HEADER OXIDOREDUCTASE 09-JUN-16 5L92 TITLE THE 2.1 A CRYSTAL STRUCTURE OF CYP109E1 FROM BACILLUS MEGATERIUM IN TITLE 2 COMPLEX WITH CORTICOSTERONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM (STRAIN DSM 319); SOURCE 3 ORGANISM_TAXID: 592022; SOURCE 4 STRAIN: DSM 319; SOURCE 5 GENE: BMD_3874; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43 KEYWDS BACILLUS, BACTERIAL PROTEINS, BINDING SITES, CATALYSIS, KEYWDS 2 CORTICOSTERONE, CYTOCHROME P-450 ENZYME SYSTEM, CYTOCHROME P450, KEYWDS 3 HYDROXYLATION, ESCHERICHIA COLI, HEME, LIGANDS, MOLECULAR STRUCTURE, KEYWDS 4 OXIDATION-REDUCTION, OXYGEN, PROTEIN, PROTEIN STRUCTURE, SECONDARY, KEYWDS 5 STEROIDS, SUBSTRATE SPECIFICITY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.K.JOZWIK,A.M.W.H.THUNNISSEN REVDAT 4 10-JAN-24 5L92 1 LINK REVDAT 3 30-NOV-16 5L92 1 JRNL REVDAT 2 12-OCT-16 5L92 1 JRNL REVDAT 1 05-OCT-16 5L92 0 JRNL AUTH I.K.JOZWIK,F.M.KISS,A.ABDULMUGHNI,E.BRILL,J.ZAPP,J.PLEISS, JRNL AUTH 2 R.BERNHARDT,A.W.THUNNISSEN JRNL TITL STRUCTURAL BASIS OF STEROID BINDING AND OXIDATION BY THE JRNL TITL 2 CYTOCHROME P450 CYP109E1 FROM BACILLUS MEGATERIUM. JRNL REF FEBS J. V. 283 4128 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27686671 JRNL DOI 10.1111/FEBS.13911 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 51292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 5216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7746 - 6.5178 0.96 3192 111 0.1448 0.1714 REMARK 3 2 6.5178 - 5.1762 0.97 3182 185 0.1633 0.1972 REMARK 3 3 5.1762 - 4.5227 0.97 3215 169 0.1404 0.1529 REMARK 3 4 4.5227 - 4.1096 0.98 3244 112 0.1424 0.1557 REMARK 3 5 4.1096 - 3.8152 0.95 3183 124 0.1584 0.2036 REMARK 3 6 3.8152 - 3.5904 0.91 3000 162 0.1921 0.1875 REMARK 3 7 3.5904 - 3.4107 0.97 3201 164 0.2019 0.2388 REMARK 3 8 3.4107 - 3.2622 0.99 3302 144 0.2082 0.2561 REMARK 3 9 3.2622 - 3.1367 0.99 3261 142 0.2079 0.2818 REMARK 3 10 3.1367 - 3.0285 0.99 3174 231 0.2248 0.2726 REMARK 3 11 3.0285 - 2.9338 1.00 3299 196 0.2305 0.3081 REMARK 3 12 2.9338 - 2.8500 1.00 3244 191 0.2212 0.2739 REMARK 3 13 2.8500 - 2.7750 0.99 3247 193 0.2365 0.3001 REMARK 3 14 2.7750 - 2.7073 0.98 3204 197 0.2230 0.2869 REMARK 3 15 2.7073 - 2.6457 0.98 3222 173 0.2224 0.2618 REMARK 3 16 2.6457 - 2.5894 0.98 3254 186 0.2228 0.2609 REMARK 3 17 2.5894 - 2.5376 0.99 3257 155 0.2233 0.2499 REMARK 3 18 2.5376 - 2.4898 0.99 3295 165 0.2327 0.2979 REMARK 3 19 2.4898 - 2.4453 0.98 3233 172 0.2316 0.2536 REMARK 3 20 2.4453 - 2.4039 0.99 3260 174 0.2262 0.2513 REMARK 3 21 2.4039 - 2.3651 0.99 3246 156 0.2320 0.2835 REMARK 3 22 2.3651 - 2.3287 0.99 3252 170 0.2250 0.2699 REMARK 3 23 2.3287 - 2.2945 0.99 3254 200 0.2404 0.2664 REMARK 3 24 2.2945 - 2.2621 0.94 3038 196 0.2927 0.3112 REMARK 3 25 2.2621 - 2.2316 0.66 2194 124 0.4413 0.5463 REMARK 3 26 2.2316 - 2.2026 0.94 3051 181 0.3142 0.3414 REMARK 3 27 2.2026 - 2.1751 0.99 3270 207 0.2635 0.3412 REMARK 3 28 2.1751 - 2.1489 0.99 3197 190 0.2661 0.3096 REMARK 3 29 2.1489 - 2.1239 0.99 3189 219 0.2811 0.2820 REMARK 3 30 2.1239 - 2.1000 0.98 3215 227 0.2653 0.3023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6460 REMARK 3 ANGLE : 1.299 8760 REMARK 3 CHIRALITY : 0.071 942 REMARK 3 PLANARITY : 0.007 1124 REMARK 3 DIHEDRAL : 16.370 2467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 3350 AND 8% TACSIMATE PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.85050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 VAL A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 ASN A 14 REMARK 465 THR A 15 REMARK 465 PRO A 72 REMARK 465 GLN A 73 REMARK 465 ASN A 74 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLY B 8 REMARK 465 ILE B 9 REMARK 465 VAL B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 VAL B 13 REMARK 465 ASN B 14 REMARK 465 THR B 15 REMARK 465 ILE B 16 REMARK 465 GLN B 17 REMARK 465 THR B 18 REMARK 465 ARG B 69 REMARK 465 ARG B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 GLN B 73 REMARK 465 ASN B 74 REMARK 465 GLN B 75 REMARK 465 ARG B 76 REMARK 465 GLN B 77 REMARK 465 THR B 78 REMARK 465 ALA B 79 REMARK 465 LEU B 80 REMARK 465 ALA B 170 REMARK 465 GLY B 171 REMARK 465 PRO B 172 REMARK 465 SER B 173 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 130 N ASN B 403 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 35 -62.78 -125.53 REMARK 500 LEU A 138 -64.55 -141.66 REMARK 500 THR A 246 -75.49 -123.00 REMARK 500 ALA A 309 131.19 -39.94 REMARK 500 ASN A 340 77.69 -152.17 REMARK 500 ARG A 347 129.18 -175.32 REMARK 500 LEU A 398 88.65 -154.06 REMARK 500 ALA B 36 74.93 -157.67 REMARK 500 LEU B 138 -61.62 -127.61 REMARK 500 ARG B 347 138.43 -172.85 REMARK 500 LEU B 398 84.50 -154.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 352 SG REMARK 620 2 HEM A 501 NA 97.8 REMARK 620 3 HEM A 501 NB 91.9 90.9 REMARK 620 4 HEM A 501 NC 85.7 176.5 88.9 REMARK 620 5 HEM A 501 ND 95.1 85.7 172.6 94.0 REMARK 620 6 C0R A 502 O1 171.5 90.6 88.7 85.9 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 352 SG REMARK 620 2 HEM B 501 NA 102.0 REMARK 620 3 HEM B 501 NB 91.5 88.1 REMARK 620 4 HEM B 501 NC 88.4 167.2 84.0 REMARK 620 5 HEM B 501 ND 101.0 89.4 167.5 96.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C0R A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 DBREF 5L92 A 1 404 UNP D5DKI8 D5DKI8_BACMD 1 404 DBREF 5L92 B 1 404 UNP D5DKI8 D5DKI8_BACMD 1 404 SEQADV 5L92 HIS A 405 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS A 406 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS A 407 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS A 408 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS A 409 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS A 410 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 405 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 406 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 407 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 408 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 409 UNP D5DKI8 EXPRESSION TAG SEQADV 5L92 HIS B 410 UNP D5DKI8 EXPRESSION TAG SEQRES 1 A 410 MET LYS THR GLU ARG GLU ASN GLY ILE VAL ARG GLN VAL SEQRES 2 A 410 ASN THR ILE GLN THR LYS GLU GLU ARG PHE ASN PRO PHE SEQRES 3 A 410 SER TRP TYR GLU GLU MET ARG ASN THR ALA PRO VAL GLN SEQRES 4 A 410 TRP ASP GLU GLU ARG GLN VAL TRP ASP VAL PHE HIS TYR SEQRES 5 A 410 ASP GLY VAL LYS GLU VAL LEU GLU GLN LYS ASN ILE PHE SEQRES 6 A 410 SER SER ASP ARG ARG PRO PRO GLN ASN GLN ARG GLN THR SEQRES 7 A 410 ALA LEU GLY THR SER LEU ILE ASN ILE ASP PRO PRO LYS SEQRES 8 A 410 HIS ALA GLU MET ARG ALA LEU VAL ASN LYS ALA PHE THR SEQRES 9 A 410 PRO LYS ALA MET LYS ALA TRP GLU PRO LYS ILE ALA ARG SEQRES 10 A 410 ILE THR ASN GLU LEU LEU GLN GLU VAL GLU HIS LEU GLU SEQRES 11 A 410 ASP ILE ASP ILE VAL GLU HIS LEU SER TYR PRO LEU PRO SEQRES 12 A 410 VAL MET VAL ILE ALA ASP ILE LEU GLY VAL PRO ILE GLU SEQRES 13 A 410 ASP GLN ARG GLN PHE LYS ASP TRP SER ASP ILE ILE VAL SEQRES 14 A 410 ALA GLY PRO SER ASN ASN GLU ARG GLU THR LEU GLU LYS SEQRES 15 A 410 LEU GLN GLN GLU LYS MET LYS ALA ASN ASP GLU LEU GLU SEQRES 16 A 410 THR TYR PHE TYR ARG ILE ILE GLU GLU LYS ARG THR ARG SEQRES 17 A 410 PRO GLY ASP ASP ILE ILE SER VAL LEU LEU GLN ALA LYS SEQRES 18 A 410 GLU GLU GLY LYS GLN LEU THR ASP GLU GLU ILE VAL GLY SEQRES 19 A 410 PHE SER ILE LEU LEU LEU ILE ALA GLY ASN GLU THR THR SEQRES 20 A 410 THR ASN LEU ILE SER ASN THR ILE TYR CYS LEU MET GLU SEQRES 21 A 410 ASP LYS ALA SER PHE GLU ARG LEU LYS ARG GLU LYS GLU SEQRES 22 A 410 LEU LEU PRO SER GLY ILE GLU GLU VAL LEU ARG TYR ARG SEQRES 23 A 410 SER PRO VAL GLN ALA LEU HIS ARG ILE VAL LYS GLU ASP SEQRES 24 A 410 VAL THR LEU ALA GLY LYS LYS LEU LYS ALA GLY GLU HIS SEQRES 25 A 410 VAL VAL PRO TRP MET GLY SER ALA HIS ARG ASP ALA GLU SEQRES 26 A 410 TYR PHE GLU ASP PRO GLU VAL PHE LYS ILE ASP ARG LYS SEQRES 27 A 410 PRO ASN VAL HIS MET ALA PHE GLY ARG GLY ILE HIS PHE SEQRES 28 A 410 CYS LEU GLY ALA PRO LEU ALA ARG ILE GLU ALA LYS ILE SEQRES 29 A 410 MET LEU ALA GLU LEU ILE ASP ARG TYR PRO GLN MET ASP SEQRES 30 A 410 TRP SER PRO SER PHE GLU LEU LYS PRO ILE GLU SER THR SEQRES 31 A 410 PHE VAL TYR GLY LEU LYS GLU LEU LEU ILE ARG LYS ASN SEQRES 32 A 410 VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 410 MET LYS THR GLU ARG GLU ASN GLY ILE VAL ARG GLN VAL SEQRES 2 B 410 ASN THR ILE GLN THR LYS GLU GLU ARG PHE ASN PRO PHE SEQRES 3 B 410 SER TRP TYR GLU GLU MET ARG ASN THR ALA PRO VAL GLN SEQRES 4 B 410 TRP ASP GLU GLU ARG GLN VAL TRP ASP VAL PHE HIS TYR SEQRES 5 B 410 ASP GLY VAL LYS GLU VAL LEU GLU GLN LYS ASN ILE PHE SEQRES 6 B 410 SER SER ASP ARG ARG PRO PRO GLN ASN GLN ARG GLN THR SEQRES 7 B 410 ALA LEU GLY THR SER LEU ILE ASN ILE ASP PRO PRO LYS SEQRES 8 B 410 HIS ALA GLU MET ARG ALA LEU VAL ASN LYS ALA PHE THR SEQRES 9 B 410 PRO LYS ALA MET LYS ALA TRP GLU PRO LYS ILE ALA ARG SEQRES 10 B 410 ILE THR ASN GLU LEU LEU GLN GLU VAL GLU HIS LEU GLU SEQRES 11 B 410 ASP ILE ASP ILE VAL GLU HIS LEU SER TYR PRO LEU PRO SEQRES 12 B 410 VAL MET VAL ILE ALA ASP ILE LEU GLY VAL PRO ILE GLU SEQRES 13 B 410 ASP GLN ARG GLN PHE LYS ASP TRP SER ASP ILE ILE VAL SEQRES 14 B 410 ALA GLY PRO SER ASN ASN GLU ARG GLU THR LEU GLU LYS SEQRES 15 B 410 LEU GLN GLN GLU LYS MET LYS ALA ASN ASP GLU LEU GLU SEQRES 16 B 410 THR TYR PHE TYR ARG ILE ILE GLU GLU LYS ARG THR ARG SEQRES 17 B 410 PRO GLY ASP ASP ILE ILE SER VAL LEU LEU GLN ALA LYS SEQRES 18 B 410 GLU GLU GLY LYS GLN LEU THR ASP GLU GLU ILE VAL GLY SEQRES 19 B 410 PHE SER ILE LEU LEU LEU ILE ALA GLY ASN GLU THR THR SEQRES 20 B 410 THR ASN LEU ILE SER ASN THR ILE TYR CYS LEU MET GLU SEQRES 21 B 410 ASP LYS ALA SER PHE GLU ARG LEU LYS ARG GLU LYS GLU SEQRES 22 B 410 LEU LEU PRO SER GLY ILE GLU GLU VAL LEU ARG TYR ARG SEQRES 23 B 410 SER PRO VAL GLN ALA LEU HIS ARG ILE VAL LYS GLU ASP SEQRES 24 B 410 VAL THR LEU ALA GLY LYS LYS LEU LYS ALA GLY GLU HIS SEQRES 25 B 410 VAL VAL PRO TRP MET GLY SER ALA HIS ARG ASP ALA GLU SEQRES 26 B 410 TYR PHE GLU ASP PRO GLU VAL PHE LYS ILE ASP ARG LYS SEQRES 27 B 410 PRO ASN VAL HIS MET ALA PHE GLY ARG GLY ILE HIS PHE SEQRES 28 B 410 CYS LEU GLY ALA PRO LEU ALA ARG ILE GLU ALA LYS ILE SEQRES 29 B 410 MET LEU ALA GLU LEU ILE ASP ARG TYR PRO GLN MET ASP SEQRES 30 B 410 TRP SER PRO SER PHE GLU LEU LYS PRO ILE GLU SER THR SEQRES 31 B 410 PHE VAL TYR GLY LEU LYS GLU LEU LEU ILE ARG LYS ASN SEQRES 32 B 410 VAL HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HET C0R A 502 25 HET MLA A 503 7 HET HEM B 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM C0R CORTICOSTERONE HETNAM MLA MALONIC ACID HETSYN HEM HEME HETSYN C0R (11-BETA)-11,21-DIHYDROXY-PREGN-4-ENE-3,20-DIONE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 C0R C21 H30 O4 FORMUL 5 MLA C3 H4 O4 FORMUL 7 HOH *123(H2 O) HELIX 1 AA1 THR A 18 PHE A 23 1 6 HELIX 2 AA2 PRO A 25 ASN A 34 1 10 HELIX 3 AA3 HIS A 51 GLN A 61 1 11 HELIX 4 AA4 ALA A 79 ILE A 87 5 9 HELIX 5 AA5 PRO A 90 LEU A 98 1 9 HELIX 6 AA6 VAL A 99 PHE A 103 5 5 HELIX 7 AA7 THR A 104 ALA A 110 1 7 HELIX 8 AA8 TRP A 111 VAL A 126 1 16 HELIX 9 AA9 ILE A 134 LEU A 138 1 5 HELIX 10 AB1 TYR A 140 GLY A 152 1 13 HELIX 11 AB2 PRO A 154 GLU A 156 5 3 HELIX 12 AB3 ASP A 157 ALA A 170 1 14 HELIX 13 AB4 GLU A 176 ARG A 208 1 33 HELIX 14 AB5 ASP A 212 GLU A 223 1 12 HELIX 15 AB6 THR A 228 THR A 246 1 19 HELIX 16 AB7 THR A 246 ASP A 261 1 16 HELIX 17 AB8 ASP A 261 GLU A 271 1 11 HELIX 18 AB9 LEU A 274 ARG A 286 1 13 HELIX 19 AC1 TRP A 316 HIS A 321 1 6 HELIX 20 AC2 GLY A 354 TYR A 373 1 20 HELIX 21 AC3 PRO B 25 ALA B 36 1 12 HELIX 22 AC4 HIS B 51 GLN B 61 1 11 HELIX 23 AC5 SER B 83 ILE B 87 5 5 HELIX 24 AC6 PRO B 90 LYS B 101 1 12 HELIX 25 AC7 ALA B 102 THR B 104 5 3 HELIX 26 AC8 ALA B 110 GLU B 125 1 16 HELIX 27 AC9 ILE B 134 LEU B 138 1 5 HELIX 28 AD1 TYR B 140 GLY B 152 1 13 HELIX 29 AD2 PRO B 154 GLU B 156 5 3 HELIX 30 AD3 ASP B 157 VAL B 169 1 13 HELIX 31 AD4 THR B 179 ARG B 208 1 30 HELIX 32 AD5 ASP B 212 ALA B 220 1 9 HELIX 33 AD6 THR B 228 ASP B 261 1 34 HELIX 34 AD7 ASP B 261 GLU B 271 1 11 HELIX 35 AD8 LEU B 274 ARG B 286 1 13 HELIX 36 AD9 TRP B 316 HIS B 321 1 6 HELIX 37 AE1 GLY B 354 TYR B 373 1 20 SHEET 1 AA1 5 VAL A 38 ASP A 41 0 SHEET 2 AA1 5 VAL A 46 VAL A 49 -1 O VAL A 46 N ASP A 41 SHEET 3 AA1 5 HIS A 312 PRO A 315 1 O VAL A 314 N TRP A 47 SHEET 4 AA1 5 ARG A 294 VAL A 296 -1 N ARG A 294 O VAL A 313 SHEET 5 AA1 5 PHE A 65 SER A 66 -1 N SER A 66 O ILE A 295 SHEET 1 AA2 3 ASP A 131 ASP A 133 0 SHEET 2 AA2 3 LEU A 399 ARG A 401 -1 O ILE A 400 N ILE A 132 SHEET 3 AA2 3 ASP A 377 TRP A 378 -1 N ASP A 377 O ARG A 401 SHEET 1 AA3 2 VAL A 300 LEU A 302 0 SHEET 2 AA3 2 LYS A 305 LEU A 307 -1 O LEU A 307 N VAL A 300 SHEET 1 AA4 5 VAL B 38 ASP B 41 0 SHEET 2 AA4 5 VAL B 46 VAL B 49 -1 O ASP B 48 N GLN B 39 SHEET 3 AA4 5 HIS B 312 PRO B 315 1 O VAL B 314 N TRP B 47 SHEET 4 AA4 5 ARG B 294 VAL B 296 -1 N ARG B 294 O VAL B 313 SHEET 5 AA4 5 PHE B 65 SER B 67 -1 N SER B 66 O ILE B 295 SHEET 1 AA5 3 ASP B 131 ASP B 133 0 SHEET 2 AA5 3 LEU B 399 ARG B 401 -1 O ILE B 400 N ILE B 132 SHEET 3 AA5 3 ASP B 377 TRP B 378 -1 N ASP B 377 O ARG B 401 SHEET 1 AA6 2 VAL B 300 LEU B 302 0 SHEET 2 AA6 2 LYS B 305 LEU B 307 -1 O LEU B 307 N VAL B 300 LINK SG CYS A 352 FE HEM A 501 1555 1555 2.36 LINK FE HEM A 501 O1 C0R A 502 1555 1555 1.88 LINK SG CYS B 352 FE HEM B 501 1555 1555 2.28 CISPEP 1 PRO A 89 PRO A 90 0 -0.26 CISPEP 2 LYS A 338 PRO A 339 0 -5.33 CISPEP 3 PRO B 89 PRO B 90 0 5.47 CISPEP 4 LYS B 338 PRO B 339 0 -7.07 SITE 1 AC1 24 LEU A 84 ILE A 85 HIS A 92 ARG A 96 SITE 2 AC1 24 LEU A 238 LEU A 239 ALA A 242 THR A 246 SITE 3 AC1 24 THR A 247 LEU A 250 LEU A 292 ARG A 294 SITE 4 AC1 24 ALA A 344 PHE A 345 GLY A 346 ILE A 349 SITE 5 AC1 24 HIS A 350 CYS A 352 GLY A 354 ALA A 358 SITE 6 AC1 24 C0R A 502 MLA A 503 HOH A 613 HOH A 629 SITE 1 AC2 7 ILE A 168 LEU A 238 ILE A 241 ALA A 242 SITE 2 AC2 7 PHE A 391 HEM A 501 MLA A 503 SITE 1 AC3 8 ARG A 69 ILE A 85 LEU A 292 HIS A 293 SITE 2 AC3 8 ARG A 294 PHE A 391 HEM A 501 C0R A 502 SITE 1 AC4 24 LEU B 84 ILE B 85 HIS B 92 ARG B 96 SITE 2 AC4 24 ILE B 147 ALA B 242 GLY B 243 THR B 246 SITE 3 AC4 24 THR B 247 LEU B 292 ARG B 294 ALA B 344 SITE 4 AC4 24 PHE B 345 GLY B 346 ILE B 349 HIS B 350 SITE 5 AC4 24 CYS B 352 GLY B 354 LEU B 357 ALA B 358 SITE 6 AC4 24 HOH B 617 HOH B 619 HOH B 624 HOH B 632 CRYST1 60.495 135.701 61.567 90.00 114.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016530 0.000000 0.007505 0.00000 SCALE2 0.000000 0.007369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017838 0.00000