HEADER TRANSFERASE 29-MAY-16 5L6D TITLE CRYSTAL STRUCTURE OF THE HUMAN METTL3-METTL14 COMPLEX BOUND TO SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: N6-ADENOSINE-METHYLTRANSFERASE 70 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 354-580; COMPND 5 SYNONYM: MT-A70,METHYLTRANSFERASE-LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.62; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: N6-ADENOSINE-METHYLTRANSFERASE SUBUNIT METTL14; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 107-395; COMPND 12 SYNONYM: METHYLTRANSFERASE-LIKE PROTEIN 14; COMPND 13 EC: 2.1.1.62; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL3, MTA70; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: METTL14, KIAA1627; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS RNA METHYLTRANSFERASE N6-ADENINE METHYLATION ROSSMANN FOLD, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SLEDZ,M.JINEK REVDAT 1 12-OCT-16 5L6D 0 JRNL AUTH P.SLEDZ,M.JINEK JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR MECHANISM OF THE JRNL TITL 2 M(6)A WRITER COMPLEX. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27627798 JRNL DOI 10.7554/ELIFE.18434 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6523 - 5.7522 1.00 2756 137 0.2015 0.2664 REMARK 3 2 5.7522 - 4.5667 1.00 2763 147 0.1432 0.1554 REMARK 3 3 4.5667 - 3.9898 1.00 2777 148 0.1246 0.1191 REMARK 3 4 3.9898 - 3.6251 1.00 2805 145 0.1348 0.1544 REMARK 3 5 3.6251 - 3.3653 1.00 2743 142 0.1412 0.1826 REMARK 3 6 3.3653 - 3.1669 1.00 2771 141 0.1426 0.1627 REMARK 3 7 3.1669 - 3.0084 1.00 2787 147 0.1437 0.1999 REMARK 3 8 3.0084 - 2.8774 1.00 2775 146 0.1569 0.1615 REMARK 3 9 2.8774 - 2.7667 1.00 2739 142 0.1529 0.2361 REMARK 3 10 2.7667 - 2.6712 1.00 2794 142 0.1584 0.2272 REMARK 3 11 2.6712 - 2.5877 1.00 2790 142 0.1502 0.2060 REMARK 3 12 2.5877 - 2.5137 1.00 2785 145 0.1474 0.1831 REMARK 3 13 2.5137 - 2.4475 1.00 2712 148 0.1514 0.1937 REMARK 3 14 2.4475 - 2.3878 1.00 2794 150 0.1512 0.1918 REMARK 3 15 2.3878 - 2.3335 1.00 2803 146 0.1587 0.1748 REMARK 3 16 2.3335 - 2.2839 1.00 2727 146 0.1519 0.2117 REMARK 3 17 2.2839 - 2.2382 1.00 2812 145 0.1682 0.2544 REMARK 3 18 2.2382 - 2.1960 1.00 2722 146 0.1654 0.2244 REMARK 3 19 2.1960 - 2.1567 1.00 2791 145 0.1702 0.1927 REMARK 3 20 2.1567 - 2.1202 1.00 2738 144 0.1632 0.2175 REMARK 3 21 2.1202 - 2.0860 1.00 2794 149 0.1681 0.2168 REMARK 3 22 2.0860 - 2.0539 1.00 2734 138 0.1822 0.2207 REMARK 3 23 2.0539 - 2.0237 1.00 2846 144 0.1786 0.1944 REMARK 3 24 2.0237 - 1.9952 1.00 2712 140 0.1787 0.2375 REMARK 3 25 1.9952 - 1.9682 1.00 2824 150 0.1841 0.2299 REMARK 3 26 1.9682 - 1.9427 1.00 2700 136 0.1914 0.2397 REMARK 3 27 1.9427 - 1.9184 1.00 2789 146 0.2132 0.2431 REMARK 3 28 1.9184 - 1.8953 1.00 2810 145 0.2099 0.2663 REMARK 3 29 1.8953 - 1.8732 1.00 2681 138 0.2120 0.2125 REMARK 3 30 1.8732 - 1.8522 0.97 2788 150 0.2325 0.2724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3693 REMARK 3 ANGLE : 1.112 5010 REMARK 3 CHIRALITY : 0.060 539 REMARK 3 PLANARITY : 0.008 643 REMARK 3 DIHEDRAL : 15.797 2199 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 34.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 300 MM MG ACETATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.41733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.20867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.20867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 150.41733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 354 REMARK 465 LEU A 355 REMARK 465 THR A 356 REMARK 465 GLN A 357 REMARK 465 SER A 358 REMARK 465 VAL A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 ASP A 362 REMARK 465 SER A 363 REMARK 465 SER A 364 REMARK 465 ALA A 365 REMARK 465 ASP A 366 REMARK 465 ARG A 367 REMARK 465 HIS A 401 REMARK 465 MET A 402 REMARK 465 GLU A 403 REMARK 465 LEU A 404 REMARK 465 ARG A 468 REMARK 465 THR A 469 REMARK 465 GLY A 470 REMARK 465 ARG A 471 REMARK 465 THR A 472 REMARK 465 GLY A 473 REMARK 465 PRO A 577 REMARK 465 LYS A 578 REMARK 465 ASN A 579 REMARK 465 LEU A 580 REMARK 465 LEU B 107 REMARK 465 LYS B 108 REMARK 465 GLY B 109 REMARK 465 THR B 110 REMARK 465 GLN B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 ASN B 114 REMARK 465 PRO B 115 REMARK 465 HIS B 116 REMARK 465 VAL B 137 REMARK 465 GLY B 138 REMARK 465 LEU B 139 REMARK 465 ALA B 140 REMARK 465 ASP B 141 REMARK 465 ARG B 142 REMARK 465 PHE B 143 REMARK 465 GLU B 144 REMARK 465 GLU B 145 REMARK 465 TYR B 146 REMARK 465 PRO B 147 REMARK 465 LYS B 148 REMARK 465 LEU B 149 REMARK 465 ARG B 150 REMARK 465 GLU B 151 REMARK 465 LEU B 152 REMARK 465 GLU B 201 REMARK 465 THR B 202 REMARK 465 GLY B 203 REMARK 465 ILE B 204 REMARK 465 THR B 205 REMARK 465 ALA B 206 REMARK 465 ASN B 207 REMARK 465 GLU B 208 REMARK 465 LYS B 271 REMARK 465 THR B 272 REMARK 465 LYS B 273 REMARK 465 THR B 274 REMARK 465 VAL B 296 REMARK 465 LYS B 297 REMARK 465 ARG B 298 REMARK 465 SER B 299 REMARK 465 THR B 300 REMARK 465 ASP B 301 REMARK 465 GLY B 302 REMARK 465 ASP B 303 REMARK 465 PHE B 304 REMARK 465 ILE B 305 REMARK 465 HIS B 306 REMARK 465 ALA B 307 REMARK 465 ASN B 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 474 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 267 O HOH B 505 1.45 REMARK 500 O HOH A 830 O HOH A 838 1.82 REMARK 500 O HOH A 701 O HOH A 731 1.84 REMARK 500 O HOH A 865 O HOH A 886 1.89 REMARK 500 OE1 GLU A 506 O HOH A 701 1.95 REMARK 500 N ILE B 153 O HOH B 501 2.01 REMARK 500 O HOH B 575 O HOH B 647 2.04 REMARK 500 O HOH A 854 O HOH A 887 2.07 REMARK 500 OE1 GLU B 196 O HOH B 502 2.10 REMARK 500 OD2 ASP A 424 O HOH A 702 2.12 REMARK 500 O GLU B 393 O HOH B 503 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 717 O HOH A 847 5445 1.95 REMARK 500 O HOH A 863 O HOH B 596 4545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 368 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 508 -141.73 -121.92 REMARK 500 ASN A 543 -2.60 76.24 REMARK 500 GLU B 220 59.68 -98.98 REMARK 500 ASN B 268 64.01 -152.51 REMARK 500 ASP B 312 34.53 -85.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 825 O REMARK 620 2 HOH A 853 O 99.8 REMARK 620 3 HOH A 705 O 82.5 82.2 REMARK 620 4 ASP A 552 OD2 22.3 81.9 66.8 REMARK 620 5 HOH A 736 O 166.2 88.5 87.7 153.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 DBREF 5L6D A 354 580 UNP Q86U44 MTA70_HUMAN 354 580 DBREF 5L6D B 107 395 UNP Q9HCE5 MET14_HUMAN 107 395 SEQRES 1 A 227 ALA LEU THR GLN SER VAL GLY GLY ASP SER SER ALA ASP SEQRES 2 A 227 ARG LEU PHE PRO PRO GLN TRP ILE CYS CYS ASP ILE ARG SEQRES 3 A 227 TYR LEU ASP VAL SER ILE LEU GLY LYS PHE ALA VAL VAL SEQRES 4 A 227 MET ALA ASP PRO PRO TRP ASP ILE HIS MET GLU LEU PRO SEQRES 5 A 227 TYR GLY THR LEU THR ASP ASP GLU MET ARG ARG LEU ASN SEQRES 6 A 227 ILE PRO VAL LEU GLN ASP ASP GLY PHE LEU PHE LEU TRP SEQRES 7 A 227 VAL THR GLY ARG ALA MET GLU LEU GLY ARG GLU CYS LEU SEQRES 8 A 227 ASN LEU TRP GLY TYR GLU ARG VAL ASP GLU ILE ILE TRP SEQRES 9 A 227 VAL LYS THR ASN GLN LEU GLN ARG ILE ILE ARG THR GLY SEQRES 10 A 227 ARG THR GLY HIS TRP LEU ASN HIS GLY LYS GLU HIS CYS SEQRES 11 A 227 LEU VAL GLY VAL LYS GLY ASN PRO GLN GLY PHE ASN GLN SEQRES 12 A 227 GLY LEU ASP CYS ASP VAL ILE VAL ALA GLU VAL ARG SER SEQRES 13 A 227 THR SER HIS LYS PRO ASP GLU ILE TYR GLY MET ILE GLU SEQRES 14 A 227 ARG LEU SER PRO GLY THR ARG LYS ILE GLU LEU PHE GLY SEQRES 15 A 227 ARG PRO HIS ASN VAL GLN PRO ASN TRP ILE THR LEU GLY SEQRES 16 A 227 ASN GLN LEU ASP GLY ILE HIS LEU LEU ASP PRO ASP VAL SEQRES 17 A 227 VAL ALA ARG PHE LYS GLN ARG TYR PRO ASP GLY ILE ILE SEQRES 18 A 227 SER LYS PRO LYS ASN LEU SEQRES 1 B 289 LEU LYS GLY THR GLN SER LEU ASN PRO HIS ASN ASP TYR SEQRES 2 B 289 CYS GLN HIS PHE VAL ASP THR GLY HIS ARG PRO GLN ASN SEQRES 3 B 289 PHE ILE ARG ASP VAL GLY LEU ALA ASP ARG PHE GLU GLU SEQRES 4 B 289 TYR PRO LYS LEU ARG GLU LEU ILE ARG LEU LYS ASP GLU SEQRES 5 B 289 LEU ILE ALA LYS SER ASN THR PRO PRO MET TYR LEU GLN SEQRES 6 B 289 ALA ASP ILE GLU ALA PHE ASP ILE ARG GLU LEU THR PRO SEQRES 7 B 289 LYS PHE ASP VAL ILE LEU LEU GLU PRO PRO LEU GLU GLU SEQRES 8 B 289 TYR TYR ARG GLU THR GLY ILE THR ALA ASN GLU LYS CYS SEQRES 9 B 289 TRP THR TRP ASP ASP ILE MET LYS LEU GLU ILE ASP GLU SEQRES 10 B 289 ILE ALA ALA PRO ARG SER PHE ILE PHE LEU TRP CYS GLY SEQRES 11 B 289 SER GLY GLU GLY LEU ASP LEU GLY ARG VAL CYS LEU ARG SEQRES 12 B 289 LYS TRP GLY TYR ARG ARG CYS GLU ASP ILE CYS TRP ILE SEQRES 13 B 289 LYS THR ASN LYS ASN ASN PRO GLY LYS THR LYS THR LEU SEQRES 14 B 289 ASP PRO LYS ALA VAL PHE GLN ARG THR LYS GLU HIS CYS SEQRES 15 B 289 LEU MET GLY ILE LYS GLY THR VAL LYS ARG SER THR ASP SEQRES 16 B 289 GLY ASP PHE ILE HIS ALA ASN VAL ASP ILE ASP LEU ILE SEQRES 17 B 289 ILE THR GLU GLU PRO GLU ILE GLY ASN ILE GLU LYS PRO SEQRES 18 B 289 VAL GLU ILE PHE HIS ILE ILE GLU HIS PHE CYS LEU GLY SEQRES 19 B 289 ARG ARG ARG LEU HIS LEU PHE GLY ARG ASP SER THR ILE SEQRES 20 B 289 ARG PRO GLY TRP LEU THR VAL GLY PRO THR LEU THR ASN SEQRES 21 B 289 SER ASN TYR ASN ALA GLU THR TYR ALA SER TYR PHE SER SEQRES 22 B 289 ALA PRO ASN SER TYR LEU THR GLY CYS THR GLU GLU ILE SEQRES 23 B 289 GLU ARG LEU HET SAH A 601 45 HET MG A 602 1 HET ACT B 401 7 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 MG MG 2+ FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *399(H2 O) HELIX 1 AA1 ASP A 382 GLY A 387 5 6 HELIX 2 AA2 THR A 410 LEU A 417 1 8 HELIX 3 AA3 ASN A 418 GLN A 423 5 6 HELIX 4 AA4 ARG A 435 TRP A 447 1 13 HELIX 5 AA5 ASP A 515 SER A 525 1 11 HELIX 6 AA6 ARG A 536 VAL A 540 5 5 HELIX 7 AA7 ASP A 558 TYR A 569 1 12 HELIX 8 AA8 ASP B 118 GLY B 127 1 10 HELIX 9 AA9 ARG B 129 ILE B 134 5 6 HELIX 10 AB1 ARG B 154 ASN B 164 1 11 HELIX 11 AB2 ASP B 178 LEU B 182 5 5 HELIX 12 AB3 LEU B 195 TYR B 199 5 5 HELIX 13 AB4 THR B 212 LYS B 218 1 7 HELIX 14 AB5 LEU B 219 GLU B 223 5 5 HELIX 15 AB6 GLU B 239 TRP B 251 1 13 HELIX 16 AB7 VAL B 328 PHE B 337 1 10 HELIX 17 AB8 ARG B 349 ILE B 353 5 5 HELIX 18 AB9 ASN B 370 TYR B 377 1 8 SHEET 1 AA1 9 VAL A 502 GLU A 506 0 SHEET 2 AA1 9 GLU A 450 THR A 460 1 N VAL A 458 O ILE A 503 SHEET 3 AA1 9 LYS A 480 LYS A 488 -1 O VAL A 485 N VAL A 452 SHEET 4 AA1 9 GLY A 426 VAL A 432 -1 N LEU A 428 O GLY A 486 SHEET 5 AA1 9 VAL A 391 ALA A 394 1 N VAL A 392 O PHE A 429 SHEET 6 AA1 9 LYS A 530 LEU A 533 1 O LEU A 533 N MET A 393 SHEET 7 AA1 9 TRP A 544 GLY A 548 1 O LEU A 547 N GLU A 532 SHEET 8 AA1 9 GLN A 372 CYS A 375 1 N ILE A 374 O THR A 546 SHEET 9 AA1 9 ILE A 554 HIS A 555 -1 O HIS A 555 N TRP A 373 SHEET 1 AA2 8 MET B 168 GLN B 171 0 SHEET 2 AA2 8 LEU B 358 GLY B 361 1 O THR B 359 N LEU B 170 SHEET 3 AA2 8 ARG B 343 LEU B 346 1 N ARG B 343 O LEU B 358 SHEET 4 AA2 8 PHE B 186 LEU B 191 1 N LEU B 190 O LEU B 344 SHEET 5 AA2 8 ALA B 225 GLY B 236 1 O PHE B 232 N LEU B 191 SHEET 6 AA2 8 LYS B 285 LYS B 293 -1 O HIS B 287 N CYS B 235 SHEET 7 AA2 8 ARG B 254 THR B 264 -1 N ILE B 259 O CYS B 288 SHEET 8 AA2 8 LEU B 313 GLU B 317 1 O ILE B 314 N ILE B 262 SSBOND 1 CYS B 338 CYS B 388 1555 1555 2.03 LINK MG MG A 602 O HOH A 825 1555 1555 2.54 LINK MG MG A 602 O HOH A 853 1555 1555 2.07 LINK MG MG A 602 O HOH A 705 1555 1555 2.11 LINK OD2 ASP A 552 MG MG A 602 1555 5545 2.37 LINK MG MG A 602 O HOH A 736 1555 5445 2.25 CISPEP 1 THR B 183 PRO B 184 0 -2.57 CISPEP 2 ALA B 380 PRO B 381 0 2.03 SITE 1 AC1 22 CYS A 376 ASP A 377 ILE A 378 ASP A 395 SITE 2 AC1 22 PRO A 397 TYR A 406 GLY A 407 LEU A 409 SITE 3 AC1 22 SER A 511 HIS A 512 LYS A 513 PHE A 534 SITE 4 AC1 22 ARG A 536 HIS A 538 ASN A 539 ASN A 549 SITE 5 AC1 22 GLN A 550 HOH A 732 HOH A 772 HOH A 786 SITE 6 AC1 22 HOH A 830 HOH A 838 SITE 1 AC2 5 ASP A 552 HOH A 705 HOH A 736 HOH A 825 SITE 2 AC2 5 HOH A 853 SITE 1 AC3 6 GLU A 438 ARG B 249 ARG B 254 ARG B 255 SITE 2 AC3 6 HOH B 515 HOH B 585 CRYST1 63.822 63.822 225.626 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015669 0.009046 0.000000 0.00000 SCALE2 0.000000 0.018093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004432 0.00000