HEADER OXIDOREDUCTASE 28-MAY-16 5L58 TITLE CRYSTAL STRUCTURE OF ISO-CITRATE DEHYDROGENASE 1 [IDH1 (R132H)] IN TITLE 2 COMPLEX WITH A NOVEL INHIBITOR (COMPOUND 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IDH,CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE,IDP,NADP(+)- COMPND 5 SPECIFIC ICDH,OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ISO-CITRATE DEHYDROGENASE, ALLOSTERIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LEVY REVDAT 3 09-OCT-19 5L58 1 JRNL REVDAT 2 11-JAN-17 5L58 1 JRNL REVDAT 1 14-DEC-16 5L58 0 JRNL AUTH S.JONES,J.AHMET,K.AYTON,M.BALL,M.COCKERILL,E.FAIRWEATHER, JRNL AUTH 2 N.HAMILTON,P.HARPER,J.HITCHIN,A.JORDAN,C.LEVY,R.LOPEZ, JRNL AUTH 3 E.MCKENZIE,M.PACKER,D.PLANT,I.SIMPSON,P.SIMPSON,I.SINCLAIR, JRNL AUTH 4 T.C.SOMERVAILLE,H.SMALL,G.J.SPENCER,G.THOMSON,M.TONGE, JRNL AUTH 5 I.WADDELL,J.WALSH,B.WASZKOWYCZ,M.WIGGLESWORTH,D.H.WISEMAN, JRNL AUTH 6 D.OGILVIE JRNL TITL DISCOVERY AND OPTIMIZATION OF ALLOSTERIC INHIBITORS OF JRNL TITL 2 MUTANT ISOCITRATE DEHYDROGENASE 1 (R132H IDH1) DISPLAYING JRNL TITL 3 ACTIVITY IN HUMAN ACUTE MYELOID LEUKEMIA CELLS. JRNL REF J.MED.CHEM. V. 59 11120 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 28002956 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01320 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.9908 - 4.8255 0.99 2428 138 0.2273 0.2720 REMARK 3 2 4.8255 - 3.8302 0.99 2295 113 0.2050 0.2136 REMARK 3 3 3.8302 - 3.3461 0.99 2260 113 0.2273 0.2794 REMARK 3 4 3.3461 - 3.0401 0.99 2200 133 0.2931 0.3093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3066 REMARK 3 ANGLE : 0.418 4145 REMARK 3 CHIRALITY : 0.040 459 REMARK 3 PLANARITY : 0.003 518 REMARK 3 DIHEDRAL : 11.411 1815 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6666 45.4232 187.2527 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.2888 REMARK 3 T33: 0.3399 T12: -0.0834 REMARK 3 T13: 0.0251 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.7076 L22: 0.9104 REMARK 3 L33: 2.4987 L12: -0.0970 REMARK 3 L13: 0.4139 L23: -0.4131 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.1373 S13: 0.1153 REMARK 3 S21: 0.0553 S22: 0.1592 S23: -0.0687 REMARK 3 S31: -0.4912 S32: 0.0680 S33: -0.1287 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9915 30.4451 186.9571 REMARK 3 T TENSOR REMARK 3 T11: 0.3450 T22: 0.4422 REMARK 3 T33: 0.3392 T12: 0.0839 REMARK 3 T13: -0.0281 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.8923 L22: 0.4863 REMARK 3 L33: 1.1127 L12: -0.6080 REMARK 3 L13: -0.8475 L23: 0.3866 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.1360 S13: 0.2384 REMARK 3 S21: -0.2077 S22: 0.0250 S23: 0.0514 REMARK 3 S31: 0.2031 S32: 0.3973 S33: 0.0188 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2558 22.4020 194.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.5883 REMARK 3 T33: 0.4349 T12: 0.1263 REMARK 3 T13: 0.0087 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.7707 L22: 1.9537 REMARK 3 L33: 1.1163 L12: 0.0529 REMARK 3 L13: 0.0296 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: -0.1772 S12: 0.1226 S13: -0.1805 REMARK 3 S21: -0.0070 S22: 0.0778 S23: -0.3496 REMARK 3 S31: 0.3118 S32: 0.6167 S33: 0.1406 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5851 30.2741 187.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.2677 REMARK 3 T33: 0.2720 T12: 0.0514 REMARK 3 T13: 0.0393 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.4550 L22: 1.0716 REMARK 3 L33: 1.1124 L12: 0.5810 REMARK 3 L13: -0.3912 L23: -0.5270 REMARK 3 S TENSOR REMARK 3 S11: -0.1200 S12: 0.2336 S13: 0.0232 REMARK 3 S21: -0.2637 S22: 0.1329 S23: 0.0675 REMARK 3 S31: 0.3019 S32: -0.0576 S33: -0.0501 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9699 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 66.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.19970 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.01 REMARK 200 R MERGE FOR SHELL (I) : 0.90980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200NL OF PROTEIN WITH 200NL OF A REMARK 280 RESERVOIR SOLUTION OF 0.06M DIVALENTS, 0.1M TRIS / BICINE PH 8.5, REMARK 280 50% (40% V/V PEG 500 MME, 20% W/V PEG 20K) [MORPHEUS E9], VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.91450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.08300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.08300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.87175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.08300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.08300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.95725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.08300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.08300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.87175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.08300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.08300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.95725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.91450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 359.65800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 137 REMARK 465 GLN A 138 REMARK 465 TYR A 139 REMARK 465 ARG A 140 REMARK 465 GLY A 150 REMARK 465 LYS A 151 REMARK 465 VAL A 152 REMARK 465 TYR A 156 REMARK 465 THR A 157 REMARK 465 PRO A 158 REMARK 465 SER A 159 REMARK 465 ASP A 160 REMARK 465 GLY A 161 REMARK 465 THR A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 VAL A 165 REMARK 465 HIS A 170 REMARK 465 ASN A 171 REMARK 465 PHE A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 GLY A 175 REMARK 465 ASN A 213 REMARK 465 THR A 214 REMARK 465 ILE A 215 REMARK 465 LEU A 216 REMARK 465 LYS A 217 REMARK 465 ASP A 273 REMARK 465 GLY A 274 REMARK 465 ASP A 275 REMARK 465 VAL A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 167 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 TYR A 219 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 272 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 281 CG1 CG2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -132.53 67.06 REMARK 500 ASP A 79 -159.54 -117.35 REMARK 500 TYR A 135 -101.39 -87.49 REMARK 500 THR A 211 -157.41 -131.50 REMARK 500 LYS A 270 -96.50 -90.97 REMARK 500 ASN A 271 -170.04 61.71 REMARK 500 ALA A 282 -155.33 -148.09 REMARK 500 GLN A 283 -89.33 -151.67 REMARK 500 VAL A 312 76.86 54.92 REMARK 500 ILE A 380 -70.13 -87.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MX A 502 DBREF 5L58 A 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 5L58 ALA A 80 UNP O75874 GLU 80 ENGINEERED MUTATION SEQADV 5L58 ALA A 81 UNP O75874 LYS 81 ENGINEERED MUTATION SEQADV 5L58 HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 5L58 ALA A 240 UNP O75874 GLU 240 ENGINEERED MUTATION SEQADV 5L58 ALA A 242 UNP O75874 GLN 242 ENGINEERED MUTATION SEQADV 5L58 ALA A 243 UNP O75874 LYS 243 ENGINEERED MUTATION SEQRES 1 A 414 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 414 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 414 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 414 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 414 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 414 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 414 ASP ALA ALA ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 414 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 414 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 414 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 414 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 414 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 414 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 414 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 414 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 414 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 414 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 414 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 414 TYR LYS SER GLN PHE ALA ALA ALA ALA ILE TRP TYR GLU SEQRES 20 A 414 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 414 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 414 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 414 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 414 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 414 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 414 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 414 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 414 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 414 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 414 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 414 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 414 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU HET NDP A 501 48 HET 6MX A 502 36 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM 6MX 2-[(3~{R})-1-[6-CYCLOHEXYLSULFANYL-5-[[(1~{R},3~{S})-5- HETNAM 2 6MX OXIDANYL-2-ADAMANTYL]CARBAMOYL]PYRIDIN-2- HETNAM 3 6MX YL]PYRROLIDIN-3-YL]ETHANOIC ACID FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 6MX C28 H39 N3 O4 S HELIX 1 AA1 ASP A 16 LEU A 30 1 15 HELIX 2 AA2 GLY A 45 THR A 52 1 8 HELIX 3 AA3 ASP A 54 ASN A 68 1 15 HELIX 4 AA4 ASP A 79 LYS A 87 1 9 HELIX 5 AA5 SER A 94 GLY A 104 1 11 HELIX 6 AA6 GLN A 185 GLY A 204 1 20 HELIX 7 AA7 TYR A 219 TYR A 235 1 17 HELIX 8 AA8 TYR A 235 ALA A 242 1 8 HELIX 9 AA9 ILE A 251 LYS A 260 1 10 HELIX 10 AB1 SER A 287 GLY A 289 5 3 HELIX 11 AB2 VAL A 312 LYS A 321 1 10 HELIX 12 AB3 PRO A 329 ASN A 348 1 20 HELIX 13 AB4 ASN A 349 ALA A 369 1 21 HELIX 14 AB5 THR A 373 GLY A 382 1 10 HELIX 15 AB6 LEU A 383 VAL A 386 5 4 HELIX 16 AB7 GLN A 387 TYR A 391 5 5 HELIX 17 AB8 ASN A 393 ALA A 412 1 20 SHEET 1 AA110 VAL A 35 ASP A 43 0 SHEET 2 AA110 ILE A 5 GLN A 14 1 N GLY A 8 O ASP A 38 SHEET 3 AA110 VAL A 69 LYS A 72 1 O VAL A 71 N VAL A 11 SHEET 4 AA110 VAL A 303 ALA A 307 1 O ALA A 305 N GLY A 70 SHEET 5 AA110 MET A 291 VAL A 296 -1 N SER A 293 O GLU A 306 SHEET 6 AA110 THR A 106 ALA A 111 -1 N GLU A 110 O THR A 292 SHEET 7 AA110 LYS A 126 HIS A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 AA110 GLY A 263 CYS A 269 1 O TRP A 267 N GLY A 131 SHEET 9 AA110 LEU A 207 THR A 211 1 N SER A 210 O ALA A 268 SHEET 10 AA110 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 AA2 2 THR A 142 VAL A 146 0 SHEET 2 AA2 2 GLY A 177 GLY A 181 -1 O ALA A 179 N PHE A 144 LINK NH2 ARG A 314 O3X NDP A 501 1555 1555 1.30 SITE 1 AC1 17 LYS A 72 THR A 75 THR A 77 ARG A 82 SITE 2 AC1 17 ASN A 96 LEU A 288 GLY A 289 GLU A 306 SITE 3 AC1 17 HIS A 309 GLY A 310 THR A 311 VAL A 312 SITE 4 AC1 17 THR A 313 ARG A 314 HIS A 315 ASN A 328 SITE 5 AC1 17 ASP A 375 SITE 1 AC2 9 ALA A 111 ARG A 119 TRP A 124 ILE A 130 SITE 2 AC2 9 ASP A 252 VAL A 255 TRP A 267 ASN A 271 SITE 3 AC2 9 TYR A 285 CRYST1 72.166 72.166 179.829 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005561 0.00000