HEADER TRANSLATION 03-JUN-16 5L7J TITLE CRYSTAL STRUCTURE OF ELP3 FROM DEHALOCOCCOIDES MCCARTYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELP3 FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEHALOCOCCOIDES MCCARTYI BTF08; SOURCE 3 ORGANISM_TAXID: 1193806; SOURCE 4 GENE: BTF_573; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELONGATOR, TRNA MODIFICATION, ELP3, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.GLATT,C.W.MUELLER REVDAT 3 21-SEP-16 5L7J 1 JRNL REVDAT 2 10-AUG-16 5L7J 1 JRNL REVDAT 1 03-AUG-16 5L7J 0 JRNL AUTH S.GLATT,R.ZABEL,O.KOLAJ-ROBIN,O.F.ONUMA,F.BAUDIN, JRNL AUTH 2 A.GRAZIADEI,V.TAVERNITI,T.Y.LIN,F.BAYMANN,B.SERAPHIN, JRNL AUTH 3 K.D.BREUNIG,C.W.MULLER JRNL TITL STRUCTURAL BASIS FOR TRNA MODIFICATION BY ELP3 FROM JRNL TITL 2 DEHALOCOCCOIDES MCCARTYI. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 794 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27455459 JRNL DOI 10.1038/NSMB.3265 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2940 - 5.9270 1.00 2677 142 0.1654 0.1881 REMARK 3 2 5.9270 - 4.7063 1.00 2675 145 0.1543 0.1794 REMARK 3 3 4.7063 - 4.1119 1.00 2671 141 0.1385 0.1917 REMARK 3 4 4.1119 - 3.7362 1.00 2655 145 0.1641 0.1808 REMARK 3 5 3.7362 - 3.4685 1.00 2646 136 0.1751 0.2303 REMARK 3 6 3.4685 - 3.2641 1.00 2682 141 0.0000 0.1757 REMARK 3 7 3.2641 - 3.1006 1.00 2671 135 0.0000 0.2280 REMARK 3 8 3.1006 - 2.9657 1.00 2683 140 0.0000 0.2770 REMARK 3 9 2.9657 - 2.8516 1.00 2636 143 0.0000 0.2626 REMARK 3 10 2.8516 - 2.7532 1.00 2680 142 0.0000 0.2677 REMARK 3 11 2.7532 - 2.6671 0.99 2651 136 0.0000 0.2740 REMARK 3 12 2.6671 - 2.5909 1.00 2657 143 0.0000 0.3192 REMARK 3 13 2.5909 - 2.5227 1.00 2649 140 0.0000 0.2563 REMARK 3 14 2.5227 - 2.4611 1.00 2668 136 0.0000 0.2816 REMARK 3 15 2.4611 - 2.4052 1.00 2663 142 0.0000 0.2896 REMARK 3 16 2.4052 - 2.3540 0.99 2645 141 0.0000 0.3826 REMARK 3 17 2.3540 - 2.3069 0.99 2640 142 0.0000 0.2624 REMARK 3 18 2.3069 - 2.2634 0.99 2653 137 0.0000 0.3392 REMARK 3 19 2.2634 - 2.2230 0.99 2636 137 0.0000 0.3478 REMARK 3 20 2.2230 - 2.1853 0.99 2651 138 0.0000 0.3676 REMARK 3 21 2.1853 - 2.1500 0.97 2578 134 0.0000 0.3863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3252 REMARK 3 ANGLE : 0.621 4389 REMARK 3 CHIRALITY : 0.023 488 REMARK 3 PLANARITY : 0.003 561 REMARK 3 DIHEDRAL : 10.872 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5722 -17.8796 7.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.6195 T22: 0.5143 REMARK 3 T33: 0.4413 T12: -0.0533 REMARK 3 T13: -0.0234 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.9404 L22: 7.5800 REMARK 3 L33: 2.3453 L12: -1.3192 REMARK 3 L13: 0.8363 L23: -2.8891 REMARK 3 S TENSOR REMARK 3 S11: 0.2690 S12: 0.3296 S13: 0.1358 REMARK 3 S21: -0.5898 S22: 0.1140 S23: 0.6106 REMARK 3 S31: -0.0180 S32: -0.1039 S33: -0.3372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2832 -20.9227 6.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.3757 REMARK 3 T33: 0.3873 T12: -0.0120 REMARK 3 T13: 0.0158 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.3003 L22: 3.0338 REMARK 3 L33: 4.6123 L12: 0.0319 REMARK 3 L13: -1.1241 L23: -0.9541 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: 0.1475 S13: 0.3743 REMARK 3 S21: -0.2342 S22: -0.0196 S23: -0.1760 REMARK 3 S31: -0.2290 S32: 0.1377 S33: -0.0941 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0811 -18.6765 -11.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.8220 T22: 0.8227 REMARK 3 T33: 0.4663 T12: 0.0237 REMARK 3 T13: -0.0405 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 7.0104 L22: 4.3428 REMARK 3 L33: 4.4903 L12: -3.0291 REMARK 3 L13: -1.0881 L23: 0.8686 REMARK 3 S TENSOR REMARK 3 S11: 0.4834 S12: 1.2467 S13: -0.0475 REMARK 3 S21: -0.8338 S22: -0.4834 S23: 0.4710 REMARK 3 S31: -0.3562 S32: -0.6270 S33: -0.0212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1402 -33.2564 2.7362 REMARK 3 T TENSOR REMARK 3 T11: 0.5031 T22: 0.7658 REMARK 3 T33: 0.6040 T12: 0.1425 REMARK 3 T13: 0.0744 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.9629 L22: 4.3149 REMARK 3 L33: 6.3300 L12: -0.5956 REMARK 3 L13: -0.7591 L23: -0.6490 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.2119 S13: -0.0583 REMARK 3 S21: -0.2604 S22: -0.1742 S23: -0.6452 REMARK 3 S31: 0.4673 S32: 0.7840 S33: 0.0854 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979230 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58785 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 2.30900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.3 AND 4% PEG 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.79000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 79.29000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 79.29000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 279 REMARK 465 ARG A 280 REMARK 465 ASP A 281 REMARK 465 ILE A 282 REMARK 465 PRO A 283 REMARK 465 ALA A 284 REMARK 465 VAL A 285 REMARK 465 PHE A 286 REMARK 465 ILE A 287 REMARK 465 SER A 288 REMARK 465 ALA A 289 REMARK 465 GLY A 290 REMARK 465 LEU A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 SER A 294 REMARK 465 LEU A 295 REMARK 465 ARG A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 VAL A 299 REMARK 465 ARG A 300 REMARK 465 GLN A 301 REMARK 465 ILE A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 ARG A 306 REMARK 465 HIS A 307 REMARK 465 GLN A 308 REMARK 465 GLY A 319 REMARK 465 HIS A 320 REMARK 465 ARG A 321 REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 LYS A 324 REMARK 465 GLY A 325 REMARK 465 GLN A 326 REMARK 465 THR A 327 REMARK 465 GLU A 398 REMARK 465 GLN A 399 REMARK 465 GLY A 400 REMARK 465 ASP A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 ALA A 404 REMARK 465 GLN A 405 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 26 CG CD CE NZ REMARK 480 ARG A 66 NE CZ NH1 NH2 REMARK 480 LYS A 142 CE NZ REMARK 480 ARG A 176 CZ NH1 NH2 REMARK 480 LYS A 209 CE NZ REMARK 480 GLU A 237 CD OE1 OE2 REMARK 480 ARG A 277 CD NE CZ NH1 NH2 REMARK 480 LYS A 309 CB CG CD CE NZ REMARK 480 ARG A 311 CD NE CZ NH1 NH2 REMARK 480 GLU A 330 CD OE1 OE2 REMARK 480 LYS A 380 CB CG CD CE NZ REMARK 480 ARG A 411 CZ NH1 NH2 REMARK 480 GLU A 448 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 115 O HOH A 601 2.01 REMARK 500 O HOH A 603 O HOH A 632 2.09 REMARK 500 OE2 GLU A 54 O HOH A 602 2.09 REMARK 500 O PHE A 33 O HOH A 603 2.12 REMARK 500 OG1 THR A 154 O HOH A 604 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 257 OG1 THR A 257 3454 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 139 63.12 -113.73 REMARK 500 CYS A 140 57.33 -158.56 REMARK 500 GLN A 161 -62.96 65.14 REMARK 500 ARG A 173 -59.79 63.57 REMARK 500 PHE A 223 -106.07 -119.99 REMARK 500 PRO A 232 105.94 -57.92 REMARK 500 ARG A 316 16.54 -144.37 REMARK 500 SER A 369 74.02 -103.63 REMARK 500 GLN A 375 -57.74 59.21 REMARK 500 ARG A 407 -2.84 63.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 FES A 502 S1 122.4 REMARK 620 3 FES A 502 S2 104.2 91.1 REMARK 620 4 CYS A 30 SG 108.3 122.4 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 310 SG REMARK 620 2 CYS A 312 SG 90.5 REMARK 620 3 CYS A 315 SG 104.4 126.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 FES A 502 S1 113.3 REMARK 620 3 FES A 502 S2 116.5 91.1 REMARK 620 4 CYS A 30 SG 108.4 107.6 118.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 502 DBREF 5L7J A 1 459 UNP M1Q3U6 M1Q3U6_9CHLR 1 459 SEQADV 5L7J ALA A 353 UNP M1Q3U6 VAL 353 VARIANT SEQRES 1 A 459 MSE LYS LYS LEU SER ARG THR ILE SER GLY VAL THR PRO SEQRES 2 A 459 VAL ALA VAL MSE THR LYS PRO LEU PRO CYS PRO GLY LYS SEQRES 3 A 459 CYS ILE TYR CYS PRO THR PHE ALA ALA THR PRO GLN SER SEQRES 4 A 459 TYR THR PRO GLU SER PRO ALA VAL LEU ARG ALA LYS SER SEQRES 5 A 459 CYS GLU TYR GLN ALA TYR LYS GLN VAL ALA LEU ARG LEU SEQRES 6 A 459 ARG ILE ILE GLN ASP MSE GLY HIS PRO THR ASP LYS VAL SEQRES 7 A 459 GLU LEU ILE ILE MSE GLY GLY THR PHE LEU SER ALA ASP SEQRES 8 A 459 ILE THR TYR GLN TYR GLY PHE ILE LYS ASP CYS TYR ASP SEQRES 9 A 459 ALA LEU ASN GLY VAL VAL ALA GLY SER LEU GLU GLU ALA SEQRES 10 A 459 LYS THR ILE ASN GLU THR ALA GLN HIS ARG CYS VAL GLY SEQRES 11 A 459 LEU CYS ILE GLU THR ARG PRO ASP ILE CYS GLY LYS ALA SEQRES 12 A 459 GLU ILE GLN ARG MSE ILE ASP PHE GLY THR THR ARG VAL SEQRES 13 A 459 GLU LEU GLY VAL GLN MSE LEU ASP ASP ASP ILE TYR LYS SEQRES 14 A 459 LEU VAL GLU ARG GLY HIS ARG VAL SER ASP VAL ALA GLU SEQRES 15 A 459 ALA THR CYS LEU LEU ARG GLU TYR GLY LEU LYS VAL HIS SEQRES 16 A 459 TYR HIS TRP MSE PRO GLY LEU PRO GLY SER SER PRO GLU SEQRES 17 A 459 LYS ASP LEU ALA LEU SER ARG MSE VAL PHE GLU ASP PRO SEQRES 18 A 459 ARG PHE CYS PRO ASP GLY LEU LYS LEU TYR PRO THR MSE SEQRES 19 A 459 VAL VAL GLU GLY THR ILE LEU GLU GLN TRP TRP LYS GLU SEQRES 20 A 459 GLY ARG TYR THR PRO TYR PRO ASN GLY THR MSE THR GLY SEQRES 21 A 459 LEU ILE ALA ASP ILE LYS ALA LEU VAL PRO PRO TYR VAL SEQRES 22 A 459 ARG ILE SER ARG VAL LEU ARG ASP ILE PRO ALA VAL PHE SEQRES 23 A 459 ILE SER ALA GLY LEU LYS ASP SER LEU ARG ASP GLY VAL SEQRES 24 A 459 ARG GLN ILE LEU GLU SER ARG HIS GLN LYS CYS ARG CYS SEQRES 25 A 459 ILE ARG CYS ARG GLU TYR GLY HIS ARG GLN ARG LYS GLY SEQRES 26 A 459 GLN THR SER GLY GLU PRO THR LEU ARG ARG LEU ASP TYR SEQRES 27 A 459 PRO ALA SER GLY GLY LYS GLU ILE PHE LEU SER PHE GLU SEQRES 28 A 459 ASP ALA SER ASP THR LEU TYR GLY LEU LEU ARG LEU ARG SEQRES 29 A 459 ILE PRO CYS ALA SER LEU PRO VAL LEU GLY GLN LYS TYR SEQRES 30 A 459 GLY ALA LYS THR GLY LEU VAL ARG GLU LEU HIS VAL TYR SEQRES 31 A 459 GLY THR GLU LEU SER LEU GLY GLU GLN GLY ASP GLN SER SEQRES 32 A 459 ALA GLN HIS ARG GLY LEU GLY ARG LYS LEU LEU ALA GLU SEQRES 33 A 459 ALA GLU CYS LEU ALA ARG ASP GLU PHE GLY LEU ASP SER SEQRES 34 A 459 LEU ALA ILE LEU SER GLY VAL GLY ALA ARG GLU TYR TYR SEQRES 35 A 459 ARG SER LEU GLY TYR GLU LEU VAL ALA GLY TYR MSE CYS SEQRES 36 A 459 LYS HIS LEU ASP MODRES 5L7J MSE A 17 MET MODIFIED RESIDUE MODRES 5L7J MSE A 71 MET MODIFIED RESIDUE MODRES 5L7J MSE A 83 MET MODIFIED RESIDUE MODRES 5L7J MSE A 148 MET MODIFIED RESIDUE MODRES 5L7J MSE A 162 MET MODIFIED RESIDUE MODRES 5L7J MSE A 199 MET MODIFIED RESIDUE MODRES 5L7J MSE A 216 MET MODIFIED RESIDUE MODRES 5L7J MSE A 234 MET MODIFIED RESIDUE MODRES 5L7J MSE A 258 MET MODIFIED RESIDUE MODRES 5L7J MSE A 454 MET MODIFIED RESIDUE HET MSE A 17 8 HET MSE A 71 8 HET MSE A 83 8 HET MSE A 148 8 HET MSE A 162 8 HET MSE A 199 8 HET MSE A 216 8 HET MSE A 234 8 HET MSE A 258 8 HET MSE A 454 8 HET ZN A 501 1 HET FES A 502 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 FES FE2 S2 FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 THR A 36 THR A 41 5 6 HELIX 2 AA2 SER A 44 CYS A 53 1 10 HELIX 3 AA3 GLN A 56 GLY A 72 1 17 HELIX 4 AA4 THR A 86 ALA A 90 5 5 HELIX 5 AA5 ASP A 91 GLY A 108 1 18 HELIX 6 AA6 SER A 113 GLU A 122 1 10 HELIX 7 AA7 GLY A 141 GLY A 152 1 12 HELIX 8 AA8 ARG A 176 TYR A 190 1 15 HELIX 9 AA9 SER A 206 VAL A 217 1 12 HELIX 10 AB1 THR A 239 GLU A 247 1 9 HELIX 11 AB2 PRO A 254 LEU A 268 1 15 HELIX 12 AB3 ILE A 313 GLU A 317 5 5 HELIX 13 AB4 ARG A 407 GLU A 424 1 18 HELIX 14 AB5 GLY A 435 GLY A 437 5 3 HELIX 15 AB6 ALA A 438 SER A 444 1 7 SHEET 1 AA1 7 THR A 12 MSE A 17 0 SHEET 2 AA1 7 LYS A 77 GLY A 85 1 O MSE A 83 N VAL A 16 SHEET 3 AA1 7 ARG A 127 THR A 135 1 O CYS A 132 N LEU A 80 SHEET 4 AA1 7 ARG A 155 GLN A 161 1 O GLY A 159 N THR A 135 SHEET 5 AA1 7 LYS A 193 TRP A 198 1 O HIS A 197 N LEU A 158 SHEET 6 AA1 7 GLY A 227 LEU A 230 1 O LYS A 229 N TYR A 196 SHEET 7 AA1 7 ARG A 274 ARG A 277 1 O SER A 276 N LEU A 230 SHEET 1 AA2 7 THR A 332 ALA A 340 0 SHEET 2 AA2 7 GLY A 343 GLU A 351 -1 O PHE A 347 N LEU A 336 SHEET 3 AA2 7 LEU A 357 ILE A 365 -1 O TYR A 358 N PHE A 350 SHEET 4 AA2 7 THR A 381 VAL A 389 -1 O LEU A 383 N ARG A 364 SHEET 5 AA2 7 SER A 429 ILE A 432 1 O ALA A 431 N GLY A 382 SHEET 6 AA2 7 TYR A 453 HIS A 457 -1 O MSE A 454 N ILE A 432 SHEET 7 AA2 7 GLU A 448 VAL A 450 -1 N VAL A 450 O TYR A 453 LINK C VAL A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N THR A 18 1555 1555 1.33 LINK SG CYS A 27 FE1 FES A 502 1555 1555 2.30 LINK SG CYS A 30 FE1 FES A 502 1555 1555 2.30 LINK C ASP A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N GLY A 72 1555 1555 1.33 LINK C ILE A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N GLY A 84 1555 1555 1.33 LINK C ARG A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N ILE A 149 1555 1555 1.33 LINK C GLN A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N LEU A 163 1555 1555 1.33 LINK C TRP A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N PRO A 200 1555 1555 1.34 LINK C ARG A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N VAL A 217 1555 1555 1.33 LINK C THR A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N VAL A 235 1555 1555 1.33 LINK C THR A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N THR A 259 1555 1555 1.33 LINK SG CYS A 310 ZN ZN A 501 1555 1555 2.30 LINK SG CYS A 312 ZN ZN A 501 1555 1555 2.30 LINK SG CYS A 315 ZN ZN A 501 1555 1555 2.31 LINK C TYR A 453 N MSE A 454 1555 1555 1.33 LINK C MSE A 454 N CYS A 455 1555 1555 1.33 LINK SG CYS A 27 FE2 FES A 502 1555 4555 2.30 LINK SG CYS A 30 FE2 FES A 502 1555 4555 2.30 CISPEP 1 TYR A 390 GLY A 391 0 3.53 SITE 1 AC1 3 CYS A 310 CYS A 312 CYS A 315 SITE 1 AC2 3 CYS A 27 TYR A 29 CYS A 30 CRYST1 75.460 158.580 93.580 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013252 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010686 0.00000