HEADER LIPID BINDING PROTEIN 03-JUN-16 5L7K TITLE THE CRYSTAL STRUCTURE OF MYRISTOYLATED NPHP3 PEPTIDE IN COMPLEX WITH TITLE 2 UNC119A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN UNC-119 HOMOLOG A; COMPND 3 CHAIN: A, G; COMPND 4 SYNONYM: RETINAL PROTEIN 4,HRG4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLY-THR-ALA-SER-SER-LEU; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UNC119, RG4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS PROTEIN TRANSPORT, LIPID BINDING PROTEIN, MYRISTOYLATION, BETA- KEYWDS 2 SANDWISH EXPDTA X-RAY DIFFRACTION AUTHOR E.K.FANSA,M.JAISWAL,A.WITTINGHOFER REVDAT 4 10-JAN-24 5L7K 1 REMARK REVDAT 3 05-OCT-16 5L7K 1 JRNL REVDAT 2 28-SEP-16 5L7K 1 REVDAT 1 10-AUG-16 5L7K 0 JRNL AUTH M.JAISWAL,E.K.FANSA,S.K.KOSLING,T.MEJUCH,H.WALDMANN, JRNL AUTH 2 A.WITTINGHOFER JRNL TITL NOVEL BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO THE JRNL TITL 2 INTERACTION OF MYRISTOYLATED CARGO WITH UNC119 PROTEIN AND JRNL TITL 3 THEIR RELEASE BY ARL2/3. JRNL REF J.BIOL.CHEM. V. 291 20766 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27481943 JRNL DOI 10.1074/JBC.M116.741827 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2812 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2607 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3786 ; 1.441 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6001 ; 0.840 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.944 ;23.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;15.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3140 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 715 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 4.037 ; 6.190 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1302 ; 4.031 ; 6.187 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 6.045 ; 9.262 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5L7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3RBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75 M (NH4)2SO4, 0.1 M CAPS (PH 10.0) REMARK 280 AND 0.2 M LI2SO4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.13500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.97000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.48500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.13500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.45500 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.97000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 44.13500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.45500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 44.13500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 108 REMARK 465 PRO A 109 REMARK 465 VAL A 110 REMARK 465 SER A 111 REMARK 465 GLU A 112 REMARK 465 ARG A 113 REMARK 465 LEU A 114 REMARK 465 PRO A 115 REMARK 465 ILE A 116 REMARK 465 ASN A 117 REMARK 465 ARG A 118 REMARK 465 ARG A 119 REMARK 465 ASP A 120 REMARK 465 LEU A 121 REMARK 465 ASP A 122 REMARK 465 PRO A 123 REMARK 465 ASN A 124 REMARK 465 ALA A 125 REMARK 465 GLY A 126 REMARK 465 PRO G 108 REMARK 465 PRO G 109 REMARK 465 VAL G 110 REMARK 465 SER G 111 REMARK 465 GLU G 112 REMARK 465 ARG G 113 REMARK 465 LEU G 114 REMARK 465 PRO G 115 REMARK 465 ILE G 116 REMARK 465 ASN G 117 REMARK 465 ARG G 118 REMARK 465 ARG G 119 REMARK 465 ASP G 120 REMARK 465 LEU G 121 REMARK 465 ASP G 122 REMARK 465 PRO G 123 REMARK 465 ASN G 124 REMARK 465 ALA G 125 REMARK 465 GLY G 126 REMARK 465 ARG G 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN G 58 CG CD OE1 NE2 REMARK 470 ARG G 139 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY B 2 O1 MYR B 101 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN G 69 NH2 ARG G 141 8545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG G 139 C LEU G 140 N -0.265 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU G 68 123.48 -27.71 REMARK 500 PHE G 103 131.34 -177.02 REMARK 500 ARG G 139 40.32 -102.99 REMARK 500 ARG G 141 -69.25 -109.74 REMARK 500 LEU G 171 106.30 -57.26 REMARK 500 LYS G 173 144.80 -170.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG G 139 -10.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR B 101 DBREF 5L7K A 58 237 UNP Q13432 U119A_HUMAN 58 237 DBREF 5L7K B 2 7 PDB 5L7K 5L7K 2 7 DBREF 5L7K G 58 237 UNP Q13432 U119A_HUMAN 58 237 SEQRES 1 A 180 GLN PRO ILE GLY PRO GLU ASP VAL LEU GLY LEU GLN ARG SEQRES 2 A 180 ILE THR GLY ASP TYR LEU CYS SER PRO GLU GLU ASN ILE SEQRES 3 A 180 TYR LYS ILE ASP PHE VAL ARG PHE LYS ILE ARG ASP MET SEQRES 4 A 180 ASP SER GLY THR VAL LEU PHE GLU ILE LYS LYS PRO PRO SEQRES 5 A 180 VAL SER GLU ARG LEU PRO ILE ASN ARG ARG ASP LEU ASP SEQRES 6 A 180 PRO ASN ALA GLY ARG PHE VAL ARG TYR GLN PHE THR PRO SEQRES 7 A 180 ALA PHE LEU ARG LEU ARG GLN VAL GLY ALA THR VAL GLU SEQRES 8 A 180 PHE THR VAL GLY ASP LYS PRO VAL ASN ASN PHE ARG MET SEQRES 9 A 180 ILE GLU ARG HIS TYR PHE ARG ASN GLN LEU LEU LYS SER SEQRES 10 A 180 PHE ASP PHE HIS PHE GLY PHE CYS ILE PRO SER SER LYS SEQRES 11 A 180 ASN THR CYS GLU HIS ILE TYR ASP PHE PRO PRO LEU SER SEQRES 12 A 180 GLU GLU LEU ILE SER GLU MET ILE ARG HIS PRO TYR GLU SEQRES 13 A 180 THR GLN SER ASP SER PHE TYR PHE VAL ASP ASP ARG LEU SEQRES 14 A 180 VAL MET HIS ASN LYS ALA ASP TYR SER TYR SER SEQRES 1 B 6 GLY THR ALA SER SER LEU SEQRES 1 G 180 GLN PRO ILE GLY PRO GLU ASP VAL LEU GLY LEU GLN ARG SEQRES 2 G 180 ILE THR GLY ASP TYR LEU CYS SER PRO GLU GLU ASN ILE SEQRES 3 G 180 TYR LYS ILE ASP PHE VAL ARG PHE LYS ILE ARG ASP MET SEQRES 4 G 180 ASP SER GLY THR VAL LEU PHE GLU ILE LYS LYS PRO PRO SEQRES 5 G 180 VAL SER GLU ARG LEU PRO ILE ASN ARG ARG ASP LEU ASP SEQRES 6 G 180 PRO ASN ALA GLY ARG PHE VAL ARG TYR GLN PHE THR PRO SEQRES 7 G 180 ALA PHE LEU ARG LEU ARG GLN VAL GLY ALA THR VAL GLU SEQRES 8 G 180 PHE THR VAL GLY ASP LYS PRO VAL ASN ASN PHE ARG MET SEQRES 9 G 180 ILE GLU ARG HIS TYR PHE ARG ASN GLN LEU LEU LYS SER SEQRES 10 G 180 PHE ASP PHE HIS PHE GLY PHE CYS ILE PRO SER SER LYS SEQRES 11 G 180 ASN THR CYS GLU HIS ILE TYR ASP PHE PRO PRO LEU SER SEQRES 12 G 180 GLU GLU LEU ILE SER GLU MET ILE ARG HIS PRO TYR GLU SEQRES 13 G 180 THR GLN SER ASP SER PHE TYR PHE VAL ASP ASP ARG LEU SEQRES 14 G 180 VAL MET HIS ASN LYS ALA ASP TYR SER TYR SER HET MYR B 101 15 HETNAM MYR MYRISTIC ACID FORMUL 4 MYR C14 H28 O2 FORMUL 5 HOH *47(H2 O) HELIX 1 AA1 GLY A 61 LEU A 66 1 6 HELIX 2 AA2 SER A 78 ASN A 82 5 5 HELIX 3 AA3 THR A 134 LEU A 140 5 7 HELIX 4 AA4 SER A 200 HIS A 210 1 11 HELIX 5 AA5 GLY B 2 LEU B 7 5 6 HELIX 6 AA6 GLY G 61 LEU G 66 1 6 HELIX 7 AA7 SER G 78 ASN G 82 5 5 HELIX 8 AA8 THR G 134 LEU G 140 5 7 HELIX 9 AA9 SER G 200 HIS G 210 1 11 SHEET 1 AA1 4 VAL A 101 LYS A 106 0 SHEET 2 AA1 4 ASP A 87 ASP A 95 -1 N PHE A 91 O ILE A 105 SHEET 3 AA1 4 GLN A 142 THR A 150 -1 O THR A 146 N LYS A 92 SHEET 4 AA1 4 LYS A 187 ASP A 195 -1 O TYR A 194 N VAL A 143 SHEET 1 AA2 5 PHE A 128 GLN A 132 0 SHEET 2 AA2 5 ARG A 225 SER A 235 1 O ASP A 233 N TYR A 131 SHEET 3 AA2 5 THR A 214 VAL A 222 -1 N TYR A 220 O VAL A 227 SHEET 4 AA2 5 VAL A 156 PHE A 167 -1 N ARG A 160 O PHE A 221 SHEET 5 AA2 5 GLN A 170 CYS A 182 -1 O LEU A 172 N HIS A 165 SHEET 1 AA3 4 VAL G 101 LYS G 106 0 SHEET 2 AA3 4 ASP G 87 ASP G 95 -1 N ILE G 93 O PHE G 103 SHEET 3 AA3 4 GLN G 142 THR G 150 -1 O THR G 146 N LYS G 92 SHEET 4 AA3 4 LYS G 187 ASP G 195 -1 O ASN G 188 N PHE G 149 SHEET 1 AA4 5 VAL G 129 GLN G 132 0 SHEET 2 AA4 5 ARG G 225 SER G 235 1 O ASP G 233 N TYR G 131 SHEET 3 AA4 5 THR G 214 VAL G 222 -1 N TYR G 220 O VAL G 227 SHEET 4 AA4 5 VAL G 156 PHE G 167 -1 N ARG G 160 O PHE G 221 SHEET 5 AA4 5 LEU G 171 CYS G 182 -1 O PHE G 175 N GLU G 163 LINK N GLY B 2 C1 MYR B 101 1555 1555 1.47 SITE 1 AC1 6 TYR A 131 TYR A 194 TYR A 234 GLY B 2 SITE 2 AC1 6 THR B 3 ALA B 4 CRYST1 88.270 88.270 105.940 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009439 0.00000