HEADER HYDROLASE 13-JUN-16 5LA7 TITLE CRYSTAL STRUCTURE OF HUMAN PROHEPARANASE, IN COMPLEX WITH GLUCURONIC TITLE 2 ACID CONFIGURED AZIRIDINE PROBE JJB355 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDO-GLUCORONIDASE,HEPARANASE-1,HPA1; COMPND 5 EC: 3.2.1.166; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPSE, HEP, HPA, HPA1, HPR1, HPSE1, HSE1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HYDROLASE, HEPARANASE, PROENZYME, GH79 EXPDTA X-RAY DIFFRACTION AUTHOR L.WU,Y.JIN,G.J.DAVIES REVDAT 5 10-JAN-24 5LA7 1 HETSYN LINK REVDAT 4 29-JUL-20 5LA7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 06-SEP-17 5LA7 1 JRNL REVDAT 2 14-JUN-17 5LA7 1 JRNL REVDAT 1 31-MAY-17 5LA7 0 JRNL AUTH L.WU,J.JIANG,Y.JIN,W.W.KALLEMEIJN,C.L.KUO,M.ARTOLA,W.DAI, JRNL AUTH 2 C.VAN ELK,M.VAN EIJK,G.A.VAN DER MAREL,J.D.C.CODEE, JRNL AUTH 3 B.I.FLOREA,J.M.F.G.AERTS,H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL ACTIVITY-BASED PROBES FOR FUNCTIONAL INTERROGATION OF JRNL TITL 2 RETAINING BETA-GLUCURONIDASES. JRNL REF NAT. CHEM. BIOL. V. 13 867 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28581485 JRNL DOI 10.1038/NCHEMBIO.2395 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : -1.96000 REMARK 3 B33 (A**2) : 2.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4317 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4143 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5841 ; 1.607 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9556 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 6.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.971 ;23.583 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;15.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4728 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2036 ; 3.092 ; 4.309 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2035 ; 3.086 ; 4.308 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2545 ; 4.324 ; 6.452 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2546 ; 4.323 ; 6.453 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2281 ; 3.518 ; 4.839 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2281 ; 3.506 ; 4.840 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3297 ; 5.344 ; 7.071 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4853 ; 6.996 ;51.191 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4854 ; 6.996 ;51.191 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5E8M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SUCCINATE PH 7.0 17% PEG3350 REMARK 280 1:250 DILUTION SEED STOCK SEED CRYSTALS GROWN IN 0.2 M AMMONIUM REMARK 280 NITRATE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 343 CD GLU A 343 OE2 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 395 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 196 34.64 -96.10 REMARK 500 ALA A 233 11.02 -142.78 REMARK 500 GLU A 343 119.92 -172.36 REMARK 500 LEU A 419 -160.33 -109.35 REMARK 500 LYS A 427 47.32 -99.77 REMARK 500 PRO A 469 30.98 -93.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LA7 A 36 543 UNP Q9Y251 HPSE_HUMAN 36 543 SEQADV 5LA7 GLY A 35 UNP Q9Y251 EXPRESSION TAG SEQADV 5LA7 ARG A 307 UNP Q9Y251 LYS 307 VARIANT SEQRES 1 A 509 GLY GLN ASP VAL VAL ASP LEU ASP PHE PHE THR GLN GLU SEQRES 2 A 509 PRO LEU HIS LEU VAL SER PRO SER PHE LEU SER VAL THR SEQRES 3 A 509 ILE ASP ALA ASN LEU ALA THR ASP PRO ARG PHE LEU ILE SEQRES 4 A 509 LEU LEU GLY SER PRO LYS LEU ARG THR LEU ALA ARG GLY SEQRES 5 A 509 LEU SER PRO ALA TYR LEU ARG PHE GLY GLY THR LYS THR SEQRES 6 A 509 ASP PHE LEU ILE PHE ASP PRO LYS LYS GLU SER THR PHE SEQRES 7 A 509 GLU GLU ARG SER TYR TRP GLN SER GLN VAL ASN GLN ASP SEQRES 8 A 509 ILE CYS LYS TYR GLY SER ILE PRO PRO ASP VAL GLU GLU SEQRES 9 A 509 LYS LEU ARG LEU GLU TRP PRO TYR GLN GLU GLN LEU LEU SEQRES 10 A 509 LEU ARG GLU HIS TYR GLN LYS LYS PHE LYS ASN SER THR SEQRES 11 A 509 TYR SER ARG SER SER VAL ASP VAL LEU TYR THR PHE ALA SEQRES 12 A 509 ASN CYS SER GLY LEU ASP LEU ILE PHE GLY LEU ASN ALA SEQRES 13 A 509 LEU LEU ARG THR ALA ASP LEU GLN TRP ASN SER SER ASN SEQRES 14 A 509 ALA GLN LEU LEU LEU ASP TYR CYS SER SER LYS GLY TYR SEQRES 15 A 509 ASN ILE SER TRP GLU LEU GLY ASN GLU PRO ASN SER PHE SEQRES 16 A 509 LEU LYS LYS ALA ASP ILE PHE ILE ASN GLY SER GLN LEU SEQRES 17 A 509 GLY GLU ASP PHE ILE GLN LEU HIS LYS LEU LEU ARG LYS SEQRES 18 A 509 SER THR PHE LYS ASN ALA LYS LEU TYR GLY PRO ASP VAL SEQRES 19 A 509 GLY GLN PRO ARG ARG LYS THR ALA LYS MET LEU LYS SER SEQRES 20 A 509 PHE LEU LYS ALA GLY GLY GLU VAL ILE ASP SER VAL THR SEQRES 21 A 509 TRP HIS HIS TYR TYR LEU ASN GLY ARG THR ALA THR ARG SEQRES 22 A 509 GLU ASP PHE LEU ASN PRO ASP VAL LEU ASP ILE PHE ILE SEQRES 23 A 509 SER SER VAL GLN LYS VAL PHE GLN VAL VAL GLU SER THR SEQRES 24 A 509 ARG PRO GLY LYS LYS VAL TRP LEU GLY GLU THR SER SER SEQRES 25 A 509 ALA TYR GLY GLY GLY ALA PRO LEU LEU SER ASP THR PHE SEQRES 26 A 509 ALA ALA GLY PHE MET TRP LEU ASP LYS LEU GLY LEU SER SEQRES 27 A 509 ALA ARG MET GLY ILE GLU VAL VAL MET ARG GLN VAL PHE SEQRES 28 A 509 PHE GLY ALA GLY ASN TYR HIS LEU VAL ASP GLU ASN PHE SEQRES 29 A 509 ASP PRO LEU PRO ASP TYR TRP LEU SER LEU LEU PHE LYS SEQRES 30 A 509 LYS LEU VAL GLY THR LYS VAL LEU MET ALA SER VAL GLN SEQRES 31 A 509 GLY SER LYS ARG ARG LYS LEU ARG VAL TYR LEU HIS CYS SEQRES 32 A 509 THR ASN THR ASP ASN PRO ARG TYR LYS GLU GLY ASP LEU SEQRES 33 A 509 THR LEU TYR ALA ILE ASN LEU HIS ASN VAL THR LYS TYR SEQRES 34 A 509 LEU ARG LEU PRO TYR PRO PHE SER ASN LYS GLN VAL ASP SEQRES 35 A 509 LYS TYR LEU LEU ARG PRO LEU GLY PRO HIS GLY LEU LEU SEQRES 36 A 509 SER LYS SER VAL GLN LEU ASN GLY LEU THR LEU LYS MET SEQRES 37 A 509 VAL ASP ASP GLN THR LEU PRO PRO LEU MET GLU LYS PRO SEQRES 38 A 509 LEU ARG PRO GLY SER SER LEU GLY LEU PRO ALA PHE SER SEQRES 39 A 509 TYR SER PHE PHE VAL ILE ARG ASN ALA LYS VAL ALA ALA SEQRES 40 A 509 CYS ILE HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 4 HET 6S6 A 613 24 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM 6S6 (1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8- HETNAM 2 6S6 AZIDOOCTYLAMINO)-3,4,5,6-TETRAKIS(OXIDANYL) HETNAM 3 6S6 CYCLOHEXANE-1-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 6 EDO 6(C2 H6 O2) FORMUL 12 6S6 C15 H28 N4 O6 FORMUL 13 HOH *154(H2 O) HELIX 1 AA1 ASP A 62 THR A 67 5 6 HELIX 2 AA2 ASP A 68 GLY A 76 5 9 HELIX 3 AA3 SER A 77 GLY A 86 1 10 HELIX 4 AA4 GLY A 96 ASP A 100 5 5 HELIX 5 AA5 THR A 111 VAL A 122 1 12 HELIX 6 AA6 ASP A 125 GLY A 130 1 6 HELIX 7 AA7 PRO A 133 GLN A 157 1 25 HELIX 8 AA8 SER A 166 SER A 180 1 15 HELIX 9 AA9 SER A 201 GLY A 215 1 15 HELIX 10 AB1 GLU A 225 ASN A 227 5 3 HELIX 11 AB2 SER A 228 ASP A 234 1 7 HELIX 12 AB3 ASN A 238 SER A 256 1 19 HELIX 13 AB4 ARG A 272 GLY A 287 1 16 HELIX 14 AB5 THR A 306 LEU A 311 1 6 HELIX 15 AB6 ASN A 312 ARG A 334 1 23 HELIX 16 AB7 THR A 358 ALA A 360 5 3 HELIX 17 AB8 ALA A 361 GLY A 376 1 16 HELIX 18 AB9 LEU A 401 LEU A 413 1 13 HELIX 19 AC1 HIS A 486 SER A 490 5 5 HELIX 20 AC2 VAL A 539 ILE A 543 5 5 SHEET 1 AA1 4 MET A 420 VAL A 423 0 SHEET 2 AA1 4 VAL A 38 PHE A 44 -1 N PHE A 44 O MET A 420 SHEET 3 AA1 4 LYS A 462 ARG A 465 1 O ARG A 465 N VAL A 39 SHEET 4 AA1 4 LEU A 522 LEU A 524 -1 O LEU A 524 N LYS A 462 SHEET 1 AA2 8 HIS A 50 LEU A 51 0 SHEET 2 AA2 8 VAL A 414 VAL A 418 -1 O VAL A 418 N HIS A 50 SHEET 3 AA2 8 LEU A 431 THR A 438 -1 O CYS A 437 N LYS A 417 SHEET 4 AA2 8 LEU A 450 ASN A 456 -1 O THR A 451 N HIS A 436 SHEET 5 AA2 8 SER A 528 ILE A 534 -1 O PHE A 532 N LEU A 452 SHEET 6 AA2 8 VAL A 475 PRO A 482 -1 N TYR A 478 O PHE A 531 SHEET 7 AA2 8 VAL A 493 LEU A 495 -1 O GLN A 494 N ARG A 481 SHEET 8 AA2 8 LEU A 498 THR A 499 -1 O LEU A 498 N LEU A 495 SHEET 1 AA3 7 HIS A 50 LEU A 51 0 SHEET 2 AA3 7 VAL A 414 VAL A 418 -1 O VAL A 418 N HIS A 50 SHEET 3 AA3 7 LEU A 431 THR A 438 -1 O CYS A 437 N LYS A 417 SHEET 4 AA3 7 LEU A 450 ASN A 456 -1 O THR A 451 N HIS A 436 SHEET 5 AA3 7 SER A 528 ILE A 534 -1 O PHE A 532 N LEU A 452 SHEET 6 AA3 7 VAL A 475 PRO A 482 -1 N TYR A 478 O PHE A 531 SHEET 7 AA3 7 LYS A 514 LEU A 516 -1 O LEU A 516 N VAL A 475 SHEET 1 AA4 9 LEU A 57 ILE A 61 0 SHEET 2 AA4 9 ALA A 90 PHE A 94 1 O ARG A 93 N ILE A 61 SHEET 3 AA4 9 LEU A 182 LEU A 188 1 O ILE A 185 N PHE A 94 SHEET 4 AA4 9 SER A 219 LEU A 222 1 O SER A 219 N PHE A 186 SHEET 5 AA4 9 LEU A 263 VAL A 268 1 O TYR A 264 N TRP A 220 SHEET 6 AA4 9 SER A 292 ASN A 301 1 O HIS A 296 N VAL A 268 SHEET 7 AA4 9 LYS A 338 TYR A 348 1 O TRP A 340 N VAL A 293 SHEET 8 AA4 9 ILE A 377 ARG A 382 1 O VAL A 379 N LEU A 341 SHEET 9 AA4 9 LEU A 57 ILE A 61 1 N SER A 58 O VAL A 380 SHEET 1 AA5 2 LEU A 102 PHE A 104 0 SHEET 2 AA5 2 SER A 163 TYR A 165 1 O SER A 163 N ILE A 103 SSBOND 1 CYS A 127 CYS A 179 1555 1555 2.07 SSBOND 2 CYS A 437 CYS A 542 1555 1555 2.02 LINK ND2 ASN A 162 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 200 C1 NAG A 602 1555 1555 1.45 LINK ND2 ASN A 238 C1 NAG A 603 1555 1555 1.44 LINK OE2 GLU A 343 C1 6S6 A 613 1555 1555 1.45 LINK ND2 ASN A 459 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.46 CISPEP 1 SER A 88 PRO A 89 0 -1.38 CISPEP 2 GLY A 265 PRO A 266 0 3.93 CISPEP 3 GLN A 383 VAL A 384 0 -5.91 CISPEP 4 TYR A 468 PRO A 469 0 5.40 CRYST1 50.410 88.020 118.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008460 0.00000