40 LYS B 42 HOH B 432 CRYST1 92.168 92.168 148.240 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010850 0.006264 0.000000 0.00000 SCALE2 0.000000 0.012528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006746 0.00000