HEADER IMMUNE SYSTEM 10-JUN-16 5L9D TITLE AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSYLATED, CRYSTAL FORM I, TITLE 2 PARSIMONIOUS MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN; COMPND 6 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 STRAIN: BALB/C KEYWDS AFAMIN ANTIBODY, FAB FRAGMENT, IGG1-KAPPA, LIGHT CHAIN GLYCOSILATION, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.RUPP,A.NASCHBERGER REVDAT 8 10-JAN-24 5L9D 1 HETSYN REVDAT 7 29-JUL-20 5L9D 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 22-NOV-17 5L9D 1 REMARK REVDAT 5 06-SEP-17 5L9D 1 REMARK REVDAT 4 21-DEC-16 5L9D 1 JRNL REVDAT 3 07-DEC-16 5L9D 1 JRNL REVDAT 2 16-NOV-16 5L9D 1 REMARK REVDAT 1 03-AUG-16 5L9D 0 JRNL AUTH A.NASCHBERGER,B.G.FURNROHR,T.LENAC ROVIS,S.MALIC, JRNL AUTH 2 K.SCHEFFZEK,H.DIEPLINGER,B.RUPP JRNL TITL THE N14 ANTI-AFAMIN ANTIBODY FAB: A RARE VL1 CDR JRNL TITL 2 GLYCOSYLATION, CRYSTALLOGRAPHIC RE-SEQUENCING, MOLECULAR JRNL TITL 3 PLASTICITY AND CONSERVATIVE VERSUS ENTHUSIASTIC MODELLING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 1267 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27917827 JRNL DOI 10.1107/S205979831601723X REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1659 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3565 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3225 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4839 ; 1.355 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7538 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 6.530 ; 5.022 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;37.013 ;24.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;12.886 ;15.027 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.747 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3948 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 763 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1764 ; 2.076 ; 5.532 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1763 ; 2.071 ; 5.524 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2216 ; 3.049 ;10.310 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2217 ; 3.051 ;10.320 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 3.018 ; 6.350 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1802 ; 3.018 ; 6.352 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2616 ; 4.477 ;11.431 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3898 ; 6.392 ;26.607 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3885 ; 6.364 ;26.571 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 107 REMARK 3 RESIDUE RANGE : L 301 L 301 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2931 2.0673 22.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0510 REMARK 3 T33: 0.0313 T12: -0.0184 REMARK 3 T13: -0.0471 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.8411 L22: 0.2237 REMARK 3 L33: 0.6644 L12: 0.1481 REMARK 3 L13: 0.3138 L23: 0.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0288 S13: -0.0425 REMARK 3 S21: 0.1041 S22: -0.0159 S23: -0.0513 REMARK 3 S31: 0.0637 S32: -0.0449 S33: -0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4065 32.1186 32.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.0718 REMARK 3 T33: 0.0159 T12: 0.0073 REMARK 3 T13: -0.0128 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.0824 L22: 1.1792 REMARK 3 L33: 0.5069 L12: 0.1447 REMARK 3 L13: -0.1588 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: -0.0315 S13: 0.0212 REMARK 3 S21: -0.0137 S22: 0.0310 S23: -0.0020 REMARK 3 S31: 0.0177 S32: 0.0753 S33: -0.0657 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6458 11.2664 2.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.0933 REMARK 3 T33: 0.0329 T12: 0.0122 REMARK 3 T13: 0.0079 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0869 L22: 0.5517 REMARK 3 L33: 0.6591 L12: 0.0565 REMARK 3 L13: -0.0497 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.0476 S13: 0.0157 REMARK 3 S21: 0.0159 S22: 0.0171 S23: -0.0553 REMARK 3 S31: 0.0465 S32: -0.0378 S33: -0.0311 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 214 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2849 26.4413 18.9307 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.1114 REMARK 3 T33: 0.0107 T12: 0.0194 REMARK 3 T13: -0.0048 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.5834 L22: 0.0139 REMARK 3 L33: 1.0212 L12: 0.0414 REMARK 3 L13: 0.2028 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0142 S13: -0.0237 REMARK 3 S21: 0.0130 S22: 0.0269 S23: -0.0028 REMARK 3 S31: -0.0268 S32: 0.0888 S33: -0.0544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TORROIDAL FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 54.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 99.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1IL1 REMARK 200 REMARK 200 REMARK: BLOCK-SHAPED CRYSTALS WITH SHARP EDGES (0.15 X 0.15 X 0.3 REMARK 200 MM) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200NL FAB 10MG/ML IN 20 MM HEPES PH REMARK 280 7.5 REMARK 280 7.5, 150 MM NACL PLUS 200NL 30%W/V PEG 1K, 200MM REMARK 280 KF, PH 5.8), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.89100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.90150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.62450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.90150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.89100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.62450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 129 REMARK 465 ALA H 130 REMARK 465 GLN H 131 REMARK 465 THR H 132 REMARK 465 CYS H 215 REMARK 465 ASP L 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 96 -164.20 -112.81 REMARK 500 THR L 51 -49.09 73.86 REMARK 500 ALA L 84 175.51 179.58 REMARK 500 ASP L 151 47.41 39.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K H 306 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 55 OD1 REMARK 620 2 SER H 71 O 103.3 REMARK 620 3 ASP H 207 O 118.4 15.9 REMARK 620 4 ASP H 207 OD2 119.0 15.7 4.0 REMARK 620 5 HOH H 409 O 122.8 19.5 5.3 3.9 REMARK 620 6 HOH H 442 O 119.0 16.5 0.7 4.4 5.2 REMARK 620 7 HOH H 491 O 115.6 12.4 4.3 3.5 7.2 5.0 REMARK 620 8 HOH H 513 O 119.5 16.3 3.2 1.1 3.2 3.5 3.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L7X RELATED DB: PDB REMARK 900 5L7X IS CRYSTAL FORM II REMARK 900 RELATED ID: 5LGH RELATED DB: PDB REMARK 900 5LGH IS CRYSTAL FORM II (5L7X) IN SETTING OF 5L88 AND 5L9D (CRYSTAL REMARK 900 FORM I) WITH NON-APPARENT ISOMORPHISM DBREF 5L9D H 1 215 PDB 5L9D 5L9D 1 215 DBREF 5L9D L 1 214 PDB 5L9D 5L9D 1 214 SEQRES 1 H 220 GLU VAL LYS LEU GLU GLU SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 220 PRO GLY ALA SER MET LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR PHE THR SER TYR ILE ILE HIS TRP LEU LYS GLN SEQRES 4 H 220 LYS PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 220 PRO TYR ASN ASP GLY SER LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 220 GLY LYS ALA THR LEU THR SER ASP LYS SER SER SER THR SEQRES 7 H 220 ALA TYR MET GLU LEU SER SER LEU ALA SER GLU ASP SER SEQRES 8 H 220 ALA VAL TYR TYR CYS THR ARG ASN TYR GLY SER ASP SER SEQRES 9 H 220 LEU ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SEQRES 10 H 220 SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 220 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 L 215 ASP ILE VAL LEU THR GLN THR PRO ALA ILE MET SER ALA SEQRES 2 L 215 SER LEU GLY GLU ARG VAL THR MET THR CYS THR ALA ASN SEQRES 3 L 215 SER SER VAL SER SER ASN TYR PHE HIS TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY SER SER PRO LYS LEU TRP ILE TYR SER THR SEQRES 5 L 215 SER ASN LEU ALA SER GLY VAL PRO THR ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR SER TYR SER LEU THR LEU SER SER SEQRES 7 L 215 MET GLU ALA GLU ASP ALA ALA THR TYR TYR CYS HIS GLN SEQRES 8 L 215 TYR HIS ARG SER PRO PRO THR PHE GLY SER GLY THR LYS SEQRES 9 L 215 LEU LYS MET LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS HET PG4 H 301 13 HET PE8 H 302 25 HET PGE H 303 10 HET PEG H 304 7 HET PG4 H 305 13 HET K H 306 1 HET PEG H 307 7 HET PEG L 301 7 HET NAG L 302 14 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM K POTASSIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 PG4 2(C8 H18 O5) FORMUL 4 PE8 C16 H34 O9 FORMUL 5 PGE C6 H14 O4 FORMUL 6 PEG 3(C4 H10 O3) FORMUL 8 K K 1+ FORMUL 11 NAG C8 H15 N O6 FORMUL 12 HOH *221(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLU H 61 LYS H 64 5 4 HELIX 3 AA3 LYS H 73 SER H 75 5 3 HELIX 4 AA4 ALA H 83 SER H 87 5 5 HELIX 5 AA5 GLY H 97 ASP H 99 5 3 HELIX 6 AA6 PRO H 200 SER H 203 5 4 HELIX 7 AA7 SER L 29 ASN L 31 5 3 HELIX 8 AA8 GLU L 79 ALA L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 HELIX 11 AB2 ASN L 212 CYS L 214 5 3 SHEET 1 AA1 4 LYS H 3 GLU H 6 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O LYS H 23 N GLU H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O LEU H 82 N MET H 18 SHEET 4 AA1 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ASN H 95 -1 N ALA H 88 O LEU H 109 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N HIS H 35 O THR H 93 SHEET 5 AA2 6 LEU H 45 ASN H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 AA2 6 GLY H 56 TYR H 59 -1 O GLY H 56 N ASN H 52 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ASN H 95 -1 N ALA H 88 O LEU H 109 SHEET 4 AA3 4 LEU H 100A TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 MET H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 MET H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 AA5 4 VAL H 169 GLN H 171 -1 N VAL H 169 O THR H 176 SHEET 1 AA6 3 THR H 151 ASN H 155 0 SHEET 2 AA6 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 AA6 3 THR H 204 LYS H 209 -1 O LYS H 208 N CYS H 195 SHEET 1 AA7 4 LEU L 4 THR L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 24 N THR L 5 SHEET 3 AA7 4 SER L 70 LEU L 75 -1 O LEU L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 ILE L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 MET L 106 1 O LYS L 105 N MET L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 6 PHE L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O TRP L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 ILE L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 MET L 106 1 O LYS L 105 N MET L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AB1 4 TYR L 173 THR L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 SER L 153 ARG L 155 0 SHEET 2 AB2 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB2 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 AB2 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN L 26 C1 NAG L 302 1555 1555 1.45 LINK OD1 ASP H 55 K K H 306 1555 4455 2.94 LINK O SER H 71 K K H 306 1555 4455 2.71 LINK O ASP H 207 K K H 306 1555 1555 2.85 LINK OD2 ASP H 207 K K H 306 1555 1555 2.90 LINK K K H 306 O HOH H 409 1555 4555 3.44 LINK K K H 306 O HOH H 442 1555 1555 2.92 LINK K K H 306 O HOH H 491 1555 1555 3.01 LINK K K H 306 O HOH H 513 1555 4555 3.04 CISPEP 1 PHE H 146 PRO H 147 0 -8.33 CISPEP 2 GLU H 148 PRO H 149 0 -0.48 CISPEP 3 TRP H 188 PRO H 189 0 7.65 CISPEP 4 THR L 7 PRO L 8 0 -5.90 CISPEP 5 SER L 94 PRO L 95 0 1.07 CISPEP 6 TYR L 140 PRO L 141 0 2.35 CRYST1 67.782 69.249 87.803 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011389 0.00000