HEADER IMMUNE SYSTEM 04-JUN-16 5L7X TITLE AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSYLATED, CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 OTHER_DETAILS: IGG1-KAPPA HEAVY CHAIN, 1-214; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 OTHER_DETAILS: IGG1-KAPPA LIGHT CHAIN, 1-214 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090 KEYWDS FAB, ANTIBODY FRAGMENT, GLYCOSILATED, AFAMIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.RUPP,A.NASCHBERGER REVDAT 7 23-OCT-24 5L7X 1 REMARK REVDAT 6 10-JAN-24 5L7X 1 HETSYN REVDAT 5 29-JUL-20 5L7X 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 31-JAN-18 5L7X 1 REMARK REVDAT 3 21-DEC-16 5L7X 1 JRNL REVDAT 2 07-DEC-16 5L7X 1 JRNL REVDAT 1 13-JUL-16 5L7X 0 JRNL AUTH A.NASCHBERGER,B.G.FURNROHR,T.LENAC ROVIS,S.MALIC, JRNL AUTH 2 K.SCHEFFZEK,H.DIEPLINGER,B.RUPP JRNL TITL THE N14 ANTI-AFAMIN ANTIBODY FAB: A RARE VL1 CDR JRNL TITL 2 GLYCOSYLATION, CRYSTALLOGRAPHIC RE-SEQUENCING, MOLECULAR JRNL TITL 3 PLASTICITY AND CONSERVATIVE VERSUS ENTHUSIASTIC MODELLING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 1267 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27917827 JRNL DOI 10.1107/S205979831601723X REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 34797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.149 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3422 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3103 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4650 ; 1.501 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7238 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;36.021 ;24.574 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;14.261 ;15.027 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3782 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 727 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 1.479 ; 3.603 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1691 ; 1.476 ; 3.597 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2114 ; 2.262 ; 6.715 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2115 ; 2.263 ; 6.722 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1730 ; 2.421 ; 4.328 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1730 ; 2.392 ; 4.329 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2532 ; 3.577 ; 7.718 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3773 ; 6.854 ;18.034 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3756 ; 6.852 ;17.935 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 RESIDUE RANGE : L 301 L 301 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1648 -14.3648 -1.0109 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1962 REMARK 3 T33: 0.0334 T12: -0.0324 REMARK 3 T13: -0.0417 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.8547 L22: 2.9804 REMARK 3 L33: 2.4240 L12: 0.0099 REMARK 3 L13: 0.3763 L23: -0.9178 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.1773 S13: 0.1081 REMARK 3 S21: -0.1542 S22: -0.0792 S23: 0.1715 REMARK 3 S31: -0.0975 S32: 0.0503 S33: 0.0852 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8626 6.3249 -9.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2244 REMARK 3 T33: 0.0182 T12: 0.0164 REMARK 3 T13: 0.0389 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 2.8101 L22: 1.2104 REMARK 3 L33: 3.0009 L12: -0.0118 REMARK 3 L13: 0.5852 L23: -0.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: 0.0923 S13: 0.0143 REMARK 3 S21: -0.1113 S22: -0.0071 S23: -0.0171 REMARK 3 S31: -0.0524 S32: 0.1753 S33: -0.0852 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1300 -11.6821 19.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.1405 REMARK 3 T33: 0.0134 T12: -0.0193 REMARK 3 T13: 0.0093 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.8296 L22: 1.7220 REMARK 3 L33: 1.9254 L12: 0.2631 REMARK 3 L13: -0.5118 L23: 0.0867 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.0057 S13: 0.0430 REMARK 3 S21: 0.1052 S22: -0.0154 S23: 0.1017 REMARK 3 S31: 0.0013 S32: -0.0527 S33: 0.1126 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 214 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2307 12.2489 4.6278 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.2330 REMARK 3 T33: 0.0797 T12: 0.0467 REMARK 3 T13: 0.0723 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.4409 L22: 2.0815 REMARK 3 L33: 3.9782 L12: -0.0840 REMARK 3 L13: -0.9570 L23: -0.2833 REMARK 3 S TENSOR REMARK 3 S11: 0.1975 S12: 0.3026 S13: 0.3496 REMARK 3 S21: -0.1092 S22: 0.0208 S23: 0.1329 REMARK 3 S31: -0.6085 S32: -0.2565 S33: -0.2183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TORROIDAL MIRROR SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 44.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.93400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1IL1 REMARK 200 REMARK 200 REMARK: BLOCK-SHAPED, ISOTROPIC APPEARANCE, CLEAR, ROBUST REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 NL FAB (10MG/ML IN 20 MM HEPES PH REMARK 280 7.5, 150 MM NACL) PLUS 200 NL COCKTAIL (30% PEG 1K, 200MM REMARK 280 AMMONIUM FLUORIDE, NH4F), PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.74550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.47050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.09800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.47050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.74550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.09800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 127 REMARK 465 SER H 128 REMARK 465 ALA H 129 REMARK 465 ALA H 130 REMARK 465 GLN H 131 REMARK 465 THR H 132 REMARK 465 ASN H 133 REMARK 465 SER H 156 REMARK 465 GLY H 157 REMARK 465 SER H 158 REMARK 465 LEU H 159 REMARK 465 SER H 160 REMARK 465 SER H 161 REMARK 465 GLY H 162 REMARK 465 CYS H 215 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 76 54.62 34.38 REMARK 500 TYR H 96 -154.85 -121.50 REMARK 500 THR L 51 -49.77 73.70 REMARK 500 ARG L 211 10.27 -66.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 498 DISTANCE = 7.23 ANGSTROMS DBREF 5L7X H 1 215 PDB 5L7X 5L7X 1 215 DBREF 5L7X L 1 214 PDB 5L7X 5L7X 1 214 SEQRES 1 H 220 GLU VAL LYS LEU GLU GLU SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 220 PRO GLY ALA SER MET LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR PHE THR SER TYR ILE ILE HIS TRP LEU LYS GLN SEQRES 4 H 220 LYS PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 220 PRO TYR ASN ASP GLY SER LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 220 GLY LYS ALA THR LEU THR SER ASP LYS SER SER SER THR SEQRES 7 H 220 ALA TYR MET GLU LEU SER SER LEU ALA SER GLU ASP SER SEQRES 8 H 220 ALA VAL TYR TYR CYS THR ARG ASN TYR GLY SER ASP SER SEQRES 9 H 220 LEU ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SEQRES 10 H 220 SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 220 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 L 215 ASP ILE VAL LEU THR GLN THR PRO ALA ILE MET SER ALA SEQRES 2 L 215 SER LEU GLY GLU ARG VAL THR MET THR CYS THR ALA ASN SEQRES 3 L 215 SER SER VAL SER SER ASN TYR PHE HIS TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY SER SER PRO LYS LEU TRP ILE TYR SER THR SEQRES 5 L 215 SER ASN LEU ALA SER GLY VAL PRO THR ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR SER TYR SER LEU THR LEU SER SER SEQRES 7 L 215 MET GLU ALA GLU ASP ALA ALA THR TYR TYR CYS HIS GLN SEQRES 8 L 215 TYR HIS ARG SER PRO PRO THR PHE GLY SER GLY THR LYS SEQRES 9 L 215 LEU LYS MET LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS HET PG4 H 301 13 HET PEG H 302 7 HET PEG H 303 7 HET PEG H 304 7 HET 1PE L 301 16 HET NAG L 302 14 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN 1PE PEG400 HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 PG4 C8 H18 O5 FORMUL 4 PEG 3(C4 H10 O3) FORMUL 7 1PE C10 H22 O6 FORMUL 8 NAG C8 H15 N O6 FORMUL 9 HOH *223(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLU H 61 LYS H 64 5 4 HELIX 3 AA3 LYS H 73 SER H 75 5 3 HELIX 4 AA4 ALA H 83 SER H 87 5 5 HELIX 5 AA5 GLY H 97 ASP H 99 5 3 HELIX 6 AA6 PRO H 200 SER H 203 5 4 HELIX 7 AA7 SER L 29 ASN L 31 5 3 HELIX 8 AA8 GLU L 79 ALA L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 LYS H 3 GLU H 6 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O LYS H 23 N GLU H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N MET H 20 SHEET 4 AA1 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ASN H 95 -1 N ALA H 88 O LEU H 109 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N HIS H 35 O THR H 93 SHEET 5 AA2 6 LEU H 45 ASN H 52 -1 O ILE H 51 N ILE H 34 SHEET 6 AA2 6 GLY H 56 TYR H 59 -1 O GLY H 56 N ASN H 52 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ASN H 95 -1 N ALA H 88 O LEU H 109 SHEET 4 AA3 4 LEU H 100A TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 MET H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 LEU H 174 PRO H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 AA4 4 HIS H 164 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 MET H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 LEU H 174 PRO H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 AA5 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 AA6 3 THR H 204 LYS H 209 -1 O THR H 204 N HIS H 199 SHEET 1 AA7 4 LEU L 4 THR L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 24 N THR L 5 SHEET 3 AA7 4 SER L 70 LEU L 75 -1 O LEU L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 ILE L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 MET L 106 1 O LYS L 105 N MET L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 6 PHE L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 ILE L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 MET L 106 1 O LYS L 105 N MET L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB1 4 TYR L 173 THR L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AB2 4 SER L 153 ARG L 155 0 SHEET 2 AB2 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB2 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 AB2 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.09 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.07 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.15 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN L 26 C1 NAG L 302 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -9.57 CISPEP 2 GLU H 148 PRO H 149 0 0.63 CISPEP 3 TRP H 188 PRO H 189 0 5.63 CISPEP 4 THR L 7 PRO L 8 0 -6.99 CISPEP 5 SER L 94 PRO L 95 0 -2.18 CISPEP 6 TYR L 140 PRO L 141 0 1.71 CRYST1 67.491 72.196 88.941 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011243 0.00000