HEADER HYDROLASE 13-JUN-16 5L9Y TITLE CRYSTAL STRUCTURE OF HUMAN HEPARANASE, IN COMPLEX WITH GLUCURONIC ACID TITLE 2 CONFIGURED AZIRIDINE PROBE JJB355 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDO-GLUCORONIDASE,HEPARANASE-1,HPA1; COMPND 5 EC: 3.2.1.166; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEPARANASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ENDO-GLUCORONIDASE,HEPARANASE-1,HPA1; COMPND 11 EC: 3.2.1.166; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HEPARANASE, PROBE, GH79, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WU,Y.JIN,G.J.DAVIES REVDAT 5 10-JAN-24 5L9Y 1 HETSYN LINK REVDAT 4 29-JUL-20 5L9Y 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 06-SEP-17 5L9Y 1 JRNL REVDAT 2 14-JUN-17 5L9Y 1 JRNL REVDAT 1 31-MAY-17 5L9Y 0 JRNL AUTH L.WU,J.JIANG,Y.JIN,W.W.KALLEMEIJN,C.L.KUO,M.ARTOLA,W.DAI, JRNL AUTH 2 C.VAN ELK,M.VAN EIJK,G.A.VAN DER MAREL,J.D.C.CODEE, JRNL AUTH 3 B.I.FLOREA,J.M.F.G.AERTS,H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL ACTIVITY-BASED PROBES FOR FUNCTIONAL INTERROGATION OF JRNL TITL 2 RETAINING BETA-GLUCURONIDASES. JRNL REF NAT. CHEM. BIOL. V. 13 867 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28581485 JRNL DOI 10.1038/NCHEMBIO.2395 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 39085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.499 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3822 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3693 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5173 ; 1.526 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8511 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;35.565 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;13.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4198 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 877 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 2.632 ; 3.684 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1834 ; 2.629 ; 3.681 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2292 ; 3.780 ; 5.506 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2293 ; 3.781 ; 5.509 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1987 ; 3.144 ; 4.182 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1987 ; 3.144 ; 4.182 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2882 ; 4.930 ; 6.090 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4277 ; 6.825 ;44.510 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4278 ; 6.824 ;44.510 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 78.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5E8M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.5, 0.1 M MGCL2, 17% REMARK 280 PEG3350, 200:500 NL PROTEIN:WELL RATIO, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 155 REMARK 465 PRO A 156 REMARK 465 GLY A 157 REMARK 465 LYS A 158 REMARK 465 LYS A 159 REMARK 465 ASP B 33 REMARK 465 PRO B 34 REMARK 465 GLY B 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 343 CD GLU A 343 OE2 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 258 78.78 -104.77 REMARK 500 THR A 333 -56.84 -130.21 REMARK 500 LEU A 354 12.45 56.43 REMARK 500 LEU A 419 -158.17 -116.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 898 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 899 DISTANCE = 6.89 ANGSTROMS DBREF 5L9Y A 158 543 UNP Q9Y251 HPSE_HUMAN 158 543 DBREF 5L9Y B 36 109 UNP Q9Y251 HPSE_HUMAN 36 109 SEQADV 5L9Y ASP A 155 UNP Q9Y251 EXPRESSION TAG SEQADV 5L9Y PRO A 156 UNP Q9Y251 EXPRESSION TAG SEQADV 5L9Y GLY A 157 UNP Q9Y251 EXPRESSION TAG SEQADV 5L9Y ARG A 307 UNP Q9Y251 LYS 307 CONFLICT SEQADV 5L9Y ASP B 33 UNP Q9Y251 EXPRESSION TAG SEQADV 5L9Y PRO B 34 UNP Q9Y251 EXPRESSION TAG SEQADV 5L9Y GLY B 35 UNP Q9Y251 EXPRESSION TAG SEQRES 1 A 389 ASP PRO GLY LYS LYS PHE LYS ASN SER THR TYR SER ARG SEQRES 2 A 389 SER SER VAL ASP VAL LEU TYR THR PHE ALA ASN CYS SER SEQRES 3 A 389 GLY LEU ASP LEU ILE PHE GLY LEU ASN ALA LEU LEU ARG SEQRES 4 A 389 THR ALA ASP LEU GLN TRP ASN SER SER ASN ALA GLN LEU SEQRES 5 A 389 LEU LEU ASP TYR CYS SER SER LYS GLY TYR ASN ILE SER SEQRES 6 A 389 TRP GLU LEU GLY ASN GLU PRO ASN SER PHE LEU LYS LYS SEQRES 7 A 389 ALA ASP ILE PHE ILE ASN GLY SER GLN LEU GLY GLU ASP SEQRES 8 A 389 PHE ILE GLN LEU HIS LYS LEU LEU ARG LYS SER THR PHE SEQRES 9 A 389 LYS ASN ALA LYS LEU TYR GLY PRO ASP VAL GLY GLN PRO SEQRES 10 A 389 ARG ARG LYS THR ALA LYS MET LEU LYS SER PHE LEU LYS SEQRES 11 A 389 ALA GLY GLY GLU VAL ILE ASP SER VAL THR TRP HIS HIS SEQRES 12 A 389 TYR TYR LEU ASN GLY ARG THR ALA THR ARG GLU ASP PHE SEQRES 13 A 389 LEU ASN PRO ASP VAL LEU ASP ILE PHE ILE SER SER VAL SEQRES 14 A 389 GLN LYS VAL PHE GLN VAL VAL GLU SER THR ARG PRO GLY SEQRES 15 A 389 LYS LYS VAL TRP LEU GLY GLU THR SER SER ALA TYR GLY SEQRES 16 A 389 GLY GLY ALA PRO LEU LEU SER ASP THR PHE ALA ALA GLY SEQRES 17 A 389 PHE MET TRP LEU ASP LYS LEU GLY LEU SER ALA ARG MET SEQRES 18 A 389 GLY ILE GLU VAL VAL MET ARG GLN VAL PHE PHE GLY ALA SEQRES 19 A 389 GLY ASN TYR HIS LEU VAL ASP GLU ASN PHE ASP PRO LEU SEQRES 20 A 389 PRO ASP TYR TRP LEU SER LEU LEU PHE LYS LYS LEU VAL SEQRES 21 A 389 GLY THR LYS VAL LEU MET ALA SER VAL GLN GLY SER LYS SEQRES 22 A 389 ARG ARG LYS LEU ARG VAL TYR LEU HIS CYS THR ASN THR SEQRES 23 A 389 ASP ASN PRO ARG TYR LYS GLU GLY ASP LEU THR LEU TYR SEQRES 24 A 389 ALA ILE ASN LEU HIS ASN VAL THR LYS TYR LEU ARG LEU SEQRES 25 A 389 PRO TYR PRO PHE SER ASN LYS GLN VAL ASP LYS TYR LEU SEQRES 26 A 389 LEU ARG PRO LEU GLY PRO HIS GLY LEU LEU SER LYS SER SEQRES 27 A 389 VAL GLN LEU ASN GLY LEU THR LEU LYS MET VAL ASP ASP SEQRES 28 A 389 GLN THR LEU PRO PRO LEU MET GLU LYS PRO LEU ARG PRO SEQRES 29 A 389 GLY SER SER LEU GLY LEU PRO ALA PHE SER TYR SER PHE SEQRES 30 A 389 PHE VAL ILE ARG ASN ALA LYS VAL ALA ALA CYS ILE SEQRES 1 B 77 ASP PRO GLY GLN ASP VAL VAL ASP LEU ASP PHE PHE THR SEQRES 2 B 77 GLN GLU PRO LEU HIS LEU VAL SER PRO SER PHE LEU SER SEQRES 3 B 77 VAL THR ILE ASP ALA ASN LEU ALA THR ASP PRO ARG PHE SEQRES 4 B 77 LEU ILE LEU LEU GLY SER PRO LYS LEU ARG THR LEU ALA SEQRES 5 B 77 ARG GLY LEU SER PRO ALA TYR LEU ARG PHE GLY GLY THR SEQRES 6 B 77 LYS THR ASP PHE LEU ILE PHE ASP PRO LYS LYS GLU HET NAG C 1 14 HET FUC C 2 10 HET NAG A 601 14 HET NAG A 602 14 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET 6S6 A 608 24 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM 6S6 (1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8- HETNAM 2 6S6 AZIDOOCTYLAMINO)-3,4,5,6-TETRAKIS(OXIDANYL) HETNAM 3 6S6 CYCLOHEXANE-1-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 6S6 C15 H28 N4 O6 FORMUL 10 HOH *227(H2 O) HELIX 1 AA1 SER A 166 SER A 180 1 15 HELIX 2 AA2 SER A 201 GLY A 215 1 15 HELIX 3 AA3 GLU A 225 ASN A 227 5 3 HELIX 4 AA4 SER A 228 ASP A 234 1 7 HELIX 5 AA5 ASN A 238 LYS A 255 1 18 HELIX 6 AA6 ARG A 272 GLY A 287 1 16 HELIX 7 AA7 THR A 306 LEU A 311 1 6 HELIX 8 AA8 ASN A 312 SER A 332 1 21 HELIX 9 AA9 THR A 358 ALA A 360 5 3 HELIX 10 AB1 ALA A 361 GLY A 376 1 16 HELIX 11 AB2 LEU A 401 LEU A 413 1 13 HELIX 12 AB3 HIS A 486 SER A 490 5 5 HELIX 13 AB4 ASP B 62 ASP B 68 5 7 HELIX 14 AB5 ARG B 70 SER B 77 1 8 HELIX 15 AB6 SER B 77 LEU B 87 1 11 HELIX 16 AB7 GLY B 96 ASP B 100 5 5 SHEET 1 AA1 2 SER A 163 TYR A 165 0 SHEET 2 AA1 2 LEU B 102 PHE B 104 1 O ILE B 103 N SER A 163 SHEET 1 AA2 9 LEU A 182 LEU A 188 0 SHEET 2 AA2 9 SER A 219 LEU A 222 1 O SER A 219 N PHE A 186 SHEET 3 AA2 9 LEU A 263 VAL A 268 1 O TYR A 264 N TRP A 220 SHEET 4 AA2 9 SER A 292 ASN A 301 1 O HIS A 296 N VAL A 268 SHEET 5 AA2 9 VAL A 339 TYR A 348 1 O TRP A 340 N VAL A 293 SHEET 6 AA2 9 VAL A 379 ARG A 382 1 O VAL A 379 N LEU A 341 SHEET 7 AA2 9 LEU B 57 ILE B 61 1 O SER B 58 N VAL A 380 SHEET 8 AA2 9 ALA B 90 PHE B 94 1 O ARG B 93 N ILE B 61 SHEET 9 AA2 9 LEU A 182 LEU A 188 1 N ILE A 185 O PHE B 94 SHEET 1 AA3 4 LEU A 498 THR A 499 0 SHEET 2 AA3 4 VAL A 493 LEU A 495 -1 N LEU A 495 O LEU A 498 SHEET 3 AA3 4 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA3 4 LYS A 514 PRO A 515 -1 O LYS A 514 N LYS A 477 SHEET 1 AA4 8 LEU A 498 THR A 499 0 SHEET 2 AA4 8 VAL A 493 LEU A 495 -1 N LEU A 495 O LEU A 498 SHEET 3 AA4 8 VAL A 475 PRO A 482 -1 N ARG A 481 O GLN A 494 SHEET 4 AA4 8 SER A 528 ILE A 534 -1 O TYR A 529 N LEU A 480 SHEET 5 AA4 8 LEU A 450 ASN A 456 -1 N ASN A 456 O SER A 528 SHEET 6 AA4 8 LEU A 431 THR A 438 -1 N HIS A 436 O THR A 451 SHEET 7 AA4 8 VAL A 414 VAL A 418 -1 N GLY A 415 O CYS A 437 SHEET 8 AA4 8 HIS B 50 LEU B 51 -1 O HIS B 50 N VAL A 418 SHEET 1 AA5 4 MET A 420 VAL A 423 0 SHEET 2 AA5 4 VAL B 38 PHE B 44 -1 O ASP B 42 N SER A 422 SHEET 3 AA5 4 LYS A 462 ARG A 465 1 N TYR A 463 O VAL B 39 SHEET 4 AA5 4 LEU A 522 LEU A 524 -1 O LEU A 522 N LEU A 464 SSBOND 1 CYS A 437 CYS A 542 1555 1555 2.03 LINK ND2 ASN A 200 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 238 C1 NAG A 602 1555 1555 1.45 LINK OE2 GLU A 343 C1 6S6 A 608 1555 1555 1.44 LINK ND2 ASN A 459 C1 NAG C 1 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.45 CISPEP 1 GLY A 265 PRO A 266 0 0.84 CISPEP 2 GLN A 383 VAL A 384 0 -7.41 CISPEP 3 TYR A 468 PRO A 469 0 4.69 CISPEP 4 GLY A 484 PRO A 485 0 13.44 CISPEP 5 SER B 88 PRO B 89 0 -4.27 CRYST1 46.430 71.260 78.910 90.00 94.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021538 0.000000 0.001854 0.00000 SCALE2 0.000000 0.014033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012720 0.00000