data_5L87 # _entry.id 5L87 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5L87 pdb_00005l87 10.2210/pdb5l87/pdb WWPDB D_1200000314 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-08 2 'Structure model' 1 1 2017-04-12 3 'Structure model' 1 2 2019-10-16 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' reflns_shell 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L87 _pdbx_database_status.recvd_initial_deposition_date 2016-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Human ortholog' _pdbx_database_related.db_id 2W84 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dawidowski, M.' 1 'Emmanouilidis, L.' 2 'Sattler, M.' 3 'Popowicz, G.M.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 355 _citation.language ? _citation.page_first 1416 _citation.page_last 1420 _citation.title 'Inhibitors of PEX14 disrupt protein import into glycosomes and kill Trypanosoma parasites.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aal1807 _citation.pdbx_database_id_PubMed 28360328 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dawidowski, M.' 1 ? primary 'Emmanouilidis, L.' 2 ? primary 'Kalel, V.C.' 3 ? primary 'Tripsianes, K.' 4 ? primary 'Schorpp, K.' 5 ? primary 'Hadian, K.' 6 ? primary 'Kaiser, M.' 7 ? primary 'Maser, P.' 8 ? primary 'Kolonko, M.' 9 ? primary 'Tanghe, S.' 10 ? primary 'Rodriguez, A.' 11 ? primary 'Schliebs, W.' 12 ? primary 'Erdmann, R.' 13 ? primary 'Sattler, M.' 14 ? primary 'Popowicz, G.M.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peroxin 14' 7883.075 1 ? ? ? ? 2 non-polymer syn '5-(1~{H}-indol-3-ylmethyl)-1-methyl-~{N}-(naphthalen-1-ylmethyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridine-3-carboxamide' 449.547 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAMWHTHSEREKRVSNAVEFLLDSRVRRTPTSSKVHFLKSKGLSAEEICEAFTKVGQPKTLNEIKRILS _entity_poly.pdbx_seq_one_letter_code_can GAMWHTHSEREKRVSNAVEFLLDSRVRRTPTSSKVHFLKSKGLSAEEICEAFTKVGQPKTLNEIKRILS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-(1~{H}-indol-3-ylmethyl)-1-methyl-~{N}-(naphthalen-1-ylmethyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridine-3-carboxamide' 6RD 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 TRP n 1 5 HIS n 1 6 THR n 1 7 HIS n 1 8 SER n 1 9 GLU n 1 10 ARG n 1 11 GLU n 1 12 LYS n 1 13 ARG n 1 14 VAL n 1 15 SER n 1 16 ASN n 1 17 ALA n 1 18 VAL n 1 19 GLU n 1 20 PHE n 1 21 LEU n 1 22 LEU n 1 23 ASP n 1 24 SER n 1 25 ARG n 1 26 VAL n 1 27 ARG n 1 28 ARG n 1 29 THR n 1 30 PRO n 1 31 THR n 1 32 SER n 1 33 SER n 1 34 LYS n 1 35 VAL n 1 36 HIS n 1 37 PHE n 1 38 LEU n 1 39 LYS n 1 40 SER n 1 41 LYS n 1 42 GLY n 1 43 LEU n 1 44 SER n 1 45 ALA n 1 46 GLU n 1 47 GLU n 1 48 ILE n 1 49 CYS n 1 50 GLU n 1 51 ALA n 1 52 PHE n 1 53 THR n 1 54 LYS n 1 55 VAL n 1 56 GLY n 1 57 GLN n 1 58 PRO n 1 59 LYS n 1 60 THR n 1 61 LEU n 1 62 ASN n 1 63 GLU n 1 64 ILE n 1 65 LYS n 1 66 ARG n 1 67 ILE n 1 68 LEU n 1 69 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 69 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PEX14 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma brucei brucei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6RD non-polymer . '5-(1~{H}-indol-3-ylmethyl)-1-methyl-~{N}-(naphthalen-1-ylmethyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridine-3-carboxamide' ? 'C28 H27 N5 O' 449.547 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 ALA 2 -1 ? ? ? A . n A 1 3 MET 3 0 ? ? ? A . n A 1 4 TRP 4 1 ? ? ? A . n A 1 5 HIS 5 2 ? ? ? A . n A 1 6 THR 6 3 ? ? ? A . n A 1 7 HIS 7 4 ? ? ? A . n A 1 8 SER 8 5 5 SER SER A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 ASN 16 13 13 ASN ASN A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 PHE 20 17 17 PHE PHE A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ARG 25 22 22 ARG ARG A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 PRO 30 27 27 PRO PRO A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 SER 33 30 30 SER SER A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 HIS 36 33 33 HIS HIS A . n A 1 37 PHE 37 34 34 PHE PHE A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LYS 39 36 36 LYS LYS A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 GLY 42 39 39 GLY GLY A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 ALA 45 42 42 ALA ALA A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 CYS 49 46 46 CYS CYS A . n A 1 50 GLU 50 47 47 GLU GLU A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 PHE 52 49 49 PHE PHE A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 GLN 57 54 54 GLN GLN A . n A 1 58 PRO 58 55 55 PRO PRO A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 ASN 62 59 59 ASN ASN A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 ARG 66 63 63 ARG ARG A . n A 1 67 ILE 67 64 64 ILE ILE A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 SER 69 66 66 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6RD 1 101 1 6RD 5MA A . C 3 EDO 1 102 1 EDO EDO A . D 4 HOH 1 201 95 HOH HOH A . D 4 HOH 2 202 42 HOH HOH A . D 4 HOH 3 203 37 HOH HOH A . D 4 HOH 4 204 19 HOH HOH A . D 4 HOH 5 205 55 HOH HOH A . D 4 HOH 6 206 88 HOH HOH A . D 4 HOH 7 207 65 HOH HOH A . D 4 HOH 8 208 113 HOH HOH A . D 4 HOH 9 209 74 HOH HOH A . D 4 HOH 10 210 101 HOH HOH A . D 4 HOH 11 211 53 HOH HOH A . D 4 HOH 12 212 17 HOH HOH A . D 4 HOH 13 213 47 HOH HOH A . D 4 HOH 14 214 6 HOH HOH A . D 4 HOH 15 215 58 HOH HOH A . D 4 HOH 16 216 3 HOH HOH A . D 4 HOH 17 217 116 HOH HOH A . D 4 HOH 18 218 96 HOH HOH A . D 4 HOH 19 219 48 HOH HOH A . D 4 HOH 20 220 22 HOH HOH A . D 4 HOH 21 221 29 HOH HOH A . D 4 HOH 22 222 63 HOH HOH A . D 4 HOH 23 223 29 HOH HOH A . D 4 HOH 24 224 21 HOH HOH A . D 4 HOH 25 225 12 HOH HOH A . D 4 HOH 26 226 14 HOH HOH A . D 4 HOH 27 227 18 HOH HOH A . D 4 HOH 28 228 94 HOH HOH A . D 4 HOH 29 229 13 HOH HOH A . D 4 HOH 30 230 128 HOH HOH A . D 4 HOH 31 231 26 HOH HOH A . D 4 HOH 32 232 33 HOH HOH A . D 4 HOH 33 233 130 HOH HOH A . D 4 HOH 34 234 2 HOH HOH A . D 4 HOH 35 235 1 HOH HOH A . D 4 HOH 36 236 4 HOH HOH A . D 4 HOH 37 237 126 HOH HOH A . D 4 HOH 38 238 32 HOH HOH A . D 4 HOH 39 239 34 HOH HOH A . D 4 HOH 40 240 46 HOH HOH A . D 4 HOH 41 241 27 HOH HOH A . D 4 HOH 42 242 127 HOH HOH A . D 4 HOH 43 243 19 HOH HOH A . D 4 HOH 44 244 11 HOH HOH A . D 4 HOH 45 245 16 HOH HOH A . D 4 HOH 46 246 49 HOH HOH A . D 4 HOH 47 247 5 HOH HOH A . D 4 HOH 48 248 66 HOH HOH A . D 4 HOH 49 249 9 HOH HOH A . D 4 HOH 50 250 41 HOH HOH A . D 4 HOH 51 251 61 HOH HOH A . D 4 HOH 52 252 1 HOH HOH A . D 4 HOH 53 253 44 HOH HOH A . D 4 HOH 54 254 38 HOH HOH A . D 4 HOH 55 255 91 HOH HOH A . D 4 HOH 56 256 56 HOH HOH A . D 4 HOH 57 257 79 HOH HOH A . D 4 HOH 58 258 31 HOH HOH A . D 4 HOH 59 259 84 HOH HOH A . D 4 HOH 60 260 51 HOH HOH A . D 4 HOH 61 261 87 HOH HOH A . D 4 HOH 62 262 52 HOH HOH A . D 4 HOH 63 263 37 HOH HOH A . D 4 HOH 64 264 107 HOH HOH A . D 4 HOH 65 265 46 HOH HOH A . D 4 HOH 66 266 9 HOH HOH A . D 4 HOH 67 267 59 HOH HOH A . D 4 HOH 68 268 35 HOH HOH A . D 4 HOH 69 269 93 HOH HOH A . D 4 HOH 70 270 99 HOH HOH A . D 4 HOH 71 271 5 HOH HOH A . D 4 HOH 72 272 97 HOH HOH A . D 4 HOH 73 273 10 HOH HOH A . D 4 HOH 74 274 23 HOH HOH A . D 4 HOH 75 275 31 HOH HOH A . D 4 HOH 76 276 60 HOH HOH A . D 4 HOH 77 277 15 HOH HOH A . D 4 HOH 78 278 123 HOH HOH A . D 4 HOH 79 279 8 HOH HOH A . D 4 HOH 80 280 36 HOH HOH A . D 4 HOH 81 281 10 HOH HOH A . D 4 HOH 82 282 64 HOH HOH A . D 4 HOH 83 283 3 HOH HOH A . D 4 HOH 84 284 68 HOH HOH A . D 4 HOH 85 285 50 HOH HOH A . D 4 HOH 86 286 7 HOH HOH A . D 4 HOH 87 287 125 HOH HOH A . D 4 HOH 88 288 47 HOH HOH A . D 4 HOH 89 289 129 HOH HOH A . D 4 HOH 90 290 100 HOH HOH A . D 4 HOH 91 291 109 HOH HOH A . D 4 HOH 92 292 62 HOH HOH A . D 4 HOH 93 293 49 HOH HOH A . D 4 HOH 94 294 114 HOH HOH A . D 4 HOH 95 295 73 HOH HOH A . D 4 HOH 96 296 81 HOH HOH A . D 4 HOH 97 297 25 HOH HOH A . D 4 HOH 98 298 111 HOH HOH A . D 4 HOH 99 299 104 HOH HOH A . D 4 HOH 100 300 92 HOH HOH A . D 4 HOH 101 301 118 HOH HOH A . D 4 HOH 102 302 54 HOH HOH A . D 4 HOH 103 303 7 HOH HOH A . D 4 HOH 104 304 83 HOH HOH A . D 4 HOH 105 305 102 HOH HOH A . D 4 HOH 106 306 122 HOH HOH A . D 4 HOH 107 307 77 HOH HOH A . D 4 HOH 108 308 3 HOH HOH A . D 4 HOH 109 309 85 HOH HOH A . D 4 HOH 110 310 105 HOH HOH A . D 4 HOH 111 311 124 HOH HOH A . D 4 HOH 112 312 120 HOH HOH A . D 4 HOH 113 313 86 HOH HOH A . D 4 HOH 114 314 78 HOH HOH A . D 4 HOH 115 315 117 HOH HOH A . D 4 HOH 116 316 73 HOH HOH A . D 4 HOH 117 317 108 HOH HOH A . D 4 HOH 118 318 82 HOH HOH A . D 4 HOH 119 319 79 HOH HOH A . D 4 HOH 120 320 2 HOH HOH A . D 4 HOH 121 321 131 HOH HOH A . D 4 HOH 122 322 57 HOH HOH A . D 4 HOH 123 323 89 HOH HOH A . D 4 HOH 124 324 115 HOH HOH A . D 4 HOH 125 325 70 HOH HOH A . D 4 HOH 126 326 90 HOH HOH A . D 4 HOH 127 327 82 HOH HOH A . D 4 HOH 128 328 86 HOH HOH A . D 4 HOH 129 329 2 HOH HOH A . D 4 HOH 130 330 121 HOH HOH A . D 4 HOH 131 331 4 HOH HOH A . D 4 HOH 132 332 21 HOH HOH A . D 4 HOH 133 333 43 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 8 ? CD ? A GLU 11 CD 2 1 Y 1 A GLU 8 ? OE1 ? A GLU 11 OE1 3 1 Y 1 A GLU 8 ? OE2 ? A GLU 11 OE2 4 1 Y 1 A ARG 24 ? CG ? A ARG 27 CG 5 1 Y 1 A ARG 24 ? CD ? A ARG 27 CD 6 1 Y 1 A ARG 24 ? NE ? A ARG 27 NE 7 1 Y 1 A ARG 24 ? CZ ? A ARG 27 CZ 8 1 Y 1 A ARG 24 ? NH1 ? A ARG 27 NH1 9 1 Y 1 A ARG 24 ? NH2 ? A ARG 27 NH2 10 1 Y 1 A LYS 36 ? NZ ? A LYS 39 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.entry_id 5L87 _cell.length_a 43.030 _cell.length_b 37.260 _cell.length_c 42.460 _cell.angle_alpha 90.00 _cell.angle_beta 117.89 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L87 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L87 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 SPG Buffer pH 9.0 25% PEG 1500 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Si _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87260 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.87260 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5L87 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.86 _reflns.d_resolution_low 90 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 203174 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.23 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5L87 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 44871 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.53 _refine.ls_d_res_high 0.87 _refine.ls_percent_reflns_obs 97.13 _refine.ls_R_factor_obs 0.13014 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12931 _refine.ls_R_factor_R_free 0.14538 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 2443 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.981 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.B_iso_mean 11.323 _refine.aniso_B[1][1] 0.03 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.02 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3ff5 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.015 _refine.pdbx_overall_ESU_R_Free 0.016 _refine.overall_SU_ML 0.010 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.367 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 485 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 656 _refine_hist.d_res_high 0.87 _refine_hist.d_res_low 37.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.032 0.020 ? 532 'X-RAY DIFFRACTION' ? r_bond_other_d 0.009 0.020 ? 533 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.391 2.078 ? 714 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.069 3.018 ? 1224 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.980 5.000 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.625 22.632 ? 19 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.155 15.000 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.743 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 78 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 566 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 118 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.096 0.735 ? 247 'X-RAY DIFFRACTION' ? r_mcbond_other 1.096 0.730 ? 246 'X-RAY DIFFRACTION' ? r_mcangle_it 1.252 1.100 ? 307 'X-RAY DIFFRACTION' ? r_mcangle_other 1.250 1.103 ? 308 'X-RAY DIFFRACTION' ? r_scbond_it 2.746 0.968 ? 282 'X-RAY DIFFRACTION' ? r_scbond_other 2.741 0.972 ? 283 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 3.213 1.378 ? 406 'X-RAY DIFFRACTION' ? r_long_range_B_refined 6.148 9.510 ? 775 'X-RAY DIFFRACTION' ? r_long_range_B_other 6.144 9.523 ? 776 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 9.879 3.000 ? 1058 'X-RAY DIFFRACTION' ? r_sphericity_free 50.391 5.000 ? 20 'X-RAY DIFFRACTION' ? r_sphericity_bonded 12.129 5.000 ? 1169 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.870 _refine_ls_shell.d_res_low 0.893 _refine_ls_shell.number_reflns_R_work 2431 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 70.25 _refine_ls_shell.R_factor_R_free 0.373 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 122 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5L87 _struct.title 'Targeting the PEX14-PEX5 interaction by small molecules provides novel therapeutic routes to treat trypanosomiases.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L87 _struct_keywords.text 'trypanosomiasis, glycosome, protein-protein interaction inhibitor, structure-based drug discovery, inhibitor, membrane protein' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8IEW2_TRYBB _struct_ref.pdbx_db_accession Q8IEW2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code HTHSEREKRVSNAVEFLLDSRVRRTPTSSKVHFLKSKGLSAEEICEAFTKVGQPKTLNEIKRILS _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5L87 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 69 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IEW2 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 84 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 66 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5L87 GLY A 1 ? UNP Q8IEW2 ? ? 'expression tag' -2 1 1 5L87 ALA A 2 ? UNP Q8IEW2 ? ? 'expression tag' -1 2 1 5L87 MET A 3 ? UNP Q8IEW2 ? ? 'expression tag' 0 3 1 5L87 TRP A 4 ? UNP Q8IEW2 ? ? 'expression tag' 1 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 120 ? 1 MORE 1 ? 1 'SSA (A^2)' 4060 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 8 ? ASP A 23 ? SER A 5 ASP A 20 1 ? 16 HELX_P HELX_P2 AA2 PRO A 30 ? LYS A 41 ? PRO A 27 LYS A 38 1 ? 12 HELX_P HELX_P3 AA3 SER A 44 ? VAL A 55 ? SER A 41 VAL A 52 1 ? 12 HELX_P HELX_P4 AA4 THR A 60 ? SER A 69 ? THR A 57 SER A 66 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6RD 101 ? 19 'binding site for residue 6RD A 101' AC2 Software A EDO 102 ? 8 'binding site for residue EDO A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 ASN A 16 ? ASN A 13 . ? 1_555 ? 2 AC1 19 GLU A 19 ? GLU A 16 . ? 1_555 ? 3 AC1 19 ASP A 23 ? ASP A 20 . ? 1_555 ? 4 AC1 19 ARG A 25 ? ARG A 22 . ? 1_555 ? 5 AC1 19 VAL A 26 ? VAL A 23 . ? 1_555 ? 6 AC1 19 HIS A 36 ? HIS A 33 . ? 2_656 ? 7 AC1 19 PHE A 37 ? PHE A 34 . ? 1_555 ? 8 AC1 19 LEU A 38 ? LEU A 35 . ? 1_555 ? 9 AC1 19 SER A 40 ? SER A 37 . ? 2_656 ? 10 AC1 19 LYS A 41 ? LYS A 38 . ? 1_555 ? 11 AC1 19 ARG A 66 ? ARG A 63 . ? 3_555 ? 12 AC1 19 HOH D . ? HOH A 235 . ? 1_555 ? 13 AC1 19 HOH D . ? HOH A 257 . ? 2_656 ? 14 AC1 19 HOH D . ? HOH A 257 . ? 1_555 ? 15 AC1 19 HOH D . ? HOH A 266 . ? 1_555 ? 16 AC1 19 HOH D . ? HOH A 325 . ? 2_656 ? 17 AC1 19 HOH D . ? HOH A 328 . ? 2_656 ? 18 AC1 19 HOH D . ? HOH A 329 . ? 3_555 ? 19 AC1 19 HOH D . ? HOH A 331 . ? 3_555 ? 20 AC2 8 LYS A 59 ? LYS A 56 . ? 1_555 ? 21 AC2 8 LYS A 59 ? LYS A 56 . ? 2_555 ? 22 AC2 8 THR A 60 ? THR A 57 . ? 2_555 ? 23 AC2 8 THR A 60 ? THR A 57 . ? 1_555 ? 24 AC2 8 HOH D . ? HOH A 214 . ? 2_555 ? 25 AC2 8 HOH D . ? HOH A 214 . ? 1_555 ? 26 AC2 8 HOH D . ? HOH A 255 . ? 1_555 ? 27 AC2 8 HOH D . ? HOH A 255 . ? 2_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 247 ? ? O A HOH 266 ? ? 0.87 2 1 O A HOH 239 ? ? O A HOH 260 ? ? 1.15 3 1 O A HOH 209 ? ? O A HOH 268 ? ? 1.15 4 1 O A HOH 254 ? ? O A HOH 288 ? ? 1.18 5 1 O A HOH 246 ? ? O A HOH 248 ? ? 1.28 6 1 O A HOH 223 ? ? O A HOH 269 ? ? 1.38 7 1 O A HOH 265 ? ? O A HOH 286 ? ? 1.47 8 1 O A HOH 267 ? ? O A HOH 293 ? ? 1.47 9 1 O A HOH 256 ? ? O A HOH 295 ? ? 1.66 10 1 O A HOH 230 ? ? O A HOH 263 ? ? 1.68 11 1 CG A GLU 8 ? ? O A HOH 308 ? ? 2.02 12 1 O A HOH 236 ? ? O A HOH 276 ? ? 2.08 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O1 A EDO 102 ? ? 1_555 O2 A EDO 102 ? ? 2_555 0.01 2 1 C1 A EDO 102 ? ? 1_555 C2 A EDO 102 ? ? 2_555 0.11 3 1 NBG A 6RD 101 ? ? 1_555 O A HOH 325 ? ? 2_656 0.15 4 1 N A SER 5 ? ? 1_555 O A HOH 292 ? ? 4_555 0.30 5 1 OAB A 6RD 101 ? ? 1_555 O A HOH 331 ? ? 3_555 0.31 6 1 H11 A EDO 102 ? ? 1_555 H22 A EDO 102 ? ? 2_555 0.41 7 1 H12 A EDO 102 ? ? 1_555 H21 A EDO 102 ? ? 2_555 0.45 8 1 O1 A EDO 102 ? ? 1_555 HO2 A EDO 102 ? ? 2_555 1.04 9 1 C1 A EDO 102 ? ? 1_555 H22 A EDO 102 ? ? 2_555 1.04 10 1 O2 A EDO 102 ? ? 1_555 HO1 A EDO 102 ? ? 2_555 1.06 11 1 C2 A EDO 102 ? ? 1_555 H12 A EDO 102 ? ? 2_555 1.07 12 1 C1 A EDO 102 ? ? 1_555 H21 A EDO 102 ? ? 2_555 1.20 13 1 C2 A EDO 102 ? ? 1_555 H11 A EDO 102 ? ? 2_555 1.21 14 1 CAW A 6RD 101 ? ? 1_555 O A HOH 331 ? ? 3_555 1.24 15 1 CAR A 6RD 101 ? ? 1_555 O A HOH 325 ? ? 2_656 1.44 16 1 C2 A EDO 102 ? ? 1_555 C2 A EDO 102 ? ? 2_555 1.45 17 1 C1 A EDO 102 ? ? 1_555 O2 A EDO 102 ? ? 2_555 1.45 18 1 CA A SER 5 ? ? 1_555 O A HOH 292 ? ? 4_555 1.46 19 1 CAP A 6RD 101 ? ? 1_555 O A HOH 325 ? ? 2_656 1.47 20 1 O1 A EDO 102 ? ? 1_555 C2 A EDO 102 ? ? 2_555 1.49 21 1 CAS A 6RD 101 ? ? 1_555 O A HOH 325 ? ? 2_656 1.53 22 1 C1 A EDO 102 ? ? 1_555 C1 A EDO 102 ? ? 2_555 1.54 23 1 O A HOH 204 ? ? 1_555 O A HOH 238 ? ? 4_545 1.59 24 1 O A HOH 229 ? ? 1_555 O A HOH 284 ? ? 3_545 1.95 25 1 O A HOH 288 ? ? 1_555 O A HOH 288 ? ? 2_656 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 16 ? ? OE2 A GLU 16 ? ? 1.179 1.252 -0.073 0.011 N 2 1 CB A SER 21 ? ? OG A SER 21 ? ? 1.511 1.418 0.093 0.013 N 3 1 CB A SER 30 ? ? OG A SER 30 ? ? 1.302 1.418 -0.116 0.013 N 4 1 CE A LYS 31 ? ? NZ A LYS 31 ? ? 1.695 1.486 0.209 0.025 N 5 1 CE A LYS 51 ? ? NZ A LYS 51 ? ? 1.309 1.486 -0.177 0.025 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH2 A ARG 7 ? ? 117.10 120.30 -3.20 0.50 N 2 1 NE A ARG 22 ? ? CZ A ARG 22 ? ? NH2 A ARG 22 ? ? 117.03 120.30 -3.27 0.50 N 3 1 CD A LYS 51 ? ? CE A LYS 51 ? ? NZ A LYS 51 ? ? 126.78 111.70 15.08 2.30 N 4 1 NE A ARG 63 ? ? CZ A ARG 63 ? ? NH1 A ARG 63 ? ? 114.71 120.30 -5.59 0.50 N 5 1 NE A ARG 63 ? ? CZ A ARG 63 ? ? NH2 A ARG 63 ? ? 126.61 120.30 6.31 0.50 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 203 ? D HOH . 2 1 A HOH 257 ? D HOH . 3 1 A HOH 300 ? D HOH . 4 1 A HOH 333 ? D HOH . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 333 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.91 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A ALA -1 ? A ALA 2 3 1 Y 1 A MET 0 ? A MET 3 4 1 Y 1 A TRP 1 ? A TRP 4 5 1 Y 1 A HIS 2 ? A HIS 5 6 1 Y 1 A THR 3 ? A THR 6 7 1 Y 1 A HIS 4 ? A HIS 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6RD CAH C Y N 1 6RD CAG C Y N 2 6RD CAJ C Y N 3 6RD CBC C Y N 4 6RD CAI C Y N 5 6RD CAC C Y N 6 6RD CAE C Y N 7 6RD CAL C Y N 8 6RD CBE C Y N 9 6RD CAX C Y N 10 6RD CAQ C N N 11 6RD NAU N N N 12 6RD CAW C N N 13 6RD OAB O N N 14 6RD CBA C Y N 15 6RD CAZ C Y N 16 6RD CAS C N N 17 6RD NAT N Y N 18 6RD NBH N Y N 19 6RD CAA C N N 20 6RD CBB C Y N 21 6RD CAO C N N 22 6RD CAP C N N 23 6RD NBG N N N 24 6RD CAR C N N 25 6RD CAY C Y N 26 6RD CBF C Y N 27 6RD CAM C Y N 28 6RD CAF C Y N 29 6RD CAD C Y N 30 6RD CAK C Y N 31 6RD CBD C Y N 32 6RD NAV N Y N 33 6RD CAN C Y N 34 6RD HAI H N N 35 6RD HAH H N N 36 6RD HAK H N N 37 6RD HAJ H N N 38 6RD HAD H N N 39 6RD HAF H N N 40 6RD HAM H N N 41 6RD HAT H N N 42 6RD HAU H N N 43 6RD HBH H N N 44 6RD HAX H N N 45 6RD HAY H N N 46 6RD HAB H N N 47 6RD HAC H N N 48 6RD HAA H N N 49 6RD HAP H N N 50 6RD HAQ H N N 51 6RD HAS H N N 52 6RD HAR H N N 53 6RD HAV H N N 54 6RD HAW H N N 55 6RD HAN H N N 56 6RD HAG H N N 57 6RD HAE H N N 58 6RD HAL H N N 59 6RD HBI H N N 60 6RD HAO H N N 61 ALA N N N N 62 ALA CA C N S 63 ALA C C N N 64 ALA O O N N 65 ALA CB C N N 66 ALA OXT O N N 67 ALA H H N N 68 ALA H2 H N N 69 ALA HA H N N 70 ALA HB1 H N N 71 ALA HB2 H N N 72 ALA HB3 H N N 73 ALA HXT H N N 74 ARG N N N N 75 ARG CA C N S 76 ARG C C N N 77 ARG O O N N 78 ARG CB C N N 79 ARG CG C N N 80 ARG CD C N N 81 ARG NE N N N 82 ARG CZ C N N 83 ARG NH1 N N N 84 ARG NH2 N N N 85 ARG OXT O N N 86 ARG H H N N 87 ARG H2 H N N 88 ARG HA H N N 89 ARG HB2 H N N 90 ARG HB3 H N N 91 ARG HG2 H N N 92 ARG HG3 H N N 93 ARG HD2 H N N 94 ARG HD3 H N N 95 ARG HE H N N 96 ARG HH11 H N N 97 ARG HH12 H N N 98 ARG HH21 H N N 99 ARG HH22 H N N 100 ARG HXT H N N 101 ASN N N N N 102 ASN CA C N S 103 ASN C C N N 104 ASN O O N N 105 ASN CB C N N 106 ASN CG C N N 107 ASN OD1 O N N 108 ASN ND2 N N N 109 ASN OXT O N N 110 ASN H H N N 111 ASN H2 H N N 112 ASN HA H N N 113 ASN HB2 H N N 114 ASN HB3 H N N 115 ASN HD21 H N N 116 ASN HD22 H N N 117 ASN HXT H N N 118 ASP N N N N 119 ASP CA C N S 120 ASP C C N N 121 ASP O O N N 122 ASP CB C N N 123 ASP CG C N N 124 ASP OD1 O N N 125 ASP OD2 O N N 126 ASP OXT O N N 127 ASP H H N N 128 ASP H2 H N N 129 ASP HA H N N 130 ASP HB2 H N N 131 ASP HB3 H N N 132 ASP HD2 H N N 133 ASP HXT H N N 134 CYS N N N N 135 CYS CA C N R 136 CYS C C N N 137 CYS O O N N 138 CYS CB C N N 139 CYS SG S N N 140 CYS OXT O N N 141 CYS H H N N 142 CYS H2 H N N 143 CYS HA H N N 144 CYS HB2 H N N 145 CYS HB3 H N N 146 CYS HG H N N 147 CYS HXT H N N 148 EDO C1 C N N 149 EDO O1 O N N 150 EDO C2 C N N 151 EDO O2 O N N 152 EDO H11 H N N 153 EDO H12 H N N 154 EDO HO1 H N N 155 EDO H21 H N N 156 EDO H22 H N N 157 EDO HO2 H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 PHE N N N N 321 PHE CA C N S 322 PHE C C N N 323 PHE O O N N 324 PHE CB C N N 325 PHE CG C Y N 326 PHE CD1 C Y N 327 PHE CD2 C Y N 328 PHE CE1 C Y N 329 PHE CE2 C Y N 330 PHE CZ C Y N 331 PHE OXT O N N 332 PHE H H N N 333 PHE H2 H N N 334 PHE HA H N N 335 PHE HB2 H N N 336 PHE HB3 H N N 337 PHE HD1 H N N 338 PHE HD2 H N N 339 PHE HE1 H N N 340 PHE HE2 H N N 341 PHE HZ H N N 342 PHE HXT H N N 343 PRO N N N N 344 PRO CA C N S 345 PRO C C N N 346 PRO O O N N 347 PRO CB C N N 348 PRO CG C N N 349 PRO CD C N N 350 PRO OXT O N N 351 PRO H H N N 352 PRO HA H N N 353 PRO HB2 H N N 354 PRO HB3 H N N 355 PRO HG2 H N N 356 PRO HG3 H N N 357 PRO HD2 H N N 358 PRO HD3 H N N 359 PRO HXT H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 THR N N N N 375 THR CA C N S 376 THR C C N N 377 THR O O N N 378 THR CB C N R 379 THR OG1 O N N 380 THR CG2 C N N 381 THR OXT O N N 382 THR H H N N 383 THR H2 H N N 384 THR HA H N N 385 THR HB H N N 386 THR HG1 H N N 387 THR HG21 H N N 388 THR HG22 H N N 389 THR HG23 H N N 390 THR HXT H N N 391 TRP N N N N 392 TRP CA C N S 393 TRP C C N N 394 TRP O O N N 395 TRP CB C N N 396 TRP CG C Y N 397 TRP CD1 C Y N 398 TRP CD2 C Y N 399 TRP NE1 N Y N 400 TRP CE2 C Y N 401 TRP CE3 C Y N 402 TRP CZ2 C Y N 403 TRP CZ3 C Y N 404 TRP CH2 C Y N 405 TRP OXT O N N 406 TRP H H N N 407 TRP H2 H N N 408 TRP HA H N N 409 TRP HB2 H N N 410 TRP HB3 H N N 411 TRP HD1 H N N 412 TRP HE1 H N N 413 TRP HE3 H N N 414 TRP HZ2 H N N 415 TRP HZ3 H N N 416 TRP HH2 H N N 417 TRP HXT H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6RD CAA NBH sing N N 1 6RD CAJ CAG doub Y N 2 6RD CAJ CBC sing Y N 3 6RD CAI CBC doub Y N 4 6RD CAI CAC sing Y N 5 6RD CAG CAH sing Y N 6 6RD CBC CBE sing Y N 7 6RD CAC CAE doub Y N 8 6RD CAH CAX doub Y N 9 6RD NAT NBH sing Y N 10 6RD NAT CBA doub Y N 11 6RD NBH CBB sing Y N 12 6RD CBE CAX sing Y N 13 6RD CBE CAL doub Y N 14 6RD CAE CAL sing Y N 15 6RD CAX CAQ sing N N 16 6RD NAU CAQ sing N N 17 6RD NAU CAW sing N N 18 6RD CBA CAW sing N N 19 6RD CBA CAZ sing Y N 20 6RD CBB CAO sing N N 21 6RD CBB CAZ doub Y N 22 6RD CAW OAB doub N N 23 6RD CAO CAP sing N N 24 6RD CAZ CAS sing N N 25 6RD CAP NBG sing N N 26 6RD CAS NBG sing N N 27 6RD NBG CAR sing N N 28 6RD CAM CAF doub Y N 29 6RD CAM CBF sing Y N 30 6RD CAF CAD sing Y N 31 6RD CAR CAY sing N N 32 6RD CAD CAK doub Y N 33 6RD CBF CAY sing Y N 34 6RD CBF CBD doub Y N 35 6RD CAY CAN doub Y N 36 6RD CAK CBD sing Y N 37 6RD CBD NAV sing Y N 38 6RD CAN NAV sing Y N 39 6RD CAH HAI sing N N 40 6RD CAG HAH sing N N 41 6RD CAJ HAK sing N N 42 6RD CAI HAJ sing N N 43 6RD CAC HAD sing N N 44 6RD CAE HAF sing N N 45 6RD CAL HAM sing N N 46 6RD CAQ HAT sing N N 47 6RD CAQ HAU sing N N 48 6RD NAU HBH sing N N 49 6RD CAS HAX sing N N 50 6RD CAS HAY sing N N 51 6RD CAA HAB sing N N 52 6RD CAA HAC sing N N 53 6RD CAA HAA sing N N 54 6RD CAO HAP sing N N 55 6RD CAO HAQ sing N N 56 6RD CAP HAS sing N N 57 6RD CAP HAR sing N N 58 6RD CAR HAV sing N N 59 6RD CAR HAW sing N N 60 6RD CAM HAN sing N N 61 6RD CAF HAG sing N N 62 6RD CAD HAE sing N N 63 6RD CAK HAL sing N N 64 6RD NAV HBI sing N N 65 6RD CAN HAO sing N N 66 ALA N CA sing N N 67 ALA N H sing N N 68 ALA N H2 sing N N 69 ALA CA C sing N N 70 ALA CA CB sing N N 71 ALA CA HA sing N N 72 ALA C O doub N N 73 ALA C OXT sing N N 74 ALA CB HB1 sing N N 75 ALA CB HB2 sing N N 76 ALA CB HB3 sing N N 77 ALA OXT HXT sing N N 78 ARG N CA sing N N 79 ARG N H sing N N 80 ARG N H2 sing N N 81 ARG CA C sing N N 82 ARG CA CB sing N N 83 ARG CA HA sing N N 84 ARG C O doub N N 85 ARG C OXT sing N N 86 ARG CB CG sing N N 87 ARG CB HB2 sing N N 88 ARG CB HB3 sing N N 89 ARG CG CD sing N N 90 ARG CG HG2 sing N N 91 ARG CG HG3 sing N N 92 ARG CD NE sing N N 93 ARG CD HD2 sing N N 94 ARG CD HD3 sing N N 95 ARG NE CZ sing N N 96 ARG NE HE sing N N 97 ARG CZ NH1 sing N N 98 ARG CZ NH2 doub N N 99 ARG NH1 HH11 sing N N 100 ARG NH1 HH12 sing N N 101 ARG NH2 HH21 sing N N 102 ARG NH2 HH22 sing N N 103 ARG OXT HXT sing N N 104 ASN N CA sing N N 105 ASN N H sing N N 106 ASN N H2 sing N N 107 ASN CA C sing N N 108 ASN CA CB sing N N 109 ASN CA HA sing N N 110 ASN C O doub N N 111 ASN C OXT sing N N 112 ASN CB CG sing N N 113 ASN CB HB2 sing N N 114 ASN CB HB3 sing N N 115 ASN CG OD1 doub N N 116 ASN CG ND2 sing N N 117 ASN ND2 HD21 sing N N 118 ASN ND2 HD22 sing N N 119 ASN OXT HXT sing N N 120 ASP N CA sing N N 121 ASP N H sing N N 122 ASP N H2 sing N N 123 ASP CA C sing N N 124 ASP CA CB sing N N 125 ASP CA HA sing N N 126 ASP C O doub N N 127 ASP C OXT sing N N 128 ASP CB CG sing N N 129 ASP CB HB2 sing N N 130 ASP CB HB3 sing N N 131 ASP CG OD1 doub N N 132 ASP CG OD2 sing N N 133 ASP OD2 HD2 sing N N 134 ASP OXT HXT sing N N 135 CYS N CA sing N N 136 CYS N H sing N N 137 CYS N H2 sing N N 138 CYS CA C sing N N 139 CYS CA CB sing N N 140 CYS CA HA sing N N 141 CYS C O doub N N 142 CYS C OXT sing N N 143 CYS CB SG sing N N 144 CYS CB HB2 sing N N 145 CYS CB HB3 sing N N 146 CYS SG HG sing N N 147 CYS OXT HXT sing N N 148 EDO C1 O1 sing N N 149 EDO C1 C2 sing N N 150 EDO C1 H11 sing N N 151 EDO C1 H12 sing N N 152 EDO O1 HO1 sing N N 153 EDO C2 O2 sing N N 154 EDO C2 H21 sing N N 155 EDO C2 H22 sing N N 156 EDO O2 HO2 sing N N 157 GLN N CA sing N N 158 GLN N H sing N N 159 GLN N H2 sing N N 160 GLN CA C sing N N 161 GLN CA CB sing N N 162 GLN CA HA sing N N 163 GLN C O doub N N 164 GLN C OXT sing N N 165 GLN CB CG sing N N 166 GLN CB HB2 sing N N 167 GLN CB HB3 sing N N 168 GLN CG CD sing N N 169 GLN CG HG2 sing N N 170 GLN CG HG3 sing N N 171 GLN CD OE1 doub N N 172 GLN CD NE2 sing N N 173 GLN NE2 HE21 sing N N 174 GLN NE2 HE22 sing N N 175 GLN OXT HXT sing N N 176 GLU N CA sing N N 177 GLU N H sing N N 178 GLU N H2 sing N N 179 GLU CA C sing N N 180 GLU CA CB sing N N 181 GLU CA HA sing N N 182 GLU C O doub N N 183 GLU C OXT sing N N 184 GLU CB CG sing N N 185 GLU CB HB2 sing N N 186 GLU CB HB3 sing N N 187 GLU CG CD sing N N 188 GLU CG HG2 sing N N 189 GLU CG HG3 sing N N 190 GLU CD OE1 doub N N 191 GLU CD OE2 sing N N 192 GLU OE2 HE2 sing N N 193 GLU OXT HXT sing N N 194 GLY N CA sing N N 195 GLY N H sing N N 196 GLY N H2 sing N N 197 GLY CA C sing N N 198 GLY CA HA2 sing N N 199 GLY CA HA3 sing N N 200 GLY C O doub N N 201 GLY C OXT sing N N 202 GLY OXT HXT sing N N 203 HIS N CA sing N N 204 HIS N H sing N N 205 HIS N H2 sing N N 206 HIS CA C sing N N 207 HIS CA CB sing N N 208 HIS CA HA sing N N 209 HIS C O doub N N 210 HIS C OXT sing N N 211 HIS CB CG sing N N 212 HIS CB HB2 sing N N 213 HIS CB HB3 sing N N 214 HIS CG ND1 sing Y N 215 HIS CG CD2 doub Y N 216 HIS ND1 CE1 doub Y N 217 HIS ND1 HD1 sing N N 218 HIS CD2 NE2 sing Y N 219 HIS CD2 HD2 sing N N 220 HIS CE1 NE2 sing Y N 221 HIS CE1 HE1 sing N N 222 HIS NE2 HE2 sing N N 223 HIS OXT HXT sing N N 224 HOH O H1 sing N N 225 HOH O H2 sing N N 226 ILE N CA sing N N 227 ILE N H sing N N 228 ILE N H2 sing N N 229 ILE CA C sing N N 230 ILE CA CB sing N N 231 ILE CA HA sing N N 232 ILE C O doub N N 233 ILE C OXT sing N N 234 ILE CB CG1 sing N N 235 ILE CB CG2 sing N N 236 ILE CB HB sing N N 237 ILE CG1 CD1 sing N N 238 ILE CG1 HG12 sing N N 239 ILE CG1 HG13 sing N N 240 ILE CG2 HG21 sing N N 241 ILE CG2 HG22 sing N N 242 ILE CG2 HG23 sing N N 243 ILE CD1 HD11 sing N N 244 ILE CD1 HD12 sing N N 245 ILE CD1 HD13 sing N N 246 ILE OXT HXT sing N N 247 LEU N CA sing N N 248 LEU N H sing N N 249 LEU N H2 sing N N 250 LEU CA C sing N N 251 LEU CA CB sing N N 252 LEU CA HA sing N N 253 LEU C O doub N N 254 LEU C OXT sing N N 255 LEU CB CG sing N N 256 LEU CB HB2 sing N N 257 LEU CB HB3 sing N N 258 LEU CG CD1 sing N N 259 LEU CG CD2 sing N N 260 LEU CG HG sing N N 261 LEU CD1 HD11 sing N N 262 LEU CD1 HD12 sing N N 263 LEU CD1 HD13 sing N N 264 LEU CD2 HD21 sing N N 265 LEU CD2 HD22 sing N N 266 LEU CD2 HD23 sing N N 267 LEU OXT HXT sing N N 268 LYS N CA sing N N 269 LYS N H sing N N 270 LYS N H2 sing N N 271 LYS CA C sing N N 272 LYS CA CB sing N N 273 LYS CA HA sing N N 274 LYS C O doub N N 275 LYS C OXT sing N N 276 LYS CB CG sing N N 277 LYS CB HB2 sing N N 278 LYS CB HB3 sing N N 279 LYS CG CD sing N N 280 LYS CG HG2 sing N N 281 LYS CG HG3 sing N N 282 LYS CD CE sing N N 283 LYS CD HD2 sing N N 284 LYS CD HD3 sing N N 285 LYS CE NZ sing N N 286 LYS CE HE2 sing N N 287 LYS CE HE3 sing N N 288 LYS NZ HZ1 sing N N 289 LYS NZ HZ2 sing N N 290 LYS NZ HZ3 sing N N 291 LYS OXT HXT sing N N 292 MET N CA sing N N 293 MET N H sing N N 294 MET N H2 sing N N 295 MET CA C sing N N 296 MET CA CB sing N N 297 MET CA HA sing N N 298 MET C O doub N N 299 MET C OXT sing N N 300 MET CB CG sing N N 301 MET CB HB2 sing N N 302 MET CB HB3 sing N N 303 MET CG SD sing N N 304 MET CG HG2 sing N N 305 MET CG HG3 sing N N 306 MET SD CE sing N N 307 MET CE HE1 sing N N 308 MET CE HE2 sing N N 309 MET CE HE3 sing N N 310 MET OXT HXT sing N N 311 PHE N CA sing N N 312 PHE N H sing N N 313 PHE N H2 sing N N 314 PHE CA C sing N N 315 PHE CA CB sing N N 316 PHE CA HA sing N N 317 PHE C O doub N N 318 PHE C OXT sing N N 319 PHE CB CG sing N N 320 PHE CB HB2 sing N N 321 PHE CB HB3 sing N N 322 PHE CG CD1 doub Y N 323 PHE CG CD2 sing Y N 324 PHE CD1 CE1 sing Y N 325 PHE CD1 HD1 sing N N 326 PHE CD2 CE2 doub Y N 327 PHE CD2 HD2 sing N N 328 PHE CE1 CZ doub Y N 329 PHE CE1 HE1 sing N N 330 PHE CE2 CZ sing Y N 331 PHE CE2 HE2 sing N N 332 PHE CZ HZ sing N N 333 PHE OXT HXT sing N N 334 PRO N CA sing N N 335 PRO N CD sing N N 336 PRO N H sing N N 337 PRO CA C sing N N 338 PRO CA CB sing N N 339 PRO CA HA sing N N 340 PRO C O doub N N 341 PRO C OXT sing N N 342 PRO CB CG sing N N 343 PRO CB HB2 sing N N 344 PRO CB HB3 sing N N 345 PRO CG CD sing N N 346 PRO CG HG2 sing N N 347 PRO CG HG3 sing N N 348 PRO CD HD2 sing N N 349 PRO CD HD3 sing N N 350 PRO OXT HXT sing N N 351 SER N CA sing N N 352 SER N H sing N N 353 SER N H2 sing N N 354 SER CA C sing N N 355 SER CA CB sing N N 356 SER CA HA sing N N 357 SER C O doub N N 358 SER C OXT sing N N 359 SER CB OG sing N N 360 SER CB HB2 sing N N 361 SER CB HB3 sing N N 362 SER OG HG sing N N 363 SER OXT HXT sing N N 364 THR N CA sing N N 365 THR N H sing N N 366 THR N H2 sing N N 367 THR CA C sing N N 368 THR CA CB sing N N 369 THR CA HA sing N N 370 THR C O doub N N 371 THR C OXT sing N N 372 THR CB OG1 sing N N 373 THR CB CG2 sing N N 374 THR CB HB sing N N 375 THR OG1 HG1 sing N N 376 THR CG2 HG21 sing N N 377 THR CG2 HG22 sing N N 378 THR CG2 HG23 sing N N 379 THR OXT HXT sing N N 380 TRP N CA sing N N 381 TRP N H sing N N 382 TRP N H2 sing N N 383 TRP CA C sing N N 384 TRP CA CB sing N N 385 TRP CA HA sing N N 386 TRP C O doub N N 387 TRP C OXT sing N N 388 TRP CB CG sing N N 389 TRP CB HB2 sing N N 390 TRP CB HB3 sing N N 391 TRP CG CD1 doub Y N 392 TRP CG CD2 sing Y N 393 TRP CD1 NE1 sing Y N 394 TRP CD1 HD1 sing N N 395 TRP CD2 CE2 doub Y N 396 TRP CD2 CE3 sing Y N 397 TRP NE1 CE2 sing Y N 398 TRP NE1 HE1 sing N N 399 TRP CE2 CZ2 sing Y N 400 TRP CE3 CZ3 doub Y N 401 TRP CE3 HE3 sing N N 402 TRP CZ2 CH2 doub Y N 403 TRP CZ2 HZ2 sing N N 404 TRP CZ3 CH2 sing Y N 405 TRP CZ3 HZ3 sing N N 406 TRP CH2 HH2 sing N N 407 TRP OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'FOR1905 ER178/4-1' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FF5 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5L87 _atom_sites.fract_transf_matrix[1][1] 0.023240 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012302 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026838 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026648 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_