HEADER OXIDOREDUCTASE 24-MAY-16 5L3Z TITLE POLYKETIDE KETOREDUCTASE SIMC7 - BINARY COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE KETOREDUCTASE SIMC7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYKETIDE KETOREDUCTASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: A TWENTY RESIDUE NICKEL AFFINITY TAG WITH SEQUENCE COMPND 7 MGSSHHHHHHSSGLVPRGSH WAS APPENDED TO THE N-TERMINUS OF THE NATIVE COMPND 8 AMINO ACID SEQUENCE BEING DERIVED FROM THE PET-15B VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS; SOURCE 3 ORGANISM_TAXID: 1890; SOURCE 4 GENE: SIMC7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-NB-C7 KEYWDS SHORT-CHAIN DEHYDROGENASE/REDUCTASE, KETOREDUCTASE, SIMOCYCLINONE, KEYWDS 2 DNA GYRASE INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHAFER,C.E.M.STEVENSON,B.WILKINSON,D.M.LAWSON,M.J.BUTTNER REVDAT 2 30-AUG-17 5L3Z 1 REMARK REVDAT 1 05-OCT-16 5L3Z 0 JRNL AUTH M.SCHAFER,C.E.STEVENSON,B.WILKINSON,D.M.LAWSON,M.J.BUTTNER JRNL TITL SUBSTRATE-ASSISTED CATALYSIS IN POLYKETIDE REDUCTION JRNL TITL 2 PROCEEDS VIA A PHENOLATE INTERMEDIATE. JRNL REF CELL CHEM BIOL V. 23 1091 2016 JRNL REFN ESSN 2451-9456 JRNL PMID 27617849 JRNL DOI 10.1016/J.CHEMBIOL.2016.07.018 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2161 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2064 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2969 ; 1.397 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4719 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;29.040 ;21.975 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;13.294 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.556 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2561 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 1.734 ; 2.550 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1130 ; 1.734 ; 2.549 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 2.501 ; 3.815 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7785 -0.5596 4.7272 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1322 REMARK 3 T33: 0.0488 T12: 0.0760 REMARK 3 T13: -0.0555 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 9.6363 L22: 7.6441 REMARK 3 L33: 6.1380 L12: -1.6333 REMARK 3 L13: 0.5199 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.1883 S12: 0.6933 S13: -0.0199 REMARK 3 S21: -0.3686 S22: -0.2861 S23: 0.2810 REMARK 3 S31: -0.0376 S32: -0.3687 S33: 0.0977 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9450 9.2962 8.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.0862 REMARK 3 T33: 0.1548 T12: 0.0191 REMARK 3 T13: 0.0770 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 4.7148 L22: 3.3843 REMARK 3 L33: 5.2632 L12: -0.7178 REMARK 3 L13: 1.3583 L23: 0.5827 REMARK 3 S TENSOR REMARK 3 S11: 0.2084 S12: 0.5557 S13: 0.3909 REMARK 3 S21: -0.4502 S22: -0.1454 S23: -0.3535 REMARK 3 S31: -0.4730 S32: 0.4095 S33: -0.0631 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3232 -5.6252 20.0191 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0920 REMARK 3 T33: 0.0432 T12: -0.0113 REMARK 3 T13: 0.0048 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 2.6149 L22: 4.1647 REMARK 3 L33: 2.3752 L12: -2.0767 REMARK 3 L13: 0.0806 L23: -0.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: -0.1025 S13: 0.0937 REMARK 3 S21: -0.0043 S22: -0.1657 S23: -0.3493 REMARK 3 S31: 0.0487 S32: 0.3690 S33: 0.0644 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 54.4946 -7.2863 20.7916 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.1441 REMARK 3 T33: 0.0859 T12: -0.0202 REMARK 3 T13: -0.0260 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.7192 L22: 3.6535 REMARK 3 L33: 3.1136 L12: -0.2194 REMARK 3 L13: -0.6503 L23: 0.8912 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.0751 S13: 0.1910 REMARK 3 S21: 0.1098 S22: 0.0878 S23: -0.4457 REMARK 3 S31: -0.1372 S32: 0.5913 S33: -0.1386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5L3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0052 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22650 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.90 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 24.70 REMARK 200 R MERGE FOR SHELL (I) : 1.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.11500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.50000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.11500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.50000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.50000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.50000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 281 REMARK 465 GLN A 282 REMARK 465 SER A 283 REMARK 465 ILE A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ARG A 58 CD NE CZ NH1 NH2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 213 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 83.58 -151.61 REMARK 500 PRO A 53 5.74 -65.58 REMARK 500 SER A 94 -141.56 -106.53 REMARK 500 GLU A 132 -148.33 -83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 500 DBREF 5L3Z A 1 284 UNP G9VYV4 G9VYV4_STRAT 1 284 SEQADV 5L3Z MET A -19 UNP G9VYV4 INITIATING METHIONINE SEQADV 5L3Z GLY A -18 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z SER A -17 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z SER A -16 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -15 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -14 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -13 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -12 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -11 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A -10 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z SER A -9 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z SER A -8 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z GLY A -7 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z LEU A -6 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z VAL A -5 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z PRO A -4 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z ARG A -3 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z GLY A -2 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z SER A -1 UNP G9VYV4 EXPRESSION TAG SEQADV 5L3Z HIS A 0 UNP G9VYV4 EXPRESSION TAG SEQRES 1 A 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 304 LEU VAL PRO ARG GLY SER HIS MET LYS ILE LEU VAL THR SEQRES 3 A 304 GLY ALA ARG GLY SER ILE GLY SER ARG VAL ALA GLY LYS SEQRES 4 A 304 LEU VAL GLU ARG GLY LEU PRO VAL ARG GLY GLY VAL ARG SEQRES 5 A 304 ASP LEU ALA ALA PRO GLY LEU PRO GLU GLY VAL GLU ALA SEQRES 6 A 304 VAL GLN ALA ASP LEU THR ARG PRO GLU THR LEU ALA ARG SEQRES 7 A 304 ALA LEU GLU GLY VAL ASP LYS VAL PHE LEU TYR THR VAL SEQRES 8 A 304 PRO GLU GLY ILE ALA GLY PHE VAL ASP GLU ALA ARG ALA SEQRES 9 A 304 ALA GLY VAL ARG HIS VAL VAL LEU LEU SER SER ILE ALA SEQRES 10 A 304 VAL THR TRP PRO ASP ALA ASP ARG ASP PRO ILE GLY ARG SEQRES 11 A 304 MET HIS LEU ALA VAL GLU ARG PRO ILE GLU GLU SER GLY SEQRES 12 A 304 LEU GLY TRP THR PHE VAL ARG PRO GLU ALA LEU ALA THR SEQRES 13 A 304 ASN ALA LEU GLY TRP ALA PRO GLU ILE ARG GLY GLY ASP SEQRES 14 A 304 MET VAL ARG CYS ALA TYR PRO GLY ALA TYR THR THR PRO SEQRES 15 A 304 VAL HIS GLU GLU ASP ILE ALA ASP VAL VAL VAL ALA ALA SEQRES 16 A 304 LEU THR THR PRO GLY HIS ARG SER ALA ALA TYR ALA LEU SEQRES 17 A 304 THR GLY PRO GLU THR LEU THR GLN ALA GLU GLN VAL ALA SEQRES 18 A 304 LEU ILE GLY GLU ALA LEU GLY ARG ALA VAL ARG CYS GLU SEQRES 19 A 304 ARG MET PRO GLU GLN GLU ALA ARG ALA VAL LEU GLU GLY SEQRES 20 A 304 LEU TYR PRO ALA GLU VAL VAL ASP ALA ILE LEU ALA GLY SEQRES 21 A 304 GLN ALA ALA ARG ASP GLY ARG PRO ALA GLU VAL LEU ASP SEQRES 22 A 304 THR ILE ARG ALA VAL THR GLY ARG PRO ALA ARG THR PHE SEQRES 23 A 304 ARG GLU TRP ALA GLY ASP HIS VAL ALA ALA PHE ARG PRO SEQRES 24 A 304 ALA ALA GLN SER ILE HET NAP A 500 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 GLY A 10 ARG A 23 1 14 HELIX 2 AA2 GLU A 54 LEU A 60 1 7 HELIX 3 AA3 VAL A 71 GLU A 73 5 3 HELIX 4 AA4 GLY A 74 GLY A 86 1 13 HELIX 5 AA5 SER A 95 TRP A 100 5 6 HELIX 6 AA6 ASP A 106 SER A 122 1 17 HELIX 7 AA7 LEU A 134 GLY A 140 5 7 HELIX 8 AA8 TRP A 141 GLY A 148 1 8 HELIX 9 AA9 HIS A 164 THR A 178 1 15 HELIX 10 AB1 GLN A 196 GLY A 208 1 13 HELIX 11 AB2 PRO A 217 GLY A 227 1 11 HELIX 12 AB3 PRO A 230 ARG A 244 1 15 HELIX 13 AB4 ASP A 253 GLY A 260 1 8 HELIX 14 AB5 THR A 265 HIS A 273 1 9 HELIX 15 AB6 VAL A 274 ARG A 278 5 5 SHEET 1 AA1 7 GLU A 44 GLN A 47 0 SHEET 2 AA1 7 VAL A 27 VAL A 31 1 N VAL A 27 O GLU A 44 SHEET 3 AA1 7 LYS A 2 VAL A 5 1 N VAL A 5 O GLY A 30 SHEET 4 AA1 7 VAL A 63 TYR A 69 1 O PHE A 67 N LEU A 4 SHEET 5 AA1 7 HIS A 89 LEU A 93 1 O VAL A 91 N VAL A 66 SHEET 6 AA1 7 GLY A 125 PRO A 131 1 O VAL A 129 N LEU A 92 SHEET 7 AA1 7 ALA A 184 LEU A 188 1 O TYR A 186 N ARG A 130 SHEET 1 AA2 2 MET A 150 CYS A 153 0 SHEET 2 AA2 2 ARG A 212 ARG A 215 1 O ARG A 212 N VAL A 151 SHEET 1 AA3 2 TYR A 159 THR A 160 0 SHEET 2 AA3 2 LEU A 194 THR A 195 -1 O LEU A 194 N THR A 160 SSBOND 1 CYS A 153 CYS A 213 1555 1555 2.08 SITE 1 AC1 28 GLY A 7 ARG A 9 GLY A 10 SER A 11 SITE 2 AC1 28 ILE A 12 ARG A 32 ASP A 33 ALA A 48 SITE 3 AC1 28 ASP A 49 LEU A 50 THR A 51 TYR A 69 SITE 4 AC1 28 LEU A 93 SER A 94 SER A 95 HIS A 112 SITE 5 AC1 28 PRO A 131 GLU A 132 ALA A 133 LEU A 134 SITE 6 AC1 28 ASN A 137 HOH A 606 HOH A 618 HOH A 619 SITE 7 AC1 28 HOH A 621 HOH A 623 HOH A 633 HOH A 652 CRYST1 52.230 52.230 214.000 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004673 0.00000