data_5L9M # _entry.id 5L9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5L9M WWPDB D_1200000381 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2018-10-31 _pdbx_database_PDB_obs_spr.pdb_id 6HQH _pdbx_database_PDB_obs_spr.replace_pdb_id 5L9M _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L9M _pdbx_database_status.recvd_initial_deposition_date 2016-06-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Marty, L.' 1 'Morera, S.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 291 _citation.language ? _citation.page_first 22638 _citation.page_last 22649 _citation.title 'Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M116.745562 _citation.pdbx_database_id_PubMed 27609514 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Marty, L.' 1 ? primary 'Vigouroux, A.' 2 ? primary 'Aumont-Nicaise, M.' 3 ? primary 'Dessaux, Y.' 4 ? primary 'Faure, D.' 5 ? primary 'Morera, S.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 105.66 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5L9M _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.680 _cell.length_a_esd ? _cell.length_b 62.350 _cell.length_b_esd ? _cell.length_c 43.450 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein' 29010.648 1 ? ? ? ? 2 non-polymer syn Deoxyfructosylglutamine 308.285 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMDNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQ EFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAG TDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDG TWKKLHEKWFPGTPMPAAYLPKQHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMDNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQ EFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAG TDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDG TWKKLHEKWFPGTPMPAAYLPKQHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ASP n 1 23 ASN n 1 24 PRO n 1 25 LEU n 1 26 GLY n 1 27 LEU n 1 28 ILE n 1 29 ASP n 1 30 PRO n 1 31 THR n 1 32 THR n 1 33 ILE n 1 34 SER n 1 35 VAL n 1 36 GLY n 1 37 THR n 1 38 MET n 1 39 GLY n 1 40 ASP n 1 41 ALA n 1 42 LYS n 1 43 PRO n 1 44 TYR n 1 45 ALA n 1 46 PHE n 1 47 THR n 1 48 THR n 1 49 ALA n 1 50 ASP n 1 51 GLY n 1 52 ASN n 1 53 PHE n 1 54 THR n 1 55 GLY n 1 56 PHE n 1 57 ASP n 1 58 ILE n 1 59 GLU n 1 60 LEU n 1 61 PHE n 1 62 LEU n 1 63 ASN n 1 64 VAL n 1 65 ALA n 1 66 GLY n 1 67 ARG n 1 68 LEU n 1 69 GLY n 1 70 PHE n 1 71 LYS n 1 72 LYS n 1 73 GLU n 1 74 GLN n 1 75 VAL n 1 76 VAL n 1 77 PHE n 1 78 THR n 1 79 GLY n 1 80 GLN n 1 81 GLU n 1 82 PHE n 1 83 SER n 1 84 ALA n 1 85 LEU n 1 86 MET n 1 87 PRO n 1 88 SER n 1 89 VAL n 1 90 ALA n 1 91 ASN n 1 92 GLY n 1 93 ARG n 1 94 PHE n 1 95 ASP n 1 96 VAL n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 ALA n 1 101 ILE n 1 102 GLY n 1 103 THR n 1 104 THR n 1 105 ALA n 1 106 LYS n 1 107 ARG n 1 108 LYS n 1 109 GLU n 1 110 THR n 1 111 VAL n 1 112 ASP n 1 113 PHE n 1 114 SER n 1 115 ASP n 1 116 GLY n 1 117 TYR n 1 118 LEU n 1 119 ALA n 1 120 GLY n 1 121 PHE n 1 122 LEU n 1 123 SER n 1 124 VAL n 1 125 LEU n 1 126 THR n 1 127 SER n 1 128 GLU n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 THR n 1 133 ASP n 1 134 ALA n 1 135 ALA n 1 136 GLY n 1 137 LEU n 1 138 LYS n 1 139 GLY n 1 140 LYS n 1 141 ARG n 1 142 LEU n 1 143 GLY n 1 144 VAL n 1 145 VAL n 1 146 GLN n 1 147 GLY n 1 148 THR n 1 149 LEU n 1 150 GLN n 1 151 GLU n 1 152 ILE n 1 153 TYR n 1 154 ALA n 1 155 GLU n 1 156 LYS n 1 157 ASN n 1 158 PHE n 1 159 ALA n 1 160 GLY n 1 161 THR n 1 162 ASP n 1 163 LEU n 1 164 VAL n 1 165 LYS n 1 166 PHE n 1 167 PRO n 1 168 ASP n 1 169 ASN n 1 170 ASN n 1 171 SER n 1 172 ALA n 1 173 VAL n 1 174 SER n 1 175 ALA n 1 176 LEU n 1 177 ASN n 1 178 ASN n 1 179 GLY n 1 180 THR n 1 181 VAL n 1 182 ASP n 1 183 ALA n 1 184 HIS n 1 185 PHE n 1 186 LEU n 1 187 ASP n 1 188 PHE n 1 189 GLU n 1 190 ALA n 1 191 ALA n 1 192 LYS n 1 193 ASP n 1 194 TYR n 1 195 SER n 1 196 ALA n 1 197 ARG n 1 198 TYR n 1 199 PRO n 1 200 ALA n 1 201 LEU n 1 202 LYS n 1 203 ILE n 1 204 ALA n 1 205 VAL n 1 206 ASN n 1 207 ILE n 1 208 PRO n 1 209 SER n 1 210 PHE n 1 211 ASP n 1 212 ALA n 1 213 PRO n 1 214 ALA n 1 215 GLY n 1 216 PHE n 1 217 VAL n 1 218 ILE n 1 219 ARG n 1 220 LYS n 1 221 GLY n 1 222 ASN n 1 223 ASP n 1 224 ALA n 1 225 LEU n 1 226 ARG n 1 227 ASN n 1 228 ALA n 1 229 LEU n 1 230 ASP n 1 231 LYS n 1 232 GLY n 1 233 LEU n 1 234 LYS n 1 235 GLU n 1 236 ALA n 1 237 MET n 1 238 GLN n 1 239 ASP n 1 240 GLY n 1 241 THR n 1 242 TRP n 1 243 LYS n 1 244 LYS n 1 245 LEU n 1 246 HIS n 1 247 GLU n 1 248 LYS n 1 249 TRP n 1 250 PHE n 1 251 PRO n 1 252 GLY n 1 253 THR n 1 254 PRO n 1 255 MET n 1 256 PRO n 1 257 ALA n 1 258 ALA n 1 259 TYR n 1 260 LEU n 1 261 PRO n 1 262 LYS n 1 263 GLN n 1 264 HIS n 1 265 HIS n 1 266 HIS n 1 267 HIS n 1 268 HIS n 1 269 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 269 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'socA, Atu5006' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agrobacterium fabrum (strain C58 / ATCC 33970)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176299 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7D447_AGRFC _struct_ref.pdbx_db_accession Q7D447 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQEFSALMPSVANGRFDVAAAAI GTTAKRKETVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTV DAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAYLP KQ ; _struct_ref.pdbx_align_begin 36 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5L9M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 263 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7D447 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 277 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5L9M MET A 1 ? UNP Q7D447 ? ? 'initiating methionine' 15 1 1 5L9M GLY A 2 ? UNP Q7D447 ? ? 'expression tag' 16 2 1 5L9M SER A 3 ? UNP Q7D447 ? ? 'expression tag' 17 3 1 5L9M SER A 4 ? UNP Q7D447 ? ? 'expression tag' 18 4 1 5L9M HIS A 5 ? UNP Q7D447 ? ? 'expression tag' 19 5 1 5L9M HIS A 6 ? UNP Q7D447 ? ? 'expression tag' 20 6 1 5L9M HIS A 7 ? UNP Q7D447 ? ? 'expression tag' 21 7 1 5L9M HIS A 8 ? UNP Q7D447 ? ? 'expression tag' 22 8 1 5L9M HIS A 9 ? UNP Q7D447 ? ? 'expression tag' 23 9 1 5L9M HIS A 10 ? UNP Q7D447 ? ? 'expression tag' 24 10 1 5L9M SER A 11 ? UNP Q7D447 ? ? 'expression tag' 25 11 1 5L9M SER A 12 ? UNP Q7D447 ? ? 'expression tag' 26 12 1 5L9M GLY A 13 ? UNP Q7D447 ? ? 'expression tag' 27 13 1 5L9M LEU A 14 ? UNP Q7D447 ? ? 'expression tag' 28 14 1 5L9M VAL A 15 ? UNP Q7D447 ? ? 'expression tag' 29 15 1 5L9M PRO A 16 ? UNP Q7D447 ? ? 'expression tag' 30 16 1 5L9M ARG A 17 ? UNP Q7D447 ? ? 'expression tag' 31 17 1 5L9M GLY A 18 ? UNP Q7D447 ? ? 'expression tag' 32 18 1 5L9M SER A 19 ? UNP Q7D447 ? ? 'expression tag' 33 19 1 5L9M HIS A 20 ? UNP Q7D447 ? ? 'expression tag' 34 20 1 5L9M MET A 21 ? UNP Q7D447 ? ? 'expression tag' 35 21 1 5L9M HIS A 264 ? UNP Q7D447 ? ? 'expression tag' 278 22 1 5L9M HIS A 265 ? UNP Q7D447 ? ? 'expression tag' 279 23 1 5L9M HIS A 266 ? UNP Q7D447 ? ? 'expression tag' 280 24 1 5L9M HIS A 267 ? UNP Q7D447 ? ? 'expression tag' 281 25 1 5L9M HIS A 268 ? UNP Q7D447 ? ? 'expression tag' 282 26 1 5L9M HIS A 269 ? UNP Q7D447 ? ? 'expression tag' 283 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SNW non-polymer . Deoxyfructosylglutamine santhopine 'C11 H20 N2 O8' 308.285 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L9M _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 4K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-03-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 32.22 _reflns.entry_id 5L9M _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.93 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14862 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.11 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 2.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 4.6569 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0245 _refine.aniso_B[2][2] -11.4226 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 6.7656 _refine.B_iso_max ? _refine.B_iso_mean 42.80 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.9544 _refine.correlation_coeff_Fo_to_Fc_free 0.9443 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5L9M _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.93 _refine.ls_d_res_low 38.21 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14847 _refine.ls_number_reflns_R_free 744 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.5 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1635 _refine.ls_R_factor_R_free 0.1954 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1618 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4YMX _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5L9M _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.257 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1791 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 1895 _refine_hist.d_res_high 1.93 _refine_hist.d_res_low 38.21 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1866 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 1.04 ? 2519 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 615 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 44 ? t_trig_c_planes 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 271 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1845 ? t_it 20.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? 2.90 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 17.04 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 244 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2112 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.93 _refine_ls_shell.d_res_low 2.08 _refine_ls_shell.number_reflns_all 2877 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.number_reflns_R_work 2733 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.percent_reflns_R_free 5.01 _refine_ls_shell.R_factor_all 0.2099 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2337 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2086 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5L9M _struct.title 'Structure of Agrobacterium tumefaciens B6 strain PBP SocA complexed with Deoxyfructosylglutamine (DFG)' _struct.pdbx_descriptor 'Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L9M _struct_keywords.text 'periplasmic binding protein, ABC transporter, Amadori compound, transport protein' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 55 ? LEU A 68 ? GLY A 69 LEU A 82 1 ? 14 HELX_P HELX_P2 AA2 LYS A 71 ? GLU A 73 ? LYS A 85 GLU A 87 5 ? 3 HELX_P HELX_P3 AA3 GLU A 81 ? SER A 83 ? GLU A 95 SER A 97 5 ? 3 HELX_P HELX_P4 AA4 ALA A 84 ? ASN A 91 ? ALA A 98 ASN A 105 1 ? 8 HELX_P HELX_P5 AA5 LYS A 106 ? GLU A 109 ? LYS A 120 GLU A 123 5 ? 4 HELX_P HELX_P6 AA6 ALA A 134 ? LYS A 138 ? ALA A 148 LYS A 152 5 ? 5 HELX_P HELX_P7 AA7 THR A 148 ? PHE A 158 ? THR A 162 PHE A 172 1 ? 11 HELX_P HELX_P8 AA8 ASP A 168 ? GLY A 179 ? ASP A 182 GLY A 193 1 ? 12 HELX_P HELX_P9 AA9 PHE A 188 ? TYR A 198 ? PHE A 202 TYR A 212 1 ? 11 HELX_P HELX_P10 AB1 ASN A 222 ? ASP A 239 ? ASN A 236 ASP A 253 1 ? 18 HELX_P HELX_P11 AB2 GLY A 240 ? PHE A 250 ? GLY A 254 PHE A 264 1 ? 11 HELX_P HELX_P12 AB3 PRO A 256 ? LEU A 260 ? PRO A 270 LEU A 274 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 42 A . ? LYS 56 A PRO 43 A ? PRO 57 A 1 6.77 2 LYS 220 A . ? LYS 234 A GLY 221 A ? GLY 235 A 1 4.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 75 ? GLY A 79 ? VAL A 89 GLY A 93 AA1 2 ILE A 33 ? THR A 37 ? ILE A 47 THR A 51 AA1 3 VAL A 96 ? ALA A 97 ? VAL A 110 ALA A 111 AA1 4 VAL A 217 ? ARG A 219 ? VAL A 231 ARG A 233 AA1 5 VAL A 111 ? PHE A 113 ? VAL A 125 PHE A 127 AA2 1 ASP A 40 ? ALA A 41 ? ASP A 54 ALA A 55 AA2 2 ALA A 45 ? THR A 47 ? ALA A 59 THR A 61 AA2 3 PHE A 53 ? THR A 54 ? PHE A 67 THR A 68 AA3 1 ASP A 162 ? PHE A 166 ? ASP A 176 PHE A 180 AA3 2 ARG A 141 ? VAL A 145 ? ARG A 155 VAL A 159 AA3 3 ALA A 183 ? ASP A 187 ? ALA A 197 ASP A 201 AA3 4 PHE A 121 ? THR A 126 ? PHE A 135 THR A 140 AA3 5 LYS A 202 ? PRO A 208 ? LYS A 216 PRO A 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 76 ? O VAL A 90 N VAL A 35 ? N VAL A 49 AA1 2 3 N GLY A 36 ? N GLY A 50 O VAL A 96 ? O VAL A 110 AA1 3 4 N ALA A 97 ? N ALA A 111 O VAL A 217 ? O VAL A 231 AA1 4 5 O ILE A 218 ? O ILE A 232 N ASP A 112 ? N ASP A 126 AA2 1 2 N ALA A 41 ? N ALA A 55 O ALA A 45 ? O ALA A 59 AA2 2 3 N PHE A 46 ? N PHE A 60 O THR A 54 ? O THR A 68 AA3 1 2 O PHE A 166 ? O PHE A 180 N VAL A 144 ? N VAL A 158 AA3 2 3 N GLY A 143 ? N GLY A 157 O ALA A 183 ? O ALA A 197 AA3 3 4 O LEU A 186 ? O LEU A 200 N SER A 123 ? N SER A 137 AA3 4 5 N LEU A 122 ? N LEU A 136 O ILE A 207 ? O ILE A 221 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SNW 301 ? 17 'binding site for residue SNW A 301' AC2 Software A EDO 303 ? 3 'binding site for residue EDO A 303' AC3 Software A EDO 304 ? 3 'binding site for residue EDO A 304' AC4 Software A EDO 306 ? 1 'binding site for residue EDO A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 MET A 38 ? MET A 52 . ? 1_555 ? 2 AC1 17 PHE A 82 ? PHE A 96 . ? 1_555 ? 3 AC1 17 ALA A 99 ? ALA A 113 . ? 1_555 ? 4 AC1 17 ALA A 100 ? ALA A 114 . ? 1_555 ? 5 AC1 17 ILE A 101 ? ILE A 115 . ? 1_555 ? 6 AC1 17 GLY A 102 ? GLY A 116 . ? 1_555 ? 7 AC1 17 ARG A 107 ? ARG A 121 . ? 1_555 ? 8 AC1 17 ALA A 119 ? ALA A 133 . ? 1_555 ? 9 AC1 17 GLY A 120 ? GLY A 134 . ? 1_555 ? 10 AC1 17 THR A 148 ? THR A 162 . ? 1_555 ? 11 AC1 17 LEU A 149 ? LEU A 163 . ? 1_555 ? 12 AC1 17 GLN A 150 ? GLN A 164 . ? 1_555 ? 13 AC1 17 ASP A 187 ? ASP A 201 . ? 1_555 ? 14 AC1 17 SER A 209 ? SER A 223 . ? 1_555 ? 15 AC1 17 ALA A 212 ? ALA A 226 . ? 1_555 ? 16 AC1 17 HOH H . ? HOH A 401 . ? 1_555 ? 17 AC1 17 HOH H . ? HOH A 406 . ? 1_555 ? 18 AC2 3 GLY A 69 ? GLY A 83 . ? 1_555 ? 19 AC2 3 PHE A 70 ? PHE A 84 . ? 1_555 ? 20 AC2 3 GLN A 74 ? GLN A 88 . ? 1_555 ? 21 AC3 3 THR A 47 ? THR A 61 . ? 1_555 ? 22 AC3 3 THR A 48 ? THR A 62 . ? 1_555 ? 23 AC3 3 ALA A 49 ? ALA A 63 . ? 1_555 ? 24 AC4 1 LYS A 108 ? LYS A 122 . ? 1_555 ? # _atom_sites.entry_id 5L9M _atom_sites.fract_transf_matrix[1][1] 0.025202 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007065 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016038 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023902 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 15 ? ? ? A . n A 1 2 GLY 2 16 ? ? ? A . n A 1 3 SER 3 17 ? ? ? A . n A 1 4 SER 4 18 ? ? ? A . n A 1 5 HIS 5 19 ? ? ? A . n A 1 6 HIS 6 20 ? ? ? A . n A 1 7 HIS 7 21 ? ? ? A . n A 1 8 HIS 8 22 ? ? ? A . n A 1 9 HIS 9 23 ? ? ? A . n A 1 10 HIS 10 24 ? ? ? A . n A 1 11 SER 11 25 ? ? ? A . n A 1 12 SER 12 26 ? ? ? A . n A 1 13 GLY 13 27 ? ? ? A . n A 1 14 LEU 14 28 ? ? ? A . n A 1 15 VAL 15 29 ? ? ? A . n A 1 16 PRO 16 30 ? ? ? A . n A 1 17 ARG 17 31 ? ? ? A . n A 1 18 GLY 18 32 ? ? ? A . n A 1 19 SER 19 33 ? ? ? A . n A 1 20 HIS 20 34 ? ? ? A . n A 1 21 MET 21 35 ? ? ? A . n A 1 22 ASP 22 36 36 ASP ASP A . n A 1 23 ASN 23 37 37 ASN ASN A . n A 1 24 PRO 24 38 38 PRO PRO A . n A 1 25 LEU 25 39 39 LEU LEU A . n A 1 26 GLY 26 40 40 GLY GLY A . n A 1 27 LEU 27 41 41 LEU LEU A . n A 1 28 ILE 28 42 42 ILE ILE A . n A 1 29 ASP 29 43 43 ASP ASP A . n A 1 30 PRO 30 44 44 PRO PRO A . n A 1 31 THR 31 45 45 THR THR A . n A 1 32 THR 32 46 46 THR THR A . n A 1 33 ILE 33 47 47 ILE ILE A . n A 1 34 SER 34 48 48 SER SER A . n A 1 35 VAL 35 49 49 VAL VAL A . n A 1 36 GLY 36 50 50 GLY GLY A . n A 1 37 THR 37 51 51 THR THR A . n A 1 38 MET 38 52 52 MET MET A . n A 1 39 GLY 39 53 53 GLY GLY A . n A 1 40 ASP 40 54 54 ASP ASP A . n A 1 41 ALA 41 55 55 ALA ALA A . n A 1 42 LYS 42 56 56 LYS LYS A . n A 1 43 PRO 43 57 57 PRO PRO A . n A 1 44 TYR 44 58 58 TYR TYR A . n A 1 45 ALA 45 59 59 ALA ALA A . n A 1 46 PHE 46 60 60 PHE PHE A . n A 1 47 THR 47 61 61 THR THR A . n A 1 48 THR 48 62 62 THR THR A . n A 1 49 ALA 49 63 63 ALA ALA A . n A 1 50 ASP 50 64 64 ASP ASP A . n A 1 51 GLY 51 65 65 GLY GLY A . n A 1 52 ASN 52 66 66 ASN ASN A . n A 1 53 PHE 53 67 67 PHE PHE A . n A 1 54 THR 54 68 68 THR THR A . n A 1 55 GLY 55 69 69 GLY GLY A . n A 1 56 PHE 56 70 70 PHE PHE A . n A 1 57 ASP 57 71 71 ASP ASP A . n A 1 58 ILE 58 72 72 ILE ILE A . n A 1 59 GLU 59 73 73 GLU GLU A . n A 1 60 LEU 60 74 74 LEU LEU A . n A 1 61 PHE 61 75 75 PHE PHE A . n A 1 62 LEU 62 76 76 LEU LEU A . n A 1 63 ASN 63 77 77 ASN ASN A . n A 1 64 VAL 64 78 78 VAL VAL A . n A 1 65 ALA 65 79 79 ALA ALA A . n A 1 66 GLY 66 80 80 GLY GLY A . n A 1 67 ARG 67 81 81 ARG ARG A . n A 1 68 LEU 68 82 82 LEU LEU A . n A 1 69 GLY 69 83 83 GLY GLY A . n A 1 70 PHE 70 84 84 PHE PHE A . n A 1 71 LYS 71 85 85 LYS LYS A . n A 1 72 LYS 72 86 86 LYS LYS A . n A 1 73 GLU 73 87 87 GLU GLU A . n A 1 74 GLN 74 88 88 GLN GLN A . n A 1 75 VAL 75 89 89 VAL VAL A . n A 1 76 VAL 76 90 90 VAL VAL A . n A 1 77 PHE 77 91 91 PHE PHE A . n A 1 78 THR 78 92 92 THR THR A . n A 1 79 GLY 79 93 93 GLY GLY A . n A 1 80 GLN 80 94 94 GLN GLN A . n A 1 81 GLU 81 95 95 GLU GLU A . n A 1 82 PHE 82 96 96 PHE PHE A . n A 1 83 SER 83 97 97 SER SER A . n A 1 84 ALA 84 98 98 ALA ALA A . n A 1 85 LEU 85 99 99 LEU LEU A . n A 1 86 MET 86 100 100 MET MET A . n A 1 87 PRO 87 101 101 PRO PRO A . n A 1 88 SER 88 102 102 SER SER A . n A 1 89 VAL 89 103 103 VAL VAL A . n A 1 90 ALA 90 104 104 ALA ALA A . n A 1 91 ASN 91 105 105 ASN ASN A . n A 1 92 GLY 92 106 106 GLY GLY A . n A 1 93 ARG 93 107 107 ARG ARG A . n A 1 94 PHE 94 108 108 PHE PHE A . n A 1 95 ASP 95 109 109 ASP ASP A . n A 1 96 VAL 96 110 110 VAL VAL A . n A 1 97 ALA 97 111 111 ALA ALA A . n A 1 98 ALA 98 112 112 ALA ALA A . n A 1 99 ALA 99 113 113 ALA ALA A . n A 1 100 ALA 100 114 114 ALA ALA A . n A 1 101 ILE 101 115 115 ILE ILE A . n A 1 102 GLY 102 116 116 GLY GLY A . n A 1 103 THR 103 117 117 THR THR A . n A 1 104 THR 104 118 118 THR THR A . n A 1 105 ALA 105 119 119 ALA ALA A . n A 1 106 LYS 106 120 120 LYS LYS A . n A 1 107 ARG 107 121 121 ARG ARG A . n A 1 108 LYS 108 122 122 LYS LYS A . n A 1 109 GLU 109 123 123 GLU GLU A . n A 1 110 THR 110 124 124 THR THR A . n A 1 111 VAL 111 125 125 VAL VAL A . n A 1 112 ASP 112 126 126 ASP ASP A . n A 1 113 PHE 113 127 127 PHE PHE A . n A 1 114 SER 114 128 128 SER SER A . n A 1 115 ASP 115 129 129 ASP ASP A . n A 1 116 GLY 116 130 130 GLY GLY A . n A 1 117 TYR 117 131 131 TYR TYR A . n A 1 118 LEU 118 132 132 LEU LEU A . n A 1 119 ALA 119 133 133 ALA ALA A . n A 1 120 GLY 120 134 134 GLY GLY A . n A 1 121 PHE 121 135 135 PHE PHE A . n A 1 122 LEU 122 136 136 LEU LEU A . n A 1 123 SER 123 137 137 SER SER A . n A 1 124 VAL 124 138 138 VAL VAL A . n A 1 125 LEU 125 139 139 LEU LEU A . n A 1 126 THR 126 140 140 THR THR A . n A 1 127 SER 127 141 141 SER SER A . n A 1 128 GLU 128 142 ? ? ? A . n A 1 129 ALA 129 143 ? ? ? A . n A 1 130 GLY 130 144 ? ? ? A . n A 1 131 ILE 131 145 ? ? ? A . n A 1 132 THR 132 146 146 THR THR A . n A 1 133 ASP 133 147 147 ASP ASP A . n A 1 134 ALA 134 148 148 ALA ALA A . n A 1 135 ALA 135 149 149 ALA ALA A . n A 1 136 GLY 136 150 150 GLY GLY A . n A 1 137 LEU 137 151 151 LEU LEU A . n A 1 138 LYS 138 152 152 LYS LYS A . n A 1 139 GLY 139 153 153 GLY GLY A . n A 1 140 LYS 140 154 154 LYS LYS A . n A 1 141 ARG 141 155 155 ARG ARG A . n A 1 142 LEU 142 156 156 LEU LEU A . n A 1 143 GLY 143 157 157 GLY GLY A . n A 1 144 VAL 144 158 158 VAL VAL A . n A 1 145 VAL 145 159 159 VAL VAL A . n A 1 146 GLN 146 160 160 GLN GLN A . n A 1 147 GLY 147 161 161 GLY GLY A . n A 1 148 THR 148 162 162 THR THR A . n A 1 149 LEU 149 163 163 LEU LEU A . n A 1 150 GLN 150 164 164 GLN GLN A . n A 1 151 GLU 151 165 165 GLU GLU A . n A 1 152 ILE 152 166 166 ILE ILE A . n A 1 153 TYR 153 167 167 TYR TYR A . n A 1 154 ALA 154 168 168 ALA ALA A . n A 1 155 GLU 155 169 169 GLU GLU A . n A 1 156 LYS 156 170 170 LYS LYS A . n A 1 157 ASN 157 171 171 ASN ASN A . n A 1 158 PHE 158 172 172 PHE PHE A . n A 1 159 ALA 159 173 173 ALA ALA A . n A 1 160 GLY 160 174 174 GLY GLY A . n A 1 161 THR 161 175 175 THR THR A . n A 1 162 ASP 162 176 176 ASP ASP A . n A 1 163 LEU 163 177 177 LEU LEU A . n A 1 164 VAL 164 178 178 VAL VAL A . n A 1 165 LYS 165 179 179 LYS LYS A . n A 1 166 PHE 166 180 180 PHE PHE A . n A 1 167 PRO 167 181 181 PRO PRO A . n A 1 168 ASP 168 182 182 ASP ASP A . n A 1 169 ASN 169 183 183 ASN ASN A . n A 1 170 ASN 170 184 184 ASN ASN A . n A 1 171 SER 171 185 185 SER SER A . n A 1 172 ALA 172 186 186 ALA ALA A . n A 1 173 VAL 173 187 187 VAL VAL A . n A 1 174 SER 174 188 188 SER SER A . n A 1 175 ALA 175 189 189 ALA ALA A . n A 1 176 LEU 176 190 190 LEU LEU A . n A 1 177 ASN 177 191 191 ASN ASN A . n A 1 178 ASN 178 192 192 ASN ASN A . n A 1 179 GLY 179 193 193 GLY GLY A . n A 1 180 THR 180 194 194 THR THR A . n A 1 181 VAL 181 195 195 VAL VAL A . n A 1 182 ASP 182 196 196 ASP ASP A . n A 1 183 ALA 183 197 197 ALA ALA A . n A 1 184 HIS 184 198 198 HIS HIS A . n A 1 185 PHE 185 199 199 PHE PHE A . n A 1 186 LEU 186 200 200 LEU LEU A . n A 1 187 ASP 187 201 201 ASP ASP A . n A 1 188 PHE 188 202 202 PHE PHE A . n A 1 189 GLU 189 203 203 GLU GLU A . n A 1 190 ALA 190 204 204 ALA ALA A . n A 1 191 ALA 191 205 205 ALA ALA A . n A 1 192 LYS 192 206 206 LYS LYS A . n A 1 193 ASP 193 207 207 ASP ASP A . n A 1 194 TYR 194 208 208 TYR TYR A . n A 1 195 SER 195 209 209 SER SER A . n A 1 196 ALA 196 210 210 ALA ALA A . n A 1 197 ARG 197 211 211 ARG ARG A . n A 1 198 TYR 198 212 212 TYR TYR A . n A 1 199 PRO 199 213 213 PRO PRO A . n A 1 200 ALA 200 214 214 ALA ALA A . n A 1 201 LEU 201 215 215 LEU LEU A . n A 1 202 LYS 202 216 216 LYS LYS A . n A 1 203 ILE 203 217 217 ILE ILE A . n A 1 204 ALA 204 218 218 ALA ALA A . n A 1 205 VAL 205 219 219 VAL VAL A . n A 1 206 ASN 206 220 220 ASN ASN A . n A 1 207 ILE 207 221 221 ILE ILE A . n A 1 208 PRO 208 222 222 PRO PRO A . n A 1 209 SER 209 223 223 SER SER A . n A 1 210 PHE 210 224 224 PHE PHE A . n A 1 211 ASP 211 225 225 ASP ASP A . n A 1 212 ALA 212 226 226 ALA ALA A . n A 1 213 PRO 213 227 227 PRO PRO A . n A 1 214 ALA 214 228 228 ALA ALA A . n A 1 215 GLY 215 229 229 GLY GLY A . n A 1 216 PHE 216 230 230 PHE PHE A . n A 1 217 VAL 217 231 231 VAL VAL A . n A 1 218 ILE 218 232 232 ILE ILE A . n A 1 219 ARG 219 233 233 ARG ARG A . n A 1 220 LYS 220 234 234 LYS LYS A . n A 1 221 GLY 221 235 235 GLY GLY A . n A 1 222 ASN 222 236 236 ASN ASN A . n A 1 223 ASP 223 237 237 ASP ASP A . n A 1 224 ALA 224 238 238 ALA ALA A . n A 1 225 LEU 225 239 239 LEU LEU A . n A 1 226 ARG 226 240 240 ARG ARG A . n A 1 227 ASN 227 241 241 ASN ASN A . n A 1 228 ALA 228 242 242 ALA ALA A . n A 1 229 LEU 229 243 243 LEU LEU A . n A 1 230 ASP 230 244 244 ASP ASP A . n A 1 231 LYS 231 245 245 LYS LYS A . n A 1 232 GLY 232 246 246 GLY GLY A . n A 1 233 LEU 233 247 247 LEU LEU A . n A 1 234 LYS 234 248 248 LYS LYS A . n A 1 235 GLU 235 249 249 GLU GLU A . n A 1 236 ALA 236 250 250 ALA ALA A . n A 1 237 MET 237 251 251 MET MET A . n A 1 238 GLN 238 252 252 GLN GLN A . n A 1 239 ASP 239 253 253 ASP ASP A . n A 1 240 GLY 240 254 254 GLY GLY A . n A 1 241 THR 241 255 255 THR THR A . n A 1 242 TRP 242 256 256 TRP TRP A . n A 1 243 LYS 243 257 257 LYS LYS A . n A 1 244 LYS 244 258 258 LYS LYS A . n A 1 245 LEU 245 259 259 LEU LEU A . n A 1 246 HIS 246 260 260 HIS HIS A . n A 1 247 GLU 247 261 261 GLU GLU A . n A 1 248 LYS 248 262 262 LYS LYS A . n A 1 249 TRP 249 263 263 TRP TRP A . n A 1 250 PHE 250 264 264 PHE PHE A . n A 1 251 PRO 251 265 265 PRO PRO A . n A 1 252 GLY 252 266 266 GLY GLY A . n A 1 253 THR 253 267 267 THR THR A . n A 1 254 PRO 254 268 268 PRO PRO A . n A 1 255 MET 255 269 269 MET MET A . n A 1 256 PRO 256 270 270 PRO PRO A . n A 1 257 ALA 257 271 271 ALA ALA A . n A 1 258 ALA 258 272 272 ALA ALA A . n A 1 259 TYR 259 273 273 TYR TYR A . n A 1 260 LEU 260 274 274 LEU LEU A . n A 1 261 PRO 261 275 275 PRO PRO A . n A 1 262 LYS 262 276 276 LYS LYS A . n A 1 263 GLN 263 277 ? ? ? A . n A 1 264 HIS 264 278 ? ? ? A . n A 1 265 HIS 265 279 ? ? ? A . n A 1 266 HIS 266 280 ? ? ? A . n A 1 267 HIS 267 281 ? ? ? A . n A 1 268 HIS 268 282 ? ? ? A . n A 1 269 HIS 269 283 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SNW 1 301 1 SNW DRG A . C 3 EDO 1 302 2 EDO EDO A . D 3 EDO 1 303 3 EDO EDO A . E 3 EDO 1 304 4 EDO EDO A . F 3 EDO 1 305 5 EDO EDO A . G 3 EDO 1 306 6 EDO EDO A . H 4 HOH 1 401 23 HOH HOH A . H 4 HOH 2 402 42 HOH HOH A . H 4 HOH 3 403 13 HOH HOH A . H 4 HOH 4 404 25 HOH HOH A . H 4 HOH 5 405 79 HOH HOH A . H 4 HOH 6 406 75 HOH HOH A . H 4 HOH 7 407 36 HOH HOH A . H 4 HOH 8 408 15 HOH HOH A . H 4 HOH 9 409 60 HOH HOH A . H 4 HOH 10 410 4 HOH HOH A . H 4 HOH 11 411 3 HOH HOH A . H 4 HOH 12 412 58 HOH HOH A . H 4 HOH 13 413 1 HOH HOH A . H 4 HOH 14 414 30 HOH HOH A . H 4 HOH 15 415 31 HOH HOH A . H 4 HOH 16 416 20 HOH HOH A . H 4 HOH 17 417 6 HOH HOH A . H 4 HOH 18 418 19 HOH HOH A . H 4 HOH 19 419 2 HOH HOH A . H 4 HOH 20 420 84 HOH HOH A . H 4 HOH 21 421 45 HOH HOH A . H 4 HOH 22 422 29 HOH HOH A . H 4 HOH 23 423 83 HOH HOH A . H 4 HOH 24 424 43 HOH HOH A . H 4 HOH 25 425 14 HOH HOH A . H 4 HOH 26 426 24 HOH HOH A . H 4 HOH 27 427 74 HOH HOH A . H 4 HOH 28 428 27 HOH HOH A . H 4 HOH 29 429 12 HOH HOH A . H 4 HOH 30 430 16 HOH HOH A . H 4 HOH 31 431 38 HOH HOH A . H 4 HOH 32 432 48 HOH HOH A . H 4 HOH 33 433 77 HOH HOH A . H 4 HOH 34 434 39 HOH HOH A . H 4 HOH 35 435 35 HOH HOH A . H 4 HOH 36 436 59 HOH HOH A . H 4 HOH 37 437 11 HOH HOH A . H 4 HOH 38 438 9 HOH HOH A . H 4 HOH 39 439 10 HOH HOH A . H 4 HOH 40 440 61 HOH HOH A . H 4 HOH 41 441 34 HOH HOH A . H 4 HOH 42 442 8 HOH HOH A . H 4 HOH 43 443 5 HOH HOH A . H 4 HOH 44 444 32 HOH HOH A . H 4 HOH 45 445 49 HOH HOH A . H 4 HOH 46 446 18 HOH HOH A . H 4 HOH 47 447 44 HOH HOH A . H 4 HOH 48 448 22 HOH HOH A . H 4 HOH 49 449 90 HOH HOH A . H 4 HOH 50 450 78 HOH HOH A . H 4 HOH 51 451 7 HOH HOH A . H 4 HOH 52 452 76 HOH HOH A . H 4 HOH 53 453 89 HOH HOH A . H 4 HOH 54 454 73 HOH HOH A . H 4 HOH 55 455 82 HOH HOH A . H 4 HOH 56 456 65 HOH HOH A . H 4 HOH 57 457 80 HOH HOH A . H 4 HOH 58 458 69 HOH HOH A . H 4 HOH 59 459 81 HOH HOH A . H 4 HOH 60 460 87 HOH HOH A . H 4 HOH 61 461 71 HOH HOH A . H 4 HOH 62 462 86 HOH HOH A . H 4 HOH 63 463 72 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 780 ? 1 MORE 9 ? 1 'SSA (A^2)' 10720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-11-16 3 'Structure model' 1 2 2017-09-06 4 'Structure model' 1 3 2018-10-31 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 4 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_database_PDB_obs_spr 3 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_database_status.status_code' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.0277 _pdbx_refine_tls.origin_y 69.0350 _pdbx_refine_tls.origin_z -14.5335 _pdbx_refine_tls.T[1][1] -0.3394 _pdbx_refine_tls.T[2][2] -0.2904 _pdbx_refine_tls.T[3][3] -0.3225 _pdbx_refine_tls.T[1][2] -0.0277 _pdbx_refine_tls.T[1][3] -0.0161 _pdbx_refine_tls.T[2][3] -0.0467 _pdbx_refine_tls.L[1][1] 2.1992 _pdbx_refine_tls.L[2][2] 2.2281 _pdbx_refine_tls.L[3][3] 4.1742 _pdbx_refine_tls.L[1][2] -0.3782 _pdbx_refine_tls.L[1][3] 0.3804 _pdbx_refine_tls.L[2][3] -0.5210 _pdbx_refine_tls.S[1][1] 0.0280 _pdbx_refine_tls.S[1][2] -0.3009 _pdbx_refine_tls.S[1][3] 0.0681 _pdbx_refine_tls.S[2][1] 0.0255 _pdbx_refine_tls.S[2][2] -0.0858 _pdbx_refine_tls.S[2][3] 0.1479 _pdbx_refine_tls.S[3][1] 0.1211 _pdbx_refine_tls.S[3][2] -0.2881 _pdbx_refine_tls.S[3][3] 0.0578 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|* }' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.8.0 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 113 ? ? -169.33 57.05 2 1 PHE A 172 ? ? -106.92 49.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 15 ? A MET 1 2 1 Y 1 A GLY 16 ? A GLY 2 3 1 Y 1 A SER 17 ? A SER 3 4 1 Y 1 A SER 18 ? A SER 4 5 1 Y 1 A HIS 19 ? A HIS 5 6 1 Y 1 A HIS 20 ? A HIS 6 7 1 Y 1 A HIS 21 ? A HIS 7 8 1 Y 1 A HIS 22 ? A HIS 8 9 1 Y 1 A HIS 23 ? A HIS 9 10 1 Y 1 A HIS 24 ? A HIS 10 11 1 Y 1 A SER 25 ? A SER 11 12 1 Y 1 A SER 26 ? A SER 12 13 1 Y 1 A GLY 27 ? A GLY 13 14 1 Y 1 A LEU 28 ? A LEU 14 15 1 Y 1 A VAL 29 ? A VAL 15 16 1 Y 1 A PRO 30 ? A PRO 16 17 1 Y 1 A ARG 31 ? A ARG 17 18 1 Y 1 A GLY 32 ? A GLY 18 19 1 Y 1 A SER 33 ? A SER 19 20 1 Y 1 A HIS 34 ? A HIS 20 21 1 Y 1 A MET 35 ? A MET 21 22 1 Y 1 A GLU 142 ? A GLU 128 23 1 Y 1 A ALA 143 ? A ALA 129 24 1 Y 1 A GLY 144 ? A GLY 130 25 1 Y 1 A ILE 145 ? A ILE 131 26 1 Y 1 A GLN 277 ? A GLN 263 27 1 Y 1 A HIS 278 ? A HIS 264 28 1 Y 1 A HIS 279 ? A HIS 265 29 1 Y 1 A HIS 280 ? A HIS 266 30 1 Y 1 A HIS 281 ? A HIS 267 31 1 Y 1 A HIS 282 ? A HIS 268 32 1 Y 1 A HIS 283 ? A HIS 269 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-12-BSV8-0003-01 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 Deoxyfructosylglutamine SNW 3 1,2-ETHANEDIOL EDO 4 water HOH #