HEADER OXIDOREDUCTASE 30-MAY-16 5L6G TITLE XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1 IN TITLE 2 COMPLEX WITH XYLOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD LINKED OXIDASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FIRST 16 RESIDUES ARE A SIGNAL SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / SOURCE 3 BCRC 31852 / DSM 1799); SOURCE 4 ORGANISM_TAXID: 573729; SOURCE 5 ATCC: 42464; SOURCE 6 GENE: MYCTH_102971; SOURCE 7 EXPRESSION_SYSTEM: MYCELIOPHTHORA THERMOPHILA ATCC 42464; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 573729 KEYWDS FAD, CAZY, OLIGOSACCHARIDE, XYLOSE, XYLAN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.ROZEBOOM,A.R.FERRARI,M.W.FRAAIJE REVDAT 6 10-JAN-24 5L6G 1 HETSYN REVDAT 5 29-JUL-20 5L6G 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 29-NOV-17 5L6G 1 REMARK REVDAT 3 16-NOV-16 5L6G 1 JRNL REVDAT 2 28-SEP-16 5L6G 1 JRNL REVDAT 1 21-SEP-16 5L6G 0 JRNL AUTH A.R.FERRARI,H.J.ROZEBOOM,J.M.DOBRUCHOWSKA,S.S.VAN LEEUWEN, JRNL AUTH 2 A.S.VUGTS,M.J.KOETSIER,J.VISSER,M.W.FRAAIJE JRNL TITL DISCOVERY OF A XYLOOLIGOSACCHARIDE OXIDASE FROM JRNL TITL 2 MYCELIOPHTHORA THERMOPHILA C1. JRNL REF J.BIOL.CHEM. V. 291 23709 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27629413 JRNL DOI 10.1074/JBC.M116.741173 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 43887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 191 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4007 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3561 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5490 ; 1.394 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8169 ; 0.769 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 6.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.179 ;23.901 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;11.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4523 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 933 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 0.669 ; 0.986 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 0.669 ; 0.985 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2381 ; 1.179 ; 1.476 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2382 ; 1.179 ; 1.478 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2104 ; 1.083 ; 1.246 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2104 ; 1.083 ; 1.246 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3109 ; 1.739 ; 1.828 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5096 ; 4.928 ; 9.892 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4931 ; 4.687 ; 9.406 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 497 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8330 12.2830 48.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: 0.0864 REMARK 3 T33: 0.0116 T12: -0.0057 REMARK 3 T13: 0.0047 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9212 L22: 0.4076 REMARK 3 L33: 0.6644 L12: -0.1973 REMARK 3 L13: 0.3100 L23: -0.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0717 S13: -0.0463 REMARK 3 S21: 0.0381 S22: 0.0237 S23: 0.0365 REMARK 3 S31: 0.0088 S32: -0.0161 S33: -0.0112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : HELIOSMX MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 53.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5K8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18% PEG3350, 0.1 M MES BUFFER, 0.2 REMARK 280 M AMMONIUM CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.67650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.65000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.67650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 359 O HOH A 601 2.06 REMARK 500 O4 NAG C 2 O HOH A 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 91 -82.42 -96.77 REMARK 500 CYS A 155 93.56 106.45 REMARK 500 TYR A 336 126.14 -37.24 REMARK 500 ASP A 337 28.87 -151.78 REMARK 500 ARG A 372 41.76 -91.88 REMARK 500 PHE A 401 75.49 -110.00 REMARK 500 TYR A 451 66.62 -115.76 REMARK 500 ARG A 467 -117.49 42.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1005 DISTANCE = 6.16 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K8E RELATED DB: PDB REMARK 900 DEPOSITION CODE DBREF 5L6G A 1 497 UNP G2QG48 G2QG48_MYCTT 1 497 SEQRES 1 A 497 MET HIS LEU LEU PRO LEU THR VAL SER ALA THR ALA VAL SEQRES 2 A 497 VAL SER ALA ALA SER SER PRO HIS ALA LYS ARG ALA ALA SEQRES 3 A 497 ILE ASP GLU CYS LEU LYS ASN ALA LYS VAL PRO VAL THR SEQRES 4 A 497 ALA ARG ASN SER THR GLU TRP LYS THR ASP ALA SER PRO SEQRES 5 A 497 PHE ASN ASP ARG LEU PRO TYR THR PRO ALA ALA ILE ALA SEQRES 6 A 497 LYS PRO ALA THR VAL GLU HIS ILE GLN ALA ALA VAL LEU SEQRES 7 A 497 CYS ALA ALA GLU VAL GLY VAL LYS ALA ASN PRO LYS SER SEQRES 8 A 497 GLY GLY HIS SER TYR ALA SER PHE GLY LEU GLY GLY GLU SEQRES 9 A 497 ASP GLY HIS LEU VAL VAL GLU LEU ASP ARG MET TYR ASN SEQRES 10 A 497 VAL THR LEU ASP PRO GLU THR HIS ILE ALA THR VAL GLN SEQRES 11 A 497 PRO GLY ALA ARG LEU GLY HIS ILE ALA THR VAL LEU TYR SEQRES 12 A 497 GLU GLU GLY LYS ARG ALA PHE SER HIS GLY THR CYS PRO SEQRES 13 A 497 GLY VAL GLY VAL GLY GLY HIS SER LEU HIS GLY GLY PHE SEQRES 14 A 497 GLY PHE SER SER HIS SER HIS GLY LEU ALA VAL ASP TRP SEQRES 15 A 497 ILE THR SER ALA ASP VAL VAL LEU ALA ASN GLY SER LEU SEQRES 16 A 497 VAL THR ALA SER GLU THR GLU ASN PRO ASP LEU PHE TRP SEQRES 17 A 497 ALA LEU ARG GLY ALA GLY SER ASN PHE GLY ILE VAL ALA SEQRES 18 A 497 SER PHE ARG PHE LYS THR PHE ALA ALA PRO PRO ASN VAL SEQRES 19 A 497 THR SER TYR GLU ILE ASN LEU PRO TRP THR ASN SER SER SEQRES 20 A 497 ASN VAL VAL LYS GLY TRP GLY ALA LEU GLN GLU TRP LEU SEQRES 21 A 497 LEU ASN GLY GLY MET PRO GLU GLU MET ASN MET ARG VAL SEQRES 22 A 497 LEU GLY ASN ALA PHE GLN THR GLN LEU GLN GLY LEU TYR SEQRES 23 A 497 HIS GLY ASN ALA SER ALA LEU LYS THR ALA ILE GLN PRO SEQRES 24 A 497 LEU LEU ALA LEU LEU ASP ALA ASN LEU SER SER VAL GLN SEQRES 25 A 497 GLU HIS ASP TRP MET GLU GLY PHE ARG HIS TYR ALA TYR SEQRES 26 A 497 SER GLY GLU ILE ASP ILE THR ASP PRO GLY TYR ASP GLN SEQRES 27 A 497 SER GLU THR PHE TYR SER LYS SER LEU VAL THR SER ALA SEQRES 28 A 497 LEU PRO PRO ASP VAL LEU GLU ARG VAL ALA GLU TYR TRP SEQRES 29 A 497 ILE GLU THR ALA ASN LYS VAL ARG ARG SER TRP TYR ILE SEQRES 30 A 497 ILE ILE ASP MET TYR GLY GLY PRO ASN SER ALA VAL THR SEQRES 31 A 497 ARG VAL PRO PRO GLY ALA GLY SER TYR ALA PHE ARG ASP SEQRES 32 A 497 PRO GLU ARG HIS LEU PHE LEU TYR GLU LEU TYR ASP ARG SEQRES 33 A 497 SER PHE GLY PRO TYR PRO ASP ASP GLY PHE ALA PHE LEU SEQRES 34 A 497 ASP GLY TRP VAL HIS ALA PHE THR GLY GLY LEU ASP SER SEQRES 35 A 497 SER ASP TRP GLY MET TYR ILE ASN TYR ALA ASP PRO GLY SEQRES 36 A 497 LEU ASP ARG ALA GLU ALA GLN GLU VAL TYR TYR ARG GLN SEQRES 37 A 497 ASN LEU ASP ARG LEU ARG ARG ILE LYS GLN GLN LEU ASP SEQRES 38 A 497 PRO THR GLU LEU PHE TYR TYR PRO GLN ALA VAL GLU PRO SEQRES 39 A 497 ALA GLU VAL MODRES 5L6G NAG B 1 NAG -D MODRES 5L6G NAG B 2 NAG -D MODRES 5L6G NAG C 1 NAG -D MODRES 5L6G NAG C 2 NAG -D MODRES 5L6G NAG A 506 NAG -D MODRES 5L6G NAG A 507 NAG -D MODRES 5L6G NAG A 508 NAG -D HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET FAD A 501 53 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET XYP A 509 10 HET XYP A 510 10 HET XYP A 511 10 HET XYS A 512 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 8 XYP 3(C5 H10 O5) FORMUL 11 XYS C5 H10 O5 FORMUL 12 HOH *405(H2 O) HELIX 1 AA1 ALA A 25 ALA A 34 1 10 HELIX 2 AA2 THR A 44 SER A 51 1 8 HELIX 3 AA3 THR A 69 GLY A 84 1 16 HELIX 4 AA4 SER A 98 GLY A 102 5 5 HELIX 5 AA5 ARG A 134 LYS A 147 1 14 HELIX 6 AA6 GLY A 159 HIS A 166 1 8 HELIX 7 AA7 SER A 172 GLY A 177 1 6 HELIX 8 AA8 LEU A 178 ASP A 181 5 4 HELIX 9 AA9 ASN A 203 GLY A 214 1 12 HELIX 10 AB1 SER A 215 PHE A 217 5 3 HELIX 11 AB2 ASN A 245 ASN A 262 1 18 HELIX 12 AB3 ASN A 289 ASP A 305 1 17 HELIX 13 AB4 ASP A 315 TYR A 323 1 9 HELIX 14 AB5 PRO A 353 THR A 367 1 15 HELIX 15 AB6 ALA A 368 VAL A 371 5 4 HELIX 16 AB7 ALA A 388 VAL A 392 5 5 HELIX 17 AB8 PHE A 426 GLY A 438 1 13 HELIX 18 AB9 GLY A 439 LEU A 440 5 2 HELIX 19 AC1 ASP A 441 SER A 443 5 3 HELIX 20 AC2 TYR A 448 ALA A 452 5 5 HELIX 21 AC3 ASP A 457 ARG A 467 1 11 HELIX 22 AC4 ASN A 469 ASP A 481 1 13 SHEET 1 AA1 4 VAL A 38 THR A 39 0 SHEET 2 AA1 4 ALA A 63 ALA A 65 -1 O ILE A 64 N THR A 39 SHEET 3 AA1 4 LEU A 108 GLU A 111 1 O VAL A 109 N ALA A 63 SHEET 4 AA1 4 ALA A 87 LYS A 90 1 N ASN A 88 O VAL A 110 SHEET 1 AA2 5 VAL A 118 LEU A 120 0 SHEET 2 AA2 5 ALA A 127 VAL A 129 -1 O THR A 128 N THR A 119 SHEET 3 AA2 5 ILE A 219 PHE A 225 -1 O PHE A 225 N ALA A 127 SHEET 4 AA2 5 ILE A 183 VAL A 189 -1 N ASP A 187 O ALA A 221 SHEET 5 AA2 5 LEU A 195 SER A 199 -1 O VAL A 196 N VAL A 188 SHEET 1 AA3 2 ARG A 148 ALA A 149 0 SHEET 2 AA3 2 PHE A 228 ALA A 229 -1 O PHE A 228 N ALA A 149 SHEET 1 AA4 8 LEU A 308 HIS A 314 0 SHEET 2 AA4 8 VAL A 234 ASN A 240 -1 N VAL A 234 O HIS A 314 SHEET 3 AA4 8 THR A 280 TYR A 286 -1 O LEU A 282 N ILE A 239 SHEET 4 AA4 8 MET A 269 GLY A 275 -1 N LEU A 274 O GLN A 281 SHEET 5 AA4 8 SER A 374 MET A 381 -1 O ILE A 377 N GLY A 275 SHEET 6 AA4 8 PHE A 409 SER A 417 -1 O LEU A 410 N ASP A 380 SHEET 7 AA4 8 THR A 341 THR A 349 -1 N LYS A 345 O LEU A 413 SHEET 8 AA4 8 TRP A 445 GLY A 446 -1 O GLY A 446 N VAL A 348 SSBOND 1 CYS A 30 CYS A 79 1555 1555 2.09 LINK ND1 HIS A 94 C8M FAD A 501 1555 1555 1.38 LINK ND2 ASN A 117 C1 NAG B 1 1555 1555 1.43 LINK SG CYS A 155 C6 FAD A 501 1555 1555 1.65 LINK ND2 ASN A 192 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 233 C1 NAG A 506 1555 1555 1.46 LINK ND2 ASN A 245 C1 NAG A 507 1555 1555 1.45 LINK ND2 ASN A 289 C1 NAG A 508 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 CRYST1 123.300 59.353 68.456 90.00 90.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008110 0.000000 0.000140 0.00000 SCALE2 0.000000 0.016848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014610 0.00000