HEADER ANTIBIOTIC 06-JUN-16 5L82 TITLE NMR STRUCTURE OF ENTEROCIN K1 IN 50%/50% TFE/WATER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENTEROCOCCIN K1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM ENGEN0026; SOURCE 4 ORGANISM_TAXID: 1138917 KEYWDS STRUCTURE FROM CYANA 2.1, UNKNOWN FUNCTION, ANTIBIOTIC, MEMBRANE KEYWDS 2 INTERACTING, BACTERIOCIN, ENTK1 EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.OVCHINNIKOV,P.E.KRISTIANSEN,D.DIEP REVDAT 5 14-JUN-23 5L82 1 REMARK REVDAT 4 23-OCT-19 5L82 1 REMARK ATOM REVDAT 3 08-MAY-19 5L82 1 REMARK REVDAT 2 06-DEC-17 5L82 1 JRNL REVDAT 1 17-MAY-17 5L82 0 JRNL AUTH K.V.OVCHINNIKOV,P.E.KRISTIANSEN,D.STRAUME,M.S.JENSEN, JRNL AUTH 2 T.ALEKSANDRZAK-PIEKARCZYK,I.F.NES,D.B.DIEP JRNL TITL THE LEADERLESS BACTERIOCIN ENTEROCIN K1 IS HIGHLY POTENT JRNL TITL 2 AGAINST ENTEROCOCCUS FAECIUM: A STUDY ON STRUCTURE, TARGET JRNL TITL 3 SPECTRUM AND RECEPTOR. JRNL REF FRONT MICROBIOL V. 8 774 2017 JRNL REFN ESSN 1664-302X JRNL PMID 28515717 JRNL DOI 10.3389/FMICB.2017.00774 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM ENTEROCOCCIN K1, 50 % U-D REMARK 210 TFE, 50 % H2O, 0.2 MM NA DSS, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H PROTON; 2D DQF-COSY; 2D 1H-1H REMARK 210 NOESY; 2D 1H-13C HSQC; 2D 1H-15N REMARK 210 HSQC; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, SPARKY, XWINNMR, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 27 -46.74 -139.94 REMARK 500 1 TYR A 30 -58.53 -147.02 REMARK 500 1 PRO A 31 -167.34 -69.76 REMARK 500 1 GLU A 33 46.98 -86.84 REMARK 500 1 PRO A 35 -171.58 -69.78 REMARK 500 2 LYS A 2 60.94 -152.82 REMARK 500 2 HIS A 27 -46.70 -140.03 REMARK 500 2 TYR A 30 -58.49 -147.10 REMARK 500 2 PRO A 31 -167.38 -69.78 REMARK 500 2 GLU A 33 46.90 -86.79 REMARK 500 2 PRO A 35 -170.99 -69.81 REMARK 500 3 HIS A 27 -46.72 -140.00 REMARK 500 3 TYR A 30 -58.49 -147.06 REMARK 500 3 PRO A 31 -167.37 -69.77 REMARK 500 3 GLU A 33 46.96 -86.86 REMARK 500 3 PRO A 35 -171.31 -69.76 REMARK 500 4 HIS A 27 -46.64 -140.03 REMARK 500 4 TYR A 30 -58.53 -147.01 REMARK 500 4 PRO A 31 -167.33 -69.76 REMARK 500 4 GLU A 33 46.91 -86.82 REMARK 500 4 PRO A 35 -171.11 -69.73 REMARK 500 5 HIS A 27 -46.65 -140.04 REMARK 500 5 TYR A 30 -58.53 -147.03 REMARK 500 5 PRO A 31 -167.35 -69.78 REMARK 500 5 GLU A 33 46.86 -86.76 REMARK 500 5 PRO A 35 -170.99 -69.82 REMARK 500 6 HIS A 27 -46.74 -139.97 REMARK 500 6 TYR A 30 -58.49 -147.06 REMARK 500 6 PRO A 31 -167.34 -69.74 REMARK 500 6 GLU A 33 46.85 -86.74 REMARK 500 6 PRO A 35 -171.02 -69.77 REMARK 500 7 PHE A 3 170.30 -55.29 REMARK 500 7 HIS A 27 -46.69 -140.06 REMARK 500 7 TYR A 30 -58.48 -147.04 REMARK 500 7 PRO A 31 -167.35 -69.79 REMARK 500 7 GLU A 33 46.92 -86.82 REMARK 500 7 PRO A 35 -171.06 -69.71 REMARK 500 8 LYS A 2 70.46 57.92 REMARK 500 8 HIS A 27 -46.69 -140.05 REMARK 500 8 TYR A 30 -58.52 -147.07 REMARK 500 8 PRO A 31 -167.36 -69.78 REMARK 500 8 GLU A 33 46.91 -86.77 REMARK 500 8 PRO A 35 -171.60 -69.84 REMARK 500 9 LYS A 2 69.56 -159.04 REMARK 500 9 HIS A 27 -46.73 -139.99 REMARK 500 9 TYR A 30 -58.48 -147.03 REMARK 500 9 PRO A 31 -167.30 -69.76 REMARK 500 9 GLU A 33 46.85 -86.80 REMARK 500 9 PRO A 35 -171.44 -69.72 REMARK 500 10 HIS A 27 -46.77 -139.92 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34006 RELATED DB: BMRB DBREF 5L82 A 1 37 UNP L2P7L3 L2P7L3_ENTFC 1 37 SEQRES 1 A 37 MET LYS PHE LYS PHE ASN PRO THR GLY THR ILE VAL LYS SEQRES 2 A 37 LYS LEU THR GLN TYR GLU ILE ALA TRP PHE LYS ASN LYS SEQRES 3 A 37 HIS GLY TYR TYR PRO TRP GLU ILE PRO ARG CYS HELIX 1 AA1 PRO A 7 ASN A 25 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1