data_5LAV # _entry.id 5LAV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LAV WWPDB D_1200000451 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LAV _pdbx_database_status.recvd_initial_deposition_date 2016-06-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kessler, D.' 1 ? 'Gollner, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Med. Chem.' _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 1520-4804 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 10147 _citation.page_last 10162 _citation.title ;Discovery of Novel Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-one Compounds as Chemically Stable and Orally Active Inhibitors of the MDM2-p53 Interaction. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.6b00900 _citation.pdbx_database_id_PubMed 27775892 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gollner, A.' 1 primary 'Rudolph, D.' 2 primary 'Arnhof, H.' 3 primary 'Bauer, M.' 4 primary 'Blake, S.M.' 5 primary 'Boehmelt, G.' 6 primary 'Cockroft, X.L.' 7 primary 'Dahmann, G.' 8 primary 'Ettmayer, P.' 9 primary 'Gerstberger, T.' 10 primary 'Karolyi-Oezguer, J.' 11 primary 'Kessler, D.' 12 primary 'Kofink, C.' 13 primary 'Ramharter, J.' 14 primary 'Rinnenthal, J.' 15 primary 'Savchenko, A.' 16 primary 'Schnitzer, R.' 17 primary 'Weinstabl, H.' 18 primary 'Weyer-Czernilofsky, U.' 19 primary 'Wunberg, T.' 20 primary 'McConnell, D.B.' 21 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5LAV _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.651 _cell.length_a_esd ? _cell.length_b 56.651 _cell.length_b_esd ? _cell.length_c 104.085 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 10883.793 1 6.3.2.- ? ? ? 2 non-polymer syn "(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 418.359 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK IYTMIYRNLVVVN ; _entity_poly.pdbx_seq_one_letter_code_can ;IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK IYTMIYRNLVVVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 PRO n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 GLN n 1 7 GLU n 1 8 THR n 1 9 LEU n 1 10 VAL n 1 11 ARG n 1 12 PRO n 1 13 LYS n 1 14 PRO n 1 15 LEU n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 LEU n 1 20 LEU n 1 21 LYS n 1 22 SER n 1 23 VAL n 1 24 GLY n 1 25 ALA n 1 26 GLN n 1 27 LYS n 1 28 ASP n 1 29 THR n 1 30 TYR n 1 31 THR n 1 32 MET n 1 33 LYS n 1 34 GLU n 1 35 VAL n 1 36 LEU n 1 37 PHE n 1 38 TYR n 1 39 LEU n 1 40 GLY n 1 41 GLN n 1 42 TYR n 1 43 ILE n 1 44 MET n 1 45 THR n 1 46 LYS n 1 47 ARG n 1 48 LEU n 1 49 TYR n 1 50 ASP n 1 51 GLU n 1 52 LYS n 1 53 GLN n 1 54 GLN n 1 55 HIS n 1 56 ILE n 1 57 VAL n 1 58 TYR n 1 59 CYS n 1 60 SER n 1 61 ASN n 1 62 ASP n 1 63 LEU n 1 64 LEU n 1 65 GLY n 1 66 ASP n 1 67 LEU n 1 68 PHE n 1 69 GLY n 1 70 VAL n 1 71 PRO n 1 72 SER n 1 73 PHE n 1 74 SER n 1 75 VAL n 1 76 LYS n 1 77 GLU n 1 78 HIS n 1 79 ARG n 1 80 LYS n 1 81 ILE n 1 82 TYR n 1 83 THR n 1 84 MET n 1 85 ILE n 1 86 TYR n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 VAL n 1 91 VAL n 1 92 VAL n 1 93 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 93 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4T2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MDM2_HUMAN _struct_ref.pdbx_db_accession Q00987 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK IYTMIYRNLVVVN ; _struct_ref.pdbx_align_begin 19 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LAV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00987 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6SK non-polymer . "(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" ? 'C22 H25 Cl2 N3 O' 418.359 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LAV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.300 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.650 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'RESERVOIR SOLUTION : NULL' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-02-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00003 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00003 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5LAV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.730 _reflns.d_resolution_low 49.060 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10925 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.000 _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.900 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 40.83 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.730 _reflns_shell.d_res_low 1.980 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.000 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.428 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 23.300 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -1.0300 _refine.aniso_B[1][2] -0.5100 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -1.0300 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 1.5400 _refine.B_iso_max 62.010 _refine.B_iso_mean 17.9100 _refine.B_iso_min 9.060 _refine.correlation_coeff_Fo_to_Fc 0.9450 _refine.correlation_coeff_Fo_to_Fc_free 0.9310 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LAV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7300 _refine.ls_d_res_low 49.0600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9857 _refine.ls_number_reflns_R_free 1065 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9900 _refine.ls_percent_reflns_R_free 9.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2445 _refine.ls_R_factor_R_free 0.2733 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2415 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model NONE _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1530 _refine.pdbx_overall_ESU_R_Free 0.1410 _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.8800 _refine.overall_SU_ML 0.1130 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7300 _refine_hist.d_res_low 49.0600 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 830 _refine_hist.pdbx_number_residues_total 93 _refine_hist.pdbx_B_iso_mean_ligand 35.62 _refine_hist.pdbx_B_iso_mean_solvent 43.42 _refine_hist.pdbx_number_atoms_protein 765 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.022 810 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 540 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.245 2.038 1106 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.028 3.000 1317 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.677 5.000 94 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 42.274 24.063 32 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.992 15.000 140 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 5.208 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.061 0.200 125 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.021 862 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 159 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.819 2.000 472 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.455 2.000 187 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.547 3.000 768 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.589 4.000 338 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.236 6.000 338 ? r_scangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.7300 _refine_ls_shell.d_res_low 1.7750 _refine_ls_shell.number_reflns_all 791 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.number_reflns_R_work 700 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3770 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3490 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LAV _struct.title 'Novel Spiro[3H-indole-3,2 -pyrrolidin]-2(1H)-one Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) in complex with compound 6b' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LAV _struct_keywords.text 'VIENNA, PPI, MDM2, HDM2, BI, Ligase' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 2 ? GLU A 7 ? PRO A 20 GLU A 25 5 ? 6 HELX_P HELX_P2 AA2 LYS A 13 ? SER A 22 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P3 AA3 MET A 32 ? LYS A 46 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P4 AA4 ASP A 62 ? GLY A 69 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P5 AA5 GLU A 77 ? ARG A 87 ? GLU A 95 ARG A 105 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 30 ? THR A 31 ? TYR A 48 THR A 49 AA1 2 LEU A 9 ? PRO A 12 ? LEU A 27 PRO A 30 AA1 3 LEU A 89 ? VAL A 92 ? LEU A 107 VAL A 110 AA2 1 ILE A 56 ? TYR A 58 ? ILE A 74 TYR A 76 AA2 2 SER A 72 ? SER A 74 ? SER A 90 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 30 ? O TYR A 48 N VAL A 10 ? N VAL A 28 AA1 2 3 N LEU A 9 ? N LEU A 27 O VAL A 92 ? O VAL A 110 AA2 1 2 N VAL A 57 ? N VAL A 75 O PHE A 73 ? O PHE A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6SK 201 ? 8 'binding site for residue 6SK A 201' AC2 Software A SO4 202 ? 5 'binding site for residue SO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LEU A 36 ? LEU A 54 . ? 1_555 ? 2 AC1 8 MET A 44 ? MET A 62 . ? 1_555 ? 3 AC1 8 PHE A 68 ? PHE A 86 . ? 1_555 ? 4 AC1 8 VAL A 75 ? VAL A 93 . ? 1_555 ? 5 AC1 8 HIS A 78 ? HIS A 96 . ? 1_555 ? 6 AC1 8 TYR A 82 ? TYR A 100 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH A 305 . ? 1_555 ? 8 AC1 8 HOH D . ? HOH A 309 . ? 1_555 ? 9 AC2 5 PRO A 2 ? PRO A 20 . ? 1_555 ? 10 AC2 5 ALA A 3 ? ALA A 21 . ? 1_555 ? 11 AC2 5 LYS A 33 ? LYS A 51 . ? 5_554 ? 12 AC2 5 HOH D . ? HOH A 302 . ? 5_554 ? 13 AC2 5 HOH D . ? HOH A 303 . ? 1_555 ? # _atom_sites.entry_id 5LAV _atom_sites.fract_transf_matrix[1][1] 0.017652 _atom_sites.fract_transf_matrix[1][2] 0.010191 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020383 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009608 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 19 19 ILE ILE A . n A 1 2 PRO 2 20 20 PRO PRO A . n A 1 3 ALA 3 21 21 ALA ALA A . n A 1 4 SER 4 22 22 SER SER A . n A 1 5 GLU 5 23 23 GLU GLU A . n A 1 6 GLN 6 24 24 GLN GLN A . n A 1 7 GLU 7 25 25 GLU GLU A . n A 1 8 THR 8 26 26 THR THR A . n A 1 9 LEU 9 27 27 LEU LEU A . n A 1 10 VAL 10 28 28 VAL VAL A . n A 1 11 ARG 11 29 29 ARG ARG A . n A 1 12 PRO 12 30 30 PRO PRO A . n A 1 13 LYS 13 31 31 LYS LYS A . n A 1 14 PRO 14 32 32 PRO PRO A . n A 1 15 LEU 15 33 33 LEU LEU A . n A 1 16 LEU 16 34 34 LEU LEU A . n A 1 17 LEU 17 35 35 LEU LEU A . n A 1 18 LYS 18 36 36 LYS LYS A . n A 1 19 LEU 19 37 37 LEU LEU A . n A 1 20 LEU 20 38 38 LEU LEU A . n A 1 21 LYS 21 39 39 LYS LYS A . n A 1 22 SER 22 40 40 SER SER A . n A 1 23 VAL 23 41 41 VAL VAL A . n A 1 24 GLY 24 42 42 GLY GLY A . n A 1 25 ALA 25 43 43 ALA ALA A . n A 1 26 GLN 26 44 44 GLN GLN A . n A 1 27 LYS 27 45 45 LYS LYS A . n A 1 28 ASP 28 46 46 ASP ASP A . n A 1 29 THR 29 47 47 THR THR A . n A 1 30 TYR 30 48 48 TYR TYR A . n A 1 31 THR 31 49 49 THR THR A . n A 1 32 MET 32 50 50 MET MET A . n A 1 33 LYS 33 51 51 LYS LYS A . n A 1 34 GLU 34 52 52 GLU GLU A . n A 1 35 VAL 35 53 53 VAL VAL A . n A 1 36 LEU 36 54 54 LEU LEU A . n A 1 37 PHE 37 55 55 PHE PHE A . n A 1 38 TYR 38 56 56 TYR TYR A . n A 1 39 LEU 39 57 57 LEU LEU A . n A 1 40 GLY 40 58 58 GLY GLY A . n A 1 41 GLN 41 59 59 GLN GLN A . n A 1 42 TYR 42 60 60 TYR TYR A . n A 1 43 ILE 43 61 61 ILE ILE A . n A 1 44 MET 44 62 62 MET MET A . n A 1 45 THR 45 63 63 THR THR A . n A 1 46 LYS 46 64 64 LYS LYS A . n A 1 47 ARG 47 65 65 ARG ARG A . n A 1 48 LEU 48 66 66 LEU LEU A . n A 1 49 TYR 49 67 67 TYR TYR A . n A 1 50 ASP 50 68 68 ASP ASP A . n A 1 51 GLU 51 69 69 GLU GLU A . n A 1 52 LYS 52 70 70 LYS LYS A . n A 1 53 GLN 53 71 71 GLN GLN A . n A 1 54 GLN 54 72 72 GLN GLN A . n A 1 55 HIS 55 73 73 HIS HIS A . n A 1 56 ILE 56 74 74 ILE ILE A . n A 1 57 VAL 57 75 75 VAL VAL A . n A 1 58 TYR 58 76 76 TYR TYR A . n A 1 59 CYS 59 77 77 CYS CYS A . n A 1 60 SER 60 78 78 SER SER A . n A 1 61 ASN 61 79 79 ASN ASN A . n A 1 62 ASP 62 80 80 ASP ASP A . n A 1 63 LEU 63 81 81 LEU LEU A . n A 1 64 LEU 64 82 82 LEU LEU A . n A 1 65 GLY 65 83 83 GLY GLY A . n A 1 66 ASP 66 84 84 ASP ASP A . n A 1 67 LEU 67 85 85 LEU LEU A . n A 1 68 PHE 68 86 86 PHE PHE A . n A 1 69 GLY 69 87 87 GLY GLY A . n A 1 70 VAL 70 88 88 VAL VAL A . n A 1 71 PRO 71 89 89 PRO PRO A . n A 1 72 SER 72 90 90 SER SER A . n A 1 73 PHE 73 91 91 PHE PHE A . n A 1 74 SER 74 92 92 SER SER A . n A 1 75 VAL 75 93 93 VAL VAL A . n A 1 76 LYS 76 94 94 LYS LYS A . n A 1 77 GLU 77 95 95 GLU GLU A . n A 1 78 HIS 78 96 96 HIS HIS A . n A 1 79 ARG 79 97 97 ARG ARG A . n A 1 80 LYS 80 98 98 LYS LYS A . n A 1 81 ILE 81 99 99 ILE ILE A . n A 1 82 TYR 82 100 100 TYR TYR A . n A 1 83 THR 83 101 101 THR THR A . n A 1 84 MET 84 102 102 MET MET A . n A 1 85 ILE 85 103 103 ILE ILE A . n A 1 86 TYR 86 104 104 TYR TYR A . n A 1 87 ARG 87 105 105 ARG ARG A . n A 1 88 ASN 88 106 106 ASN ASN A . n A 1 89 LEU 89 107 107 LEU LEU A . n A 1 90 VAL 90 108 108 VAL VAL A . n A 1 91 VAL 91 109 109 VAL VAL A . n A 1 92 VAL 92 110 110 VAL VAL A . n A 1 93 ASN 93 111 111 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6SK 1 201 1 6SK INX A . C 3 SO4 1 202 1 SO4 SO4 A . D 4 HOH 1 301 13 HOH HOH A . D 4 HOH 2 302 5 HOH HOH A . D 4 HOH 3 303 4 HOH HOH A . D 4 HOH 4 304 32 HOH HOH A . D 4 HOH 5 305 17 HOH HOH A . D 4 HOH 6 306 2 HOH HOH A . D 4 HOH 7 307 20 HOH HOH A . D 4 HOH 8 308 3 HOH HOH A . D 4 HOH 9 309 21 HOH HOH A . D 4 HOH 10 310 31 HOH HOH A . D 4 HOH 11 311 18 HOH HOH A . D 4 HOH 12 312 24 HOH HOH A . D 4 HOH 13 313 9 HOH HOH A . D 4 HOH 14 314 16 HOH HOH A . D 4 HOH 15 315 8 HOH HOH A . D 4 HOH 16 316 12 HOH HOH A . D 4 HOH 17 317 11 HOH HOH A . D 4 HOH 18 318 1 HOH HOH A . D 4 HOH 19 319 22 HOH HOH A . D 4 HOH 20 320 23 HOH HOH A . D 4 HOH 21 321 15 HOH HOH A . D 4 HOH 22 322 14 HOH HOH A . D 4 HOH 23 323 29 HOH HOH A . D 4 HOH 24 324 7 HOH HOH A . D 4 HOH 25 325 19 HOH HOH A . D 4 HOH 26 326 30 HOH HOH A . D 4 HOH 27 327 27 HOH HOH A . D 4 HOH 28 328 26 HOH HOH A . D 4 HOH 29 329 25 HOH HOH A . D 4 HOH 30 330 28 HOH HOH A . D 4 HOH 31 331 6 HOH HOH A . D 4 HOH 32 332 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 110 ? 1 MORE -8 ? 1 'SSA (A^2)' 6070 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-02 2 'Structure model' 1 1 2016-12-21 3 'Structure model' 1 2 2018-04-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' reflns 3 3 'Structure model' reflns_shell 4 3 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 2 3 'Structure model' '_reflns_shell.Rmerge_I_obs' 3 3 'Structure model' '_struct.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.5.0109 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 79 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.40 _pdbx_validate_torsion.psi 53.17 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 6SK 3 'SULFATE ION' SO4 4 water HOH #