HEADER TRANSFERASE 08-JUN-16 5L8K TITLE AURORA-A KINASE DOMAIN IN COMPLEX WITH VNAR-D01 (CRYSTAL FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AURORA 2,AURORA/IPL1-RELATED KINASE 1,HARK1,BREAST TUMOR- COMPND 5 AMPLIFIED KINASE,SERINE/THREONINE-PROTEIN KINASE 15,SERINE/THREONINE- COMPND 6 PROTEIN KINASE 6,SERINE/THREONINE-PROTEIN KINASE AURORA-A; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NEW ANTIGEN RECEPTOR VARIABLE DOMAIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30TEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ORECTOLOBUS MACULATUS; SOURCE 13 ORGANISM_COMMON: SPOTTED WOBBEGONG; SOURCE 14 ORGANISM_TAXID: 168098; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET26B(+) KEYWDS KINASE, VNAR, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.BURGESS,R.BAYLISS REVDAT 3 10-JAN-24 5L8K 1 ATOM REVDAT 2 27-JUL-16 5L8K 1 JRNL REVDAT 1 20-JUL-16 5L8K 0 JRNL AUTH S.G.BURGESS,A.OLEKSY,T.CAVAZZA,M.W.RICHARDS,I.VERNOS, JRNL AUTH 2 D.MATTHEWS,R.BAYLISS JRNL TITL ALLOSTERIC INHIBITION OF AURORA-A KINASE BY A SYNTHETIC VNAR JRNL TITL 2 DOMAIN. JRNL REF OPEN BIOLOGY V. 6 2016 JRNL REFN ESSN 2046-2441 JRNL PMID 27411893 JRNL DOI 10.1098/RSOB.160089 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 41890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6730 - 4.4134 0.98 2881 132 0.1814 0.2306 REMARK 3 2 4.4134 - 3.5034 1.00 2772 136 0.1462 0.1918 REMARK 3 3 3.5034 - 3.0607 0.97 2672 126 0.1799 0.2087 REMARK 3 4 3.0607 - 2.7809 1.00 2728 150 0.1924 0.2294 REMARK 3 5 2.7809 - 2.5816 1.00 2705 153 0.1983 0.2777 REMARK 3 6 2.5816 - 2.4294 1.00 2699 125 0.2010 0.2158 REMARK 3 7 2.4294 - 2.3077 1.00 2693 148 0.1969 0.2343 REMARK 3 8 2.3077 - 2.2073 0.97 2605 138 0.1919 0.2576 REMARK 3 9 2.2073 - 2.1223 0.99 2679 136 0.2016 0.2393 REMARK 3 10 2.1223 - 2.0491 0.99 2689 137 0.2086 0.2531 REMARK 3 11 2.0491 - 1.9850 0.99 2646 133 0.2186 0.2707 REMARK 3 12 1.9850 - 1.9282 0.98 2623 143 0.2465 0.2959 REMARK 3 13 1.9282 - 1.8775 0.94 2519 126 0.2850 0.3424 REMARK 3 14 1.8775 - 1.8317 0.93 2482 129 0.3282 0.3561 REMARK 3 15 1.8317 - 1.7900 0.91 2455 130 0.3786 0.4009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3021 REMARK 3 ANGLE : 1.227 4094 REMARK 3 CHIRALITY : 0.050 463 REMARK 3 PLANARITY : 0.004 514 REMARK 3 DIHEDRAL : 13.864 1083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 46.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CEG, 2COQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 MET A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 ALA A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 GLY B 106 REMARK 465 ALA B 107 REMARK 465 ALA B 108 REMARK 465 ALA B 109 REMARK 465 LEU B 110 REMARK 465 GLU B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 220 NE CZ NH1 NH2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 HIS A 280 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 282 CG CD REMARK 470 SER A 284 OG REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 304 NE CZ NH1 NH2 REMARK 470 MET A 305 CG SD CE REMARK 470 GLU A 308 CD OE1 OE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 389 CE NZ REMARK 470 ASN A 392 CG OD1 ND2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 ARG B 75 CZ NH1 NH2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLY B 105 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2P TPO A 288 O HOH A 601 1.45 REMARK 500 O HOH A 799 O HOH A 807 1.98 REMARK 500 O HOH A 710 O HOH A 765 2.04 REMARK 500 O THR A 292 O HOH A 602 2.09 REMARK 500 OE2 GLU A 269 O HOH A 603 2.14 REMARK 500 OG SER A 266 O HOH A 604 2.15 REMARK 500 O HOH A 676 O HOH A 733 2.17 REMARK 500 O HOH A 678 O HOH B 325 2.17 REMARK 500 O HOH A 727 O HOH A 793 2.19 REMARK 500 O4 SO4 A 502 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 359 O HOH B 359 2555 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -159.44 -127.74 REMARK 500 SER A 226 -47.68 70.75 REMARK 500 VAL A 279 -47.86 130.96 REMARK 500 ASP A 307 -155.48 -146.65 REMARK 500 LEU A 364 47.45 -94.10 REMARK 500 SER A 391 -178.25 -64.15 REMARK 500 SER B 34 61.40 -157.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 808 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 11.04 ANGSTROMS REMARK 525 HOH B 368 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 369 DISTANCE = 7.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L8L RELATED DB: PDB REMARK 900 DIFFERENT SPACE GROUP OF THE SAME PROTEIN-PROTEIN COMPLEX DBREF 5L8K A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 5L8K B 2 104 UNP Q8JJ25 Q8JJ25_9CHON 1 108 SEQADV 5L8K GLY A 119 UNP O14965 EXPRESSION TAG SEQADV 5L8K ALA A 120 UNP O14965 EXPRESSION TAG SEQADV 5L8K MET A 121 UNP O14965 EXPRESSION TAG SEQADV 5L8K ALA A 290 UNP O14965 CYS 290 ENGINEERED MUTATION SEQADV 5L8K ALA A 393 UNP O14965 CYS 393 ENGINEERED MUTATION SEQADV 5L8K MET B 1 UNP Q8JJ25 INITIATING METHIONINE SEQADV 5L8K ILE B 87 UNP Q8JJ25 TYR 86 CONFLICT SEQADV 5L8K ASP B 88 UNP Q8JJ25 ARG 87 CONFLICT SEQADV 5L8K SER B 89 UNP Q8JJ25 ARG 88 ENGINEERED MUTATION SEQADV 5L8K B UNP Q8JJ25 ALA 90 DELETION SEQADV 5L8K B UNP Q8JJ25 PHE 91 DELETION SEQADV 5L8K B UNP Q8JJ25 ASN 92 DELETION SEQADV 5L8K B UNP Q8JJ25 THR 93 DELETION SEQADV 5L8K B UNP Q8JJ25 GLY 94 DELETION SEQADV 5L8K TRP B 91 UNP Q8JJ25 VAL 95 CONFLICT SEQADV 5L8K LEU B 92 UNP Q8JJ25 GLY 96 CONFLICT SEQADV 5L8K SER B 93 UNP Q8JJ25 TYR 97 CONFLICT SEQADV 5L8K ARG B 94 UNP Q8JJ25 LYS 98 CONFLICT SEQADV 5L8K GLY B 105 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K GLY B 106 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K ALA B 107 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K ALA B 108 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K ALA B 109 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K LEU B 110 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K GLU B 111 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 112 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 113 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 114 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 115 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 116 UNP Q8JJ25 EXPRESSION TAG SEQADV 5L8K HIS B 117 UNP Q8JJ25 EXPRESSION TAG SEQRES 1 A 285 GLY ALA MET GLU SER LYS LYS ARG GLN TRP ALA LEU GLU SEQRES 2 A 285 ASP PHE GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE SEQRES 3 A 285 GLY ASN VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE SEQRES 4 A 285 ILE LEU ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU SEQRES 5 A 285 LYS ALA GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU SEQRES 6 A 285 ILE GLN SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU SEQRES 7 A 285 TYR GLY TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE SEQRES 8 A 285 LEU GLU TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU SEQRES 9 A 285 GLN LYS LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR SEQRES 10 A 285 TYR ILE THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SEQRES 11 A 285 SER LYS ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN SEQRES 12 A 285 LEU LEU LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP SEQRES 13 A 285 PHE GLY TRP SER VAL HIS ALA PRO SER SER ARG ARG THR SEQRES 14 A 285 TPO LEU ALA GLY THR LEU ASP TYR LEU PRO PRO GLU MET SEQRES 15 A 285 ILE GLU GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SEQRES 16 A 285 SER LEU GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS SEQRES 17 A 285 PRO PRO PHE GLU ALA ASN THR TYR GLN GLU THR TYR LYS SEQRES 18 A 285 ARG ILE SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL SEQRES 19 A 285 THR GLU GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS SEQRES 20 A 285 HIS ASN PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU SEQRES 21 A 285 GLU HIS PRO TRP ILE THR ALA ASN SER SER LYS PRO SER SEQRES 22 A 285 ASN ALA GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 117 MET ALA ARG VAL ASP GLN THR PRO ARG ILE ALA THR LYS SEQRES 2 B 117 GLU THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU ARG SEQRES 3 B 117 ASP THR ALA CYS ALA LEU ASP SER THR ASN TRP TYR ARG SEQRES 4 B 117 THR LYS LEU GLY SER THR LYS GLU GLN THR ILE SER ILE SEQRES 5 B 117 GLY GLY ARG TYR SER GLU THR VAL ASP GLU GLY SER ASN SEQRES 6 B 117 SER ALA SER LEU THR ILE ARG ASP LEU ARG VAL GLU ASP SEQRES 7 B 117 SER GLY THR TYR LYS CYS LYS ALA ILE ASP SER CYS TRP SEQRES 8 B 117 LEU SER ARG GLU GLY ALA GLY THR VAL LEU THR VAL LYS SEQRES 9 B 117 GLY GLY ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 5L8K TPO A 288 THR MODIFIED RESIDUE HET TPO A 288 11 HET ADP A 501 27 HET SO4 A 502 5 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET SO4 B 201 5 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 EDO 10(C2 H6 O2) FORMUL 16 HOH *280(H2 O) HELIX 1 AA1 ALA A 129 GLU A 131 5 3 HELIX 2 AA2 LYS A 166 ALA A 172 1 7 HELIX 3 AA3 VAL A 174 SER A 186 1 13 HELIX 4 AA4 THR A 217 SER A 226 1 10 HELIX 5 AA5 ASP A 229 SER A 249 1 21 HELIX 6 AA6 LYS A 258 GLU A 260 5 3 HELIX 7 AA7 PRO A 297 GLU A 302 1 6 HELIX 8 AA8 LYS A 309 GLY A 325 1 17 HELIX 9 AA9 THR A 333 ARG A 343 1 11 HELIX 10 AB1 THR A 353 LEU A 364 1 12 HELIX 11 AB2 ASN A 367 ARG A 371 5 5 HELIX 12 AB3 MET A 373 GLU A 379 1 7 HELIX 13 AB4 HIS A 380 SER A 387 1 8 HELIX 14 AB5 GLU B 62 SER B 64 5 3 HELIX 15 AB6 ARG B 75 ASP B 78 5 4 SHEET 1 AA1 5 PHE A 133 GLY A 142 0 SHEET 2 AA1 5 GLY A 145 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA1 5 ILE A 158 PHE A 165 -1 O LEU A 161 N TYR A 148 SHEET 4 AA1 5 ARG A 205 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 AA1 5 LEU A 196 HIS A 201 -1 N GLY A 198 O ILE A 209 SHEET 1 AA2 2 ILE A 253 HIS A 254 0 SHEET 2 AA2 2 TRP A 277 SER A 278 -1 O SER A 278 N ILE A 253 SHEET 1 AA3 2 LEU A 262 LEU A 264 0 SHEET 2 AA3 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 AA4 4 ARG B 3 THR B 7 0 SHEET 2 AA4 4 LEU B 19 ARG B 26 -1 O ASN B 22 N THR B 7 SHEET 3 AA4 4 SER B 66 ILE B 71 -1 O LEU B 69 N ILE B 21 SHEET 4 AA4 4 TYR B 56 ASP B 61 -1 N SER B 57 O THR B 70 SHEET 1 AA5 5 ILE B 10 GLU B 14 0 SHEET 2 AA5 5 THR B 99 LYS B 104 1 O VAL B 100 N ALA B 11 SHEET 3 AA5 5 GLY B 80 ILE B 87 -1 N GLY B 80 O LEU B 101 SHEET 4 AA5 5 ASN B 36 LYS B 41 -1 N ASN B 36 O LYS B 85 SHEET 5 AA5 5 GLU B 47 THR B 49 -1 O GLN B 48 N ARG B 39 SHEET 1 AA6 4 ILE B 10 GLU B 14 0 SHEET 2 AA6 4 THR B 99 LYS B 104 1 O VAL B 100 N ALA B 11 SHEET 3 AA6 4 GLY B 80 ILE B 87 -1 N GLY B 80 O LEU B 101 SHEET 4 AA6 4 SER B 93 GLU B 95 -1 O ARG B 94 N ALA B 86 SSBOND 1 CYS B 23 CYS B 84 1555 1555 2.04 SSBOND 2 CYS B 30 CYS B 90 1555 1555 2.05 LINK C THR A 287 N TPO A 288 1555 1555 1.33 LINK C TPO A 288 N LEU A 289 1555 1555 1.33 CISPEP 1 SER A 278 VAL A 279 0 -5.95 CISPEP 2 ALA A 281 PRO A 282 0 -7.46 CISPEP 3 THR B 7 PRO B 8 0 -2.72 SITE 1 AC1 16 GLY A 140 GLY A 142 LYS A 143 VAL A 147 SITE 2 AC1 16 ALA A 160 LYS A 162 LEU A 194 GLU A 211 SITE 3 AC1 16 ALA A 213 LEU A 263 HOH A 624 HOH A 632 SITE 4 AC1 16 HOH A 651 HOH A 687 HOH A 719 HOH A 722 SITE 1 AC2 5 HIS A 248 MET A 373 LEU A 374 HOH A 605 SITE 2 AC2 5 HOH A 629 SITE 1 AC3 6 LYS A 153 PRO A 349 ASP A 350 PHE A 351 SITE 2 AC3 6 HOH A 627 HOH A 640 SITE 1 AC4 3 TYR A 246 LYS A 250 HOH B 333 SITE 1 AC5 4 SER A 266 LYS A 339 ARG A 343 HOH A 608 SITE 1 AC6 2 GLN A 127 HOH A 634 SITE 1 AC7 1 VAL A 163 SITE 1 AC8 3 HIS A 187 GLU B 47 LYS B 85 SITE 1 AC9 3 ARG A 251 ARG B 55 TYR B 56 SITE 1 AD1 3 ARG A 232 THR A 235 SER A 388 SITE 1 AD2 5 ARG A 255 SER A 278 VAL A 279 SER A 283 SITE 2 AD2 5 HIS A 306 SITE 1 AD3 3 ARG A 126 GLN A 127 HOH A 615 SITE 1 AD4 4 MET B 1 ALA B 2 HOH B 307 HOH B 328 CRYST1 88.700 109.720 45.760 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021853 0.00000