HEADER IMMUNE SYSTEM 01-JUN-16 5L6Y TITLE IL13 IN COMPLEX WITH TRALOKINUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-13; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: IL-13; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: IL13 R&D SYSTEMS (RECOMBINANT HUMAN IL-13 CAT NO:213- COMPND 7 ILB/CF); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRALOKINUMAB FAB DIGEST VH; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRALOKIUMAB FAB DIGEST VL; COMPND 14 CHAIN: L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL13, NC30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS IL13 ANTIBODY TRALOKINUMAB ASTHMA, IL13, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.BREED REVDAT 3 25-JAN-17 5L6Y 1 JRNL REVDAT 2 28-DEC-16 5L6Y 1 JRNL REVDAT 1 21-DEC-16 5L6Y 0 JRNL AUTH B.POPOVIC,J.BREED,D.G.REES,M.J.GARDENER,L.M.VINALL,B.KEMP, JRNL AUTH 2 J.SPOONER,J.KEEN,R.MINTER,F.UDDIN,G.COLICE,T.WILKINSON, JRNL AUTH 3 T.VAUGHAN,R.D.MAY JRNL TITL STRUCTURAL CHARACTERISATION REVEALS MECHANISM OF JRNL TITL 2 IL-13-NEUTRALISING MONOCLONAL ANTIBODY TRALOKINUMAB AS JRNL TITL 3 INHIBITION OF BINDING TO IL-13R ALPHA 1 AND IL-13R ALPHA 2. JRNL REF J. MOL. BIOL. V. 429 208 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 27956146 JRNL DOI 10.1016/J.JMB.2016.12.005 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 35416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1763 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1518 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2130 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1460 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.82 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25560 REMARK 3 B22 (A**2) : -6.57420 REMARK 3 B33 (A**2) : 4.31870 REMARK 3 B12 (A**2) : -8.82660 REMARK 3 B13 (A**2) : -2.13010 REMARK 3 B23 (A**2) : -5.62100 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.158 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.134 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.146 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4104 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5592 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1284 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 606 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4104 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 557 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4669 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 6.04 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -21.8236 26.3244 -13.4211 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: -0.0571 REMARK 3 T33: 0.0290 T12: 0.0707 REMARK 3 T13: 0.0383 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.3377 L22: 0.9996 REMARK 3 L33: 1.3035 L12: -0.7499 REMARK 3 L13: -0.2515 L23: 0.6609 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0140 S13: 0.1410 REMARK 3 S21: -0.0304 S22: -0.0992 S23: -0.0976 REMARK 3 S31: -0.0528 S32: -0.1055 S33: 0.1212 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.4588 -10.9978 -1.7492 REMARK 3 T TENSOR REMARK 3 T11: -0.0237 T22: -0.0016 REMARK 3 T33: -0.0466 T12: 0.0197 REMARK 3 T13: 0.0309 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.8022 L22: 0.4419 REMARK 3 L33: 1.3919 L12: -0.3058 REMARK 3 L13: 0.9935 L23: -0.6869 REMARK 3 S TENSOR REMARK 3 S11: 0.0964 S12: 0.0157 S13: 0.0235 REMARK 3 S21: -0.0814 S22: -0.0690 S23: 0.0229 REMARK 3 S31: 0.1547 S32: -0.0130 S33: -0.0274 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.5652 0.1208 8.3157 REMARK 3 T TENSOR REMARK 3 T11: -0.0140 T22: 0.0104 REMARK 3 T33: 0.0057 T12: 0.0139 REMARK 3 T13: 0.0072 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 0.1357 REMARK 3 L33: 0.3020 L12: -0.3568 REMARK 3 L13: 0.4996 L23: -0.3282 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.1675 S13: 0.0913 REMARK 3 S21: -0.0020 S22: 0.0386 S23: -0.0450 REMARK 3 S31: -0.0164 S32: -0.0500 S33: -0.0216 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 VAL C 3 REMARK 465 PRO C 71 REMARK 465 HIS C 72 REMARK 465 LYS C 73 REMARK 465 VAL C 74 REMARK 465 SER C 75 REMARK 465 ALA C 76 REMARK 465 GLY C 77 REMARK 465 GLN C 78 REMARK 465 PHE C 79 REMARK 465 SER C 80 REMARK 465 SER C 81 REMARK 465 LEU C 82 REMARK 465 HIS C 83 REMARK 465 VAL C 84 REMARK 465 ARG C 85 REMARK 465 GLN H 1 REMARK 465 SER H 196A REMARK 465 SER H 196B REMARK 465 LEU H 196C REMARK 465 GLY H 196D REMARK 465 THR H 196E REMARK 465 SER L 1 REMARK 465 SER L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 10 NH1 NH2 REMARK 470 GLN C 23 CG CD OE1 NE2 REMARK 470 LYS C 24 NZ REMARK 470 ASN C 37 CG OD1 ND2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 ASP C 86 CG OD1 OD2 REMARK 470 LYS C 88 NZ REMARK 470 GLU C 90 CD OE1 OE2 REMARK 470 LYS C 96 NZ REMARK 470 GLN H 3 CD OE1 NE2 REMARK 470 GLU H 10 CG CD OE1 OE2 REMARK 470 LYS H 19 CE NZ REMARK 470 LYS H 23 CD CE NZ REMARK 470 SER H 74 OG REMARK 470 ARG H 83 CD NE CZ NH1 NH2 REMARK 470 LYS H 126 CE NZ REMARK 470 THR H 192 OG1 CG2 REMARK 470 GLN H 201 CG CD OE1 NE2 REMARK 470 ASN H 208 OD1 ND2 REMARK 470 LYS H 210 CG CD CE NZ REMARK 470 LYS H 215 CD CE NZ REMARK 470 LYS H 218 NZ REMARK 470 GLU H 221 CG CD OE1 OE2 REMARK 470 LYS L 17 CE NZ REMARK 470 GLU L 60 CD OE1 OE2 REMARK 470 LYS L 112 CE NZ REMARK 470 GLN L 128 CG CD OE1 NE2 REMARK 470 LYS L 131 CG CD CE NZ REMARK 470 LYS L 151 CD CE NZ REMARK 470 SER L 154 OG REMARK 470 LYS L 158 CE NZ REMARK 470 LYS L 168 CD CE NZ REMARK 470 LYS L 173 CE NZ REMARK 470 LYS L 188 CD CE NZ REMARK 470 ARG L 191 CG CD NE CZ NH1 NH2 REMARK 470 GLN L 196 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG H 100B CB ARG H 100B CG -0.226 REMARK 500 ARG H 100B CG ARG H 100B CD -0.221 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 100B CB - CG - CD ANGL. DEV. = 68.0 DEGREES REMARK 500 ARG H 100B CG - CD - NE ANGL. DEV. = -21.8 DEGREES REMARK 500 LEU H 187 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 29 19.30 57.26 REMARK 500 THR C 39 21.75 -141.65 REMARK 500 ALA C 40 143.25 86.97 REMARK 500 CYS C 56 -69.91 48.81 REMARK 500 SER C 57 -28.11 83.51 REMARK 500 ASP L 51 -54.57 80.42 REMARK 500 SER L 154 -11.56 70.22 REMARK 500 ASN L 172 -1.81 75.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 310 DBREF 5L6Y C 1 112 UNP P35225 IL13_HUMAN 35 146 DBREF 5L6Y H 1 237 PDB 5L6Y 5L6Y 1 237 DBREF 5L6Y L 1 214 PDB 5L6Y 5L6Y 1 214 SEQRES 1 C 112 GLY PRO VAL PRO PRO SER THR ALA LEU ARG GLU LEU ILE SEQRES 2 C 112 GLU GLU LEU VAL ASN ILE THR GLN ASN GLN LYS ALA PRO SEQRES 3 C 112 LEU CYS ASN GLY SER MET VAL TRP SER ILE ASN LEU THR SEQRES 4 C 112 ALA GLY MET TYR CYS ALA ALA LEU GLU SER LEU ILE ASN SEQRES 5 C 112 VAL SER GLY CYS SER ALA ILE GLU LYS THR GLN ARG MET SEQRES 6 C 112 LEU SER GLY PHE CYS PRO HIS LYS VAL SER ALA GLY GLN SEQRES 7 C 112 PHE SER SER LEU HIS VAL ARG ASP THR LYS ILE GLU VAL SEQRES 8 C 112 ALA GLN PHE VAL LYS ASP LEU LEU LEU HIS LEU LYS LYS SEQRES 9 C 112 LEU PHE ARG GLU GLY ARG PHE ASN SEQRES 1 H 238 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 238 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 238 TYR THR PHE THR ASN TYR GLY LEU SER TRP VAL ARG GLN SEQRES 4 H 238 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 238 ALA ASN ASN GLY ASP THR ASN TYR GLY GLN GLU PHE GLN SEQRES 6 H 238 GLY ARG VAL THR MET THR THR ASP THR SER THR SER THR SEQRES 7 H 238 ALA TYR MET GLU LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 238 ALA VAL TYR TYR CYS ALA ARG ASP SER SER SER SER TRP SEQRES 9 H 238 ALA ARG TRP PHE PHE ASP LEU TRP GLY ARG GLY THR LEU SEQRES 10 H 238 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 238 PHE PRO LEU ALA PRO ILE SER LYS SER THR SER GLY GLY SEQRES 12 H 238 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 238 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 238 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 238 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL GLY PRO SEQRES 16 H 238 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 238 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 238 GLU SER LYS TYR GLY PRO PRO SER PRO SER SER PRO ALA SEQRES 19 H 238 PRO ALA LYS ASN SEQRES 1 L 214 SER TYR VAL LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 L 214 PRO GLY LYS THR ALA ARG ILE THR CYS GLY GLY ASN ILE SEQRES 3 L 214 ILE GLY SER LYS LEU VAL HIS TRP TYR GLN GLN LYS PRO SEQRES 4 L 214 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASP ASP GLY ASP SEQRES 5 L 214 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 214 SER GLY ASN THR ALA THR LEU THR ILE SER ARG VAL GLU SEQRES 7 L 214 ALA GLY ASP GLU ALA ASP TYR TYR CYS GLN VAL TRP ASP SEQRES 8 L 214 THR GLY SER ASP PRO VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER HET FMT H 301 3 HET FMT H 302 3 HET FMT H 303 3 HET FMT H 304 3 HET FMT H 305 3 HET FMT L 301 3 HET FMT L 302 3 HET FMT L 303 3 HET FMT L 304 3 HET FMT L 305 3 HET FMT L 306 3 HET FMT L 307 3 HET FMT L 308 3 HET FMT L 309 3 HET FMT L 310 3 HETNAM FMT FORMIC ACID FORMUL 4 FMT 15(C H2 O2) FORMUL 19 HOH *210(H2 O) HELIX 1 AA1 SER C 6 THR C 20 1 15 HELIX 2 AA2 PRO C 26 GLY C 30 5 5 HELIX 3 AA3 MET C 42 ILE C 51 1 10 HELIX 4 AA4 ILE C 59 CYS C 70 1 12 HELIX 5 AA5 VAL C 91 GLU C 108 1 18 HELIX 6 AA6 THR H 28 THR H 30 5 3 HELIX 7 AA7 THR H 73 THR H 75 5 3 HELIX 8 AA8 ARG H 83 THR H 87 5 5 HELIX 9 AA9 SER H 165 ALA H 167 5 3 HELIX 10 AB1 LYS H 210 ASN H 213 5 4 HELIX 11 AB2 ILE L 27 LYS L 31 5 5 HELIX 12 AB3 GLU L 79 GLU L 83 5 5 HELIX 13 AB4 SER L 123 ALA L 129 1 7 HELIX 14 AB5 THR L 183 SER L 189 1 7 SHEET 1 AA1 2 MET C 32 TRP C 34 0 SHEET 2 AA1 2 LYS C 88 GLU C 90 -1 O ILE C 89 N VAL C 33 SHEET 1 AA2 4 GLN H 3 GLN H 6 0 SHEET 2 AA2 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA2 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA2 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA3 6 GLU H 10 LYS H 12 0 SHEET 2 AA3 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 6 ALA H 88 SER H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA3 6 GLU H 46 SER H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA3 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 ALA H 145 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA4 4 TYR H 185 VAL H 193 -1 O VAL H 191 N LEU H 147 SHEET 4 AA4 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA5 4 SER H 129 LEU H 133 0 SHEET 2 AA5 4 ALA H 145 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA5 4 TYR H 185 VAL H 193 -1 O VAL H 191 N LEU H 147 SHEET 4 AA5 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA6 3 THR H 160 TRP H 163 0 SHEET 2 AA6 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA6 3 THR H 214 ARG H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 AA7 5 SER L 9 VAL L 13 0 SHEET 2 AA7 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA7 5 ALA L 84 TRP L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 5 HIS L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA7 5 VAL L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 AA8 4 SER L 9 VAL L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA8 4 ALA L 84 TRP L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 VAL L 96 PHE L 98 -1 O VAL L 97 N VAL L 90 SHEET 1 AA9 3 ALA L 19 GLY L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB1 4 SER L 116 PHE L 120 0 SHEET 2 AB1 4 ALA L 132 PHE L 141 -1 O LEU L 137 N THR L 118 SHEET 3 AB1 4 TYR L 174 LEU L 182 -1 O TYR L 174 N PHE L 141 SHEET 4 AB1 4 VAL L 161 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 AB2 4 SER L 116 PHE L 120 0 SHEET 2 AB2 4 ALA L 132 PHE L 141 -1 O LEU L 137 N THR L 118 SHEET 3 AB2 4 TYR L 174 LEU L 182 -1 O TYR L 174 N PHE L 141 SHEET 4 AB2 4 SER L 167 LYS L 168 -1 N SER L 167 O ALA L 175 SHEET 1 AB3 4 SER L 155 VAL L 157 0 SHEET 2 AB3 4 THR L 147 ALA L 152 -1 N ALA L 152 O SER L 155 SHEET 3 AB3 4 TYR L 193 HIS L 199 -1 O GLN L 196 N ALA L 149 SHEET 4 AB3 4 SER L 202 VAL L 208 -1 O VAL L 204 N VAL L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.62 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.08 SSBOND 4 CYS L 136 CYS L 195 1555 1555 2.04 CISPEP 1 PHE H 155 PRO H 156 0 -7.46 CISPEP 2 GLU H 157 PRO H 158 0 0.88 CISPEP 3 TYR L 142 PRO L 143 0 -1.74 SITE 1 AC1 4 LEU H 4 VAL H 5 GLN H 6 ARG H 105 SITE 1 AC2 4 PRO H 132 ARG H 219 VAL H 220 GLU H 221 SITE 1 AC3 4 PRO H 156 GLU H 157 TYR H 185 HOH H 431 SITE 1 AC4 3 ASP H 56 THR H 57 HOH H 441 SITE 1 AC5 7 SER H 84 SER H 112 SER H 113 SER H 181 SITE 2 AC5 7 SER H 182 GLY H 183 HOH H 426 SITE 1 AC6 7 GLU H 46 TRP H 47 HOH H 434 VAL L 96 SITE 2 AC6 7 VAL L 97 PHE L 98 HOH L 417 SITE 1 AC7 3 TYR L 2 VAL L 3 ASN L 26 SITE 1 AC8 5 LYS L 31 TRP L 91 ASP L 92 THR L 93 SITE 2 AC8 5 HOH L 433 SITE 1 AC9 4 PRO L 8 GLY L 100 GLY L 101 HOH L 416 SITE 1 AD1 4 GLU L 83 VAL L 106 TYR L 142 TYR L 174 SITE 1 AD2 4 LYS L 158 ALA L 159 GLY L 160 VAL L 161 SITE 1 AD3 4 PRO L 7 ARG L 20 THR L 22 FMT L 309 SITE 1 AD4 5 GLN L 37 LYS L 39 PHE L 62 GLY L 81 SITE 2 AD4 5 ASP L 82 SITE 1 AD5 4 VAL L 11 ALA L 19 ARG L 20 FMT L 307 SITE 1 AD6 3 PRO H 176 THR L 164 THR L 165 CRYST1 50.998 53.195 62.050 107.91 101.42 96.94 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019609 0.002387 0.005078 0.00000 SCALE2 0.000000 0.018938 0.006861 0.00000 SCALE3 0.000000 0.000000 0.017487 0.00000