HEADER HYDROLASE 15-JUN-16 5LB3 TITLE CRYSTAL STRUCTURE OF HUMAN RECQL5 HELICASE IN COMPLEX WITH ADP/MG. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE Q5; COMPND 3 CHAIN: B, E; COMPND 4 SYNONYM: DNA HELICASE,RECQ-LIKE TYPE 5,RECQ5,RECQ PROTEIN-LIKE 5; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RECQL5, RECQ5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HELICASE, RECQ, TRANSCRIPTION, DNA REPAIR, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,H.AITKENHEAD,P.SAVITSKY,T.KROJER,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,O.GILEADI,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 6 10-JAN-24 5LB3 1 LINK REVDAT 5 24-JAN-18 5LB3 1 AUTHOR REVDAT 4 03-MAY-17 5LB3 1 JRNL REVDAT 3 01-FEB-17 5LB3 1 JRNL REVDAT 2 18-JAN-17 5LB3 1 JRNL REVDAT 1 06-JUL-16 5LB3 0 JRNL AUTH J.A.NEWMAN,H.AITKENHEAD,P.SAVITSKY,O.GILEADI JRNL TITL INSIGHTS INTO THE RECQ HELICASE MECHANISM REVEALED BY THE JRNL TITL 2 STRUCTURE OF THE HELICASE DOMAIN OF HUMAN RECQL5. JRNL REF NUCLEIC ACIDS RES. V. 45 4231 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28100692 JRNL DOI 10.1093/NAR/GKW1362 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 87297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 4298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8800 - 5.5535 0.99 2866 148 0.1614 0.1937 REMARK 3 2 5.5535 - 4.4239 1.00 2817 155 0.1615 0.1872 REMARK 3 3 4.4239 - 3.8694 1.00 2806 129 0.1486 0.1771 REMARK 3 4 3.8694 - 3.5177 1.00 2776 155 0.1682 0.2158 REMARK 3 5 3.5177 - 3.2668 1.00 2793 134 0.1794 0.1913 REMARK 3 6 3.2668 - 3.0749 1.00 2765 162 0.1935 0.2289 REMARK 3 7 3.0749 - 2.9214 1.00 2745 160 0.1967 0.2290 REMARK 3 8 2.9214 - 2.7946 1.00 2797 139 0.1935 0.2452 REMARK 3 9 2.7946 - 2.6873 1.00 2744 151 0.1966 0.2498 REMARK 3 10 2.6873 - 2.5948 1.00 2746 138 0.1990 0.2466 REMARK 3 11 2.5948 - 2.5138 1.00 2767 167 0.2006 0.2308 REMARK 3 12 2.5138 - 2.4421 1.00 2773 138 0.2000 0.2578 REMARK 3 13 2.4421 - 2.3779 1.00 2800 126 0.2071 0.2631 REMARK 3 14 2.3779 - 2.3200 1.00 2793 119 0.2068 0.2539 REMARK 3 15 2.3200 - 2.2673 1.00 2737 143 0.2067 0.2800 REMARK 3 16 2.2673 - 2.2191 1.00 2800 111 0.2130 0.2461 REMARK 3 17 2.2191 - 2.1748 1.00 2735 146 0.2137 0.2529 REMARK 3 18 2.1748 - 2.1338 1.00 2745 154 0.2113 0.2554 REMARK 3 19 2.1338 - 2.0957 1.00 2741 153 0.2157 0.2374 REMARK 3 20 2.0957 - 2.0602 1.00 2779 132 0.2209 0.2745 REMARK 3 21 2.0602 - 2.0270 1.00 2745 141 0.2312 0.2443 REMARK 3 22 2.0270 - 1.9959 1.00 2768 156 0.2436 0.2956 REMARK 3 23 1.9959 - 1.9665 1.00 2700 135 0.2472 0.2815 REMARK 3 24 1.9665 - 1.9389 1.00 2782 140 0.2651 0.3195 REMARK 3 25 1.9389 - 1.9127 1.00 2706 168 0.2773 0.3490 REMARK 3 26 1.9127 - 1.8879 1.00 2764 148 0.2915 0.3627 REMARK 3 27 1.8879 - 1.8643 1.00 2733 138 0.2873 0.3674 REMARK 3 28 1.8643 - 1.8418 1.00 2759 139 0.3015 0.3045 REMARK 3 29 1.8418 - 1.8204 1.00 2719 146 0.3176 0.3401 REMARK 3 30 1.8204 - 1.8000 1.00 2798 127 0.3075 0.3406 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7074 REMARK 3 ANGLE : 0.796 9593 REMARK 3 CHIRALITY : 0.028 1078 REMARK 3 PLANARITY : 0.004 1233 REMARK 3 DIHEDRAL : 13.891 2626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.81200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG6K, 0.15M LITHIUM CHLORIDE, REMARK 280 2.5% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.47150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 9 REMARK 465 PHE B 319 REMARK 465 GLY B 320 REMARK 465 MET B 321 REMARK 465 GLY B 322 REMARK 465 VAL B 323 REMARK 465 MET E 9 REMARK 465 ASP E 255 REMARK 465 LYS E 256 REMARK 465 GLY E 320 REMARK 465 MET E 321 REMARK 465 GLY E 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ASP B 324 CG OD1 OD2 REMARK 470 LYS B 393 CD CE NZ REMARK 470 ARG E 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 22 CD CE NZ REMARK 470 LYS E 110 CG CD CE NZ REMARK 470 ARG E 118 CG CD NE CZ NH1 NH2 REMARK 470 PHE E 319 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 393 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 829 O HOH E 983 1.82 REMARK 500 O HOH B 949 O HOH B 974 1.83 REMARK 500 O HOH E 994 O HOH E 1062 1.85 REMARK 500 O HOH E 904 O HOH E 906 1.87 REMARK 500 O HOH B 611 O HOH B 977 1.91 REMARK 500 O HOH B 915 O HOH B 919 1.94 REMARK 500 O HOH E 913 O HOH E 942 1.94 REMARK 500 O HOH E 921 O HOH E 1001 1.95 REMARK 500 O HOH B 764 O HOH B 1054 1.96 REMARK 500 O HOH B 666 O HOH B 850 1.98 REMARK 500 O HOH E 711 O HOH E 920 2.00 REMARK 500 O HOH B 952 O HOH B 983 2.01 REMARK 500 O HOH B 872 O HOH B 887 2.02 REMARK 500 O HOH B 921 O HOH B 936 2.02 REMARK 500 O HOH B 788 O HOH B 939 2.02 REMARK 500 OE1 GLU B 201 O HOH B 601 2.02 REMARK 500 O HOH E 925 O HOH E 1005 2.04 REMARK 500 OG SER B 152 O HOH B 602 2.04 REMARK 500 O HOH B 816 O HOH B 1089 2.05 REMARK 500 O HOH B 831 O HOH B 1011 2.06 REMARK 500 O HOH E 1018 O HOH E 1031 2.06 REMARK 500 OG1 THR B 395 O HOH B 603 2.07 REMARK 500 O HOH E 705 O HOH E 934 2.07 REMARK 500 O HOH E 759 O HOH E 865 2.07 REMARK 500 O HOH B 910 O HOH B 1066 2.07 REMARK 500 O HOH B 1002 O HOH B 1086 2.08 REMARK 500 O HOH E 904 O HOH E 1045 2.09 REMARK 500 O HOH B 1056 O HOH B 1121 2.11 REMARK 500 O HOH B 673 O HOH B 818 2.11 REMARK 500 O HOH E 802 O HOH E 969 2.12 REMARK 500 O ALA E 390 O HOH E 601 2.12 REMARK 500 O HOH B 681 O HOH B 949 2.12 REMARK 500 O HOH E 723 O HOH E 974 2.12 REMARK 500 OE1 GLU E 270 O HOH E 602 2.14 REMARK 500 O HOH B 604 O HOH B 962 2.15 REMARK 500 OE1 GLU B 270 O HOH B 604 2.15 REMARK 500 O3' ADP E 502 O HOH E 603 2.15 REMARK 500 O HOH B 1043 O HOH B 1107 2.15 REMARK 500 O HOH E 1013 O HOH E 1063 2.15 REMARK 500 O HOH B 800 O HOH B 1064 2.16 REMARK 500 OE1 GLU B 408 O HOH B 605 2.16 REMARK 500 NZ LYS E 243 O HOH E 604 2.17 REMARK 500 O HOH B 714 O HOH B 978 2.17 REMARK 500 O HOH E 1038 O HOH E 1056 2.17 REMARK 500 O HOH B 913 O HOH B 1097 2.17 REMARK 500 NE ARG E 386 O HOH E 605 2.18 REMARK 500 O HOH B 817 O HOH B 1016 2.18 REMARK 500 O HOH E 1038 O HOH E 1048 2.19 REMARK 500 O HOH B 823 O HOH B 1030 2.19 REMARK 500 O2' ADP E 502 O HOH E 606 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1001 O HOH E 872 2755 2.02 REMARK 500 O HOH B 945 O HOH E 1015 2755 2.07 REMARK 500 O HOH B 1117 O HOH E 1030 2745 2.14 REMARK 500 O HOH B 957 O HOH B 965 2756 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 96 86.56 -68.98 REMARK 500 LYS B 120 70.39 52.59 REMARK 500 ASP B 168 52.73 -151.47 REMARK 500 ASN B 436 81.94 -164.20 REMARK 500 ASP E 168 63.55 -155.64 REMARK 500 LEU E 183 46.02 -107.35 REMARK 500 ASN E 285 106.94 -57.03 REMARK 500 ALA E 428 -49.31 69.32 REMARK 500 ASN E 436 86.00 -150.65 REMARK 500 ASN E 436 86.00 -151.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1122 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH E1065 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH E1066 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH E1067 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH E1068 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH E1069 DISTANCE = 7.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 411 SG REMARK 620 2 CYS B 427 SG 109.0 REMARK 620 3 CYS B 431 SG 111.8 118.4 REMARK 620 4 CYS B 434 SG 104.9 109.5 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 502 O2B REMARK 620 2 HOH B 631 O 89.9 REMARK 620 3 HOH B 656 O 96.6 173.3 REMARK 620 4 HOH B 662 O 162.4 91.8 82.5 REMARK 620 5 HOH B 770 O 91.8 84.5 96.8 71.0 REMARK 620 6 HOH B 824 O 116.4 81.6 94.1 81.1 148.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 411 SG REMARK 620 2 CYS E 427 SG 109.9 REMARK 620 3 CYS E 431 SG 116.9 113.0 REMARK 620 4 CYS E 434 SG 103.8 108.9 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP E 502 O3B REMARK 620 2 HOH E 635 O 78.4 REMARK 620 3 HOH E 680 O 81.2 90.1 REMARK 620 4 HOH E 752 O 86.8 111.3 152.8 REMARK 620 5 HOH E 827 O 103.7 168.5 79.1 80.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 503 DBREF 5LB3 B 11 453 UNP O94762 RECQ5_HUMAN 11 453 DBREF 5LB3 E 11 453 UNP O94762 RECQ5_HUMAN 11 453 SEQADV 5LB3 MET B 9 UNP O94762 INITIATING METHIONINE SEQADV 5LB3 SER B 10 UNP O94762 EXPRESSION TAG SEQADV 5LB3 MET E 9 UNP O94762 INITIATING METHIONINE SEQADV 5LB3 SER E 10 UNP O94762 EXPRESSION TAG SEQRES 1 B 445 MET SER ASP PRO GLU ARG ARG VAL ARG SER THR LEU LYS SEQRES 2 B 445 LYS VAL PHE GLY PHE ASP SER PHE LYS THR PRO LEU GLN SEQRES 3 B 445 GLU SER ALA THR MET ALA VAL VAL LYS GLY ASN LYS ASP SEQRES 4 B 445 VAL PHE VAL CYS MET PRO THR GLY ALA GLY LYS SER LEU SEQRES 5 B 445 CYS TYR GLN LEU PRO ALA LEU LEU ALA LYS GLY ILE THR SEQRES 6 B 445 ILE VAL VAL SER PRO LEU ILE ALA LEU ILE GLN ASP GLN SEQRES 7 B 445 VAL ASP HIS LEU LEU THR LEU LYS VAL ARG VAL SER SER SEQRES 8 B 445 LEU ASN SER LYS LEU SER ALA GLN GLU ARG LYS GLU LEU SEQRES 9 B 445 LEU ALA ASP LEU GLU ARG GLU LYS PRO GLN THR LYS ILE SEQRES 10 B 445 LEU TYR ILE THR PRO GLU MET ALA ALA SER SER SER PHE SEQRES 11 B 445 GLN PRO THR LEU ASN SER LEU VAL SER ARG HIS LEU LEU SEQRES 12 B 445 SER TYR LEU VAL VAL ASP GLU ALA HIS CYS VAL SER GLN SEQRES 13 B 445 TRP GLY HIS ASP PHE ARG PRO ASP TYR LEU ARG LEU GLY SEQRES 14 B 445 ALA LEU ARG SER ARG LEU GLY HIS ALA PRO CYS VAL ALA SEQRES 15 B 445 LEU THR ALA THR ALA THR PRO GLN VAL GLN GLU ASP VAL SEQRES 16 B 445 PHE ALA ALA LEU HIS LEU LYS LYS PRO VAL ALA ILE PHE SEQRES 17 B 445 LYS THR PRO CYS PHE ARG ALA ASN LEU PHE TYR ASP VAL SEQRES 18 B 445 GLN PHE LYS GLU LEU ILE SER ASP PRO TYR GLY ASN LEU SEQRES 19 B 445 LYS ASP PHE CYS LEU LYS ALA LEU GLY GLN GLU ALA ASP SEQRES 20 B 445 LYS GLY LEU SER GLY CYS GLY ILE VAL TYR CYS ARG THR SEQRES 21 B 445 ARG GLU ALA CYS GLU GLN LEU ALA ILE GLU LEU SER CYS SEQRES 22 B 445 ARG GLY VAL ASN ALA LYS ALA TYR HIS ALA GLY LEU LYS SEQRES 23 B 445 ALA SER GLU ARG THR LEU VAL GLN ASN ASP TRP MET GLU SEQRES 24 B 445 GLU LYS VAL PRO VAL ILE VAL ALA THR ILE SER PHE GLY SEQRES 25 B 445 MET GLY VAL ASP LYS ALA ASN VAL ARG PHE VAL ALA HIS SEQRES 26 B 445 TRP ASN ILE ALA LYS SER MET ALA GLY TYR TYR GLN GLU SEQRES 27 B 445 SER GLY ARG ALA GLY ARG ASP GLY LYS PRO SER TRP CYS SEQRES 28 B 445 ARG LEU TYR TYR SER ARG ASN ASP ARG ASP GLN VAL SER SEQRES 29 B 445 PHE LEU ILE ARG LYS GLU VAL ALA LYS LEU GLN GLU LYS SEQRES 30 B 445 ARG GLY ASN LYS ALA SER ASP LYS ALA THR ILE MET ALA SEQRES 31 B 445 PHE ASP ALA LEU VAL THR PHE CYS GLU GLU LEU GLY CYS SEQRES 32 B 445 ARG HIS ALA ALA ILE ALA LYS TYR PHE GLY ASP ALA LEU SEQRES 33 B 445 PRO ALA CYS ALA LYS GLY CYS ASP HIS CYS GLN ASN PRO SEQRES 34 B 445 THR ALA VAL ARG ARG ARG LEU GLU ALA LEU GLU ARG SER SEQRES 35 B 445 SER SER TRP SEQRES 1 E 445 MET SER ASP PRO GLU ARG ARG VAL ARG SER THR LEU LYS SEQRES 2 E 445 LYS VAL PHE GLY PHE ASP SER PHE LYS THR PRO LEU GLN SEQRES 3 E 445 GLU SER ALA THR MET ALA VAL VAL LYS GLY ASN LYS ASP SEQRES 4 E 445 VAL PHE VAL CYS MET PRO THR GLY ALA GLY LYS SER LEU SEQRES 5 E 445 CYS TYR GLN LEU PRO ALA LEU LEU ALA LYS GLY ILE THR SEQRES 6 E 445 ILE VAL VAL SER PRO LEU ILE ALA LEU ILE GLN ASP GLN SEQRES 7 E 445 VAL ASP HIS LEU LEU THR LEU LYS VAL ARG VAL SER SER SEQRES 8 E 445 LEU ASN SER LYS LEU SER ALA GLN GLU ARG LYS GLU LEU SEQRES 9 E 445 LEU ALA ASP LEU GLU ARG GLU LYS PRO GLN THR LYS ILE SEQRES 10 E 445 LEU TYR ILE THR PRO GLU MET ALA ALA SER SER SER PHE SEQRES 11 E 445 GLN PRO THR LEU ASN SER LEU VAL SER ARG HIS LEU LEU SEQRES 12 E 445 SER TYR LEU VAL VAL ASP GLU ALA HIS CYS VAL SER GLN SEQRES 13 E 445 TRP GLY HIS ASP PHE ARG PRO ASP TYR LEU ARG LEU GLY SEQRES 14 E 445 ALA LEU ARG SER ARG LEU GLY HIS ALA PRO CYS VAL ALA SEQRES 15 E 445 LEU THR ALA THR ALA THR PRO GLN VAL GLN GLU ASP VAL SEQRES 16 E 445 PHE ALA ALA LEU HIS LEU LYS LYS PRO VAL ALA ILE PHE SEQRES 17 E 445 LYS THR PRO CYS PHE ARG ALA ASN LEU PHE TYR ASP VAL SEQRES 18 E 445 GLN PHE LYS GLU LEU ILE SER ASP PRO TYR GLY ASN LEU SEQRES 19 E 445 LYS ASP PHE CYS LEU LYS ALA LEU GLY GLN GLU ALA ASP SEQRES 20 E 445 LYS GLY LEU SER GLY CYS GLY ILE VAL TYR CYS ARG THR SEQRES 21 E 445 ARG GLU ALA CYS GLU GLN LEU ALA ILE GLU LEU SER CYS SEQRES 22 E 445 ARG GLY VAL ASN ALA LYS ALA TYR HIS ALA GLY LEU LYS SEQRES 23 E 445 ALA SER GLU ARG THR LEU VAL GLN ASN ASP TRP MET GLU SEQRES 24 E 445 GLU LYS VAL PRO VAL ILE VAL ALA THR ILE SER PHE GLY SEQRES 25 E 445 MET GLY VAL ASP LYS ALA ASN VAL ARG PHE VAL ALA HIS SEQRES 26 E 445 TRP ASN ILE ALA LYS SER MET ALA GLY TYR TYR GLN GLU SEQRES 27 E 445 SER GLY ARG ALA GLY ARG ASP GLY LYS PRO SER TRP CYS SEQRES 28 E 445 ARG LEU TYR TYR SER ARG ASN ASP ARG ASP GLN VAL SER SEQRES 29 E 445 PHE LEU ILE ARG LYS GLU VAL ALA LYS LEU GLN GLU LYS SEQRES 30 E 445 ARG GLY ASN LYS ALA SER ASP LYS ALA THR ILE MET ALA SEQRES 31 E 445 PHE ASP ALA LEU VAL THR PHE CYS GLU GLU LEU GLY CYS SEQRES 32 E 445 ARG HIS ALA ALA ILE ALA LYS TYR PHE GLY ASP ALA LEU SEQRES 33 E 445 PRO ALA CYS ALA LYS GLY CYS ASP HIS CYS GLN ASN PRO SEQRES 34 E 445 THR ALA VAL ARG ARG ARG LEU GLU ALA LEU GLU ARG SER SEQRES 35 E 445 SER SER TRP HET ZN B 501 1 HET ADP B 502 27 HET MG B 503 1 HET ZN E 501 1 HET ADP E 502 27 HET MG E 503 1 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *991(H2 O) HELIX 1 AA1 ASP B 11 VAL B 23 1 13 HELIX 2 AA2 THR B 31 GLY B 44 1 14 HELIX 3 AA3 SER B 59 ALA B 69 1 11 HELIX 4 AA4 LEU B 79 LEU B 93 1 15 HELIX 5 AA5 SER B 105 GLU B 117 1 13 HELIX 6 AA6 THR B 129 ALA B 134 1 6 HELIX 7 AA7 PHE B 138 ARG B 148 1 11 HELIX 8 AA8 GLU B 158 SER B 163 5 6 HELIX 9 AA9 ARG B 170 LEU B 174 5 5 HELIX 10 AB1 ARG B 175 ARG B 182 1 8 HELIX 11 AB2 THR B 196 LEU B 207 1 12 HELIX 12 AB3 GLU B 233 ILE B 235 5 3 HELIX 13 AB4 ASP B 237 LEU B 250 1 14 HELIX 14 AB5 GLY B 251 ASP B 255 5 5 HELIX 15 AB6 THR B 268 GLY B 283 1 16 HELIX 16 AB7 LYS B 294 GLU B 307 1 14 HELIX 17 AB8 SER B 339 GLY B 348 1 10 HELIX 18 AB9 SER B 364 GLY B 387 1 24 HELIX 19 AC1 SER B 391 GLU B 408 1 18 HELIX 20 AC2 CYS B 411 GLY B 421 1 11 HELIX 21 AC3 CYS B 431 ASN B 436 1 6 HELIX 22 AC4 ASN B 436 SER B 451 1 16 HELIX 23 AC5 ASP E 11 VAL E 23 1 13 HELIX 24 AC6 THR E 31 GLY E 44 1 14 HELIX 25 AC7 SER E 59 ALA E 69 1 11 HELIX 26 AC8 LEU E 79 LEU E 93 1 15 HELIX 27 AC9 SER E 105 ARG E 118 1 14 HELIX 28 AD1 THR E 129 SER E 135 1 7 HELIX 29 AD2 PHE E 138 ARG E 148 1 11 HELIX 30 AD3 GLU E 158 SER E 163 5 6 HELIX 31 AD4 ARG E 170 LEU E 174 5 5 HELIX 32 AD5 ARG E 175 LEU E 183 1 9 HELIX 33 AD6 THR E 196 LEU E 207 1 12 HELIX 34 AD7 GLU E 233 ILE E 235 5 3 HELIX 35 AD8 ASP E 237 LEU E 250 1 14 HELIX 36 AD9 THR E 268 CYS E 281 1 14 HELIX 37 AE1 LYS E 294 GLU E 307 1 14 HELIX 38 AE2 SER E 339 GLY E 348 1 10 HELIX 39 AE3 SER E 364 GLY E 387 1 24 HELIX 40 AE4 ALA E 390 GLU E 408 1 19 HELIX 41 AE5 CYS E 411 PHE E 420 1 10 HELIX 42 AE6 CYS E 431 ASN E 436 1 6 HELIX 43 AE7 ASN E 436 SER E 450 1 15 SHEET 1 AA1 7 VAL B 97 LEU B 100 0 SHEET 2 AA1 7 ILE B 125 ILE B 128 1 O TYR B 127 N LEU B 100 SHEET 3 AA1 7 THR B 73 VAL B 76 1 N THR B 73 O LEU B 126 SHEET 4 AA1 7 TYR B 153 VAL B 156 1 O VAL B 155 N ILE B 74 SHEET 5 AA1 7 CYS B 188 THR B 192 1 O VAL B 189 N VAL B 156 SHEET 6 AA1 7 VAL B 48 CYS B 51 1 N VAL B 50 O ALA B 190 SHEET 7 AA1 7 ALA B 214 LYS B 217 1 O PHE B 216 N CYS B 51 SHEET 1 AA2 6 LEU B 225 PHE B 231 0 SHEET 2 AA2 6 SER B 357 TYR B 363 1 O TYR B 363 N GLN B 230 SHEET 3 AA2 6 VAL B 328 HIS B 333 1 N HIS B 333 O TYR B 362 SHEET 4 AA2 6 CYS B 261 TYR B 265 1 N ILE B 263 O ALA B 332 SHEET 5 AA2 6 VAL B 312 ALA B 315 1 O ALA B 315 N VAL B 264 SHEET 6 AA2 6 ALA B 286 TYR B 289 1 N LYS B 287 O VAL B 314 SHEET 1 AA3 7 VAL E 97 LEU E 100 0 SHEET 2 AA3 7 ILE E 125 ILE E 128 1 O TYR E 127 N LEU E 100 SHEET 3 AA3 7 ILE E 72 VAL E 76 1 N VAL E 75 O LEU E 126 SHEET 4 AA3 7 LEU E 151 VAL E 156 1 O VAL E 155 N VAL E 76 SHEET 5 AA3 7 CYS E 188 THR E 192 1 O VAL E 189 N VAL E 156 SHEET 6 AA3 7 VAL E 48 CYS E 51 1 N VAL E 48 O ALA E 190 SHEET 7 AA3 7 ALA E 214 LYS E 217 1 O PHE E 216 N CYS E 51 SHEET 1 AA4 6 LEU E 225 PHE E 231 0 SHEET 2 AA4 6 SER E 357 TYR E 363 1 O CYS E 359 N PHE E 226 SHEET 3 AA4 6 VAL E 328 HIS E 333 1 N HIS E 333 O TYR E 362 SHEET 4 AA4 6 CYS E 261 TYR E 265 1 N TYR E 265 O ALA E 332 SHEET 5 AA4 6 VAL E 312 ALA E 315 1 O ALA E 315 N VAL E 264 SHEET 6 AA4 6 ALA E 286 TYR E 289 1 N TYR E 289 O VAL E 314 LINK SG CYS B 411 ZN ZN B 501 1555 1555 2.36 LINK SG CYS B 427 ZN ZN B 501 1555 1555 2.36 LINK SG CYS B 431 ZN ZN B 501 1555 1555 2.40 LINK SG CYS B 434 ZN ZN B 501 1555 1555 2.29 LINK O2B ADP B 502 MG MG B 503 1555 1555 2.01 LINK MG MG B 503 O HOH B 631 1555 1555 2.69 LINK MG MG B 503 O HOH B 656 1555 1555 2.14 LINK MG MG B 503 O HOH B 662 1555 1555 2.71 LINK MG MG B 503 O HOH B 770 1555 1555 1.91 LINK MG MG B 503 O HOH B 824 1555 1555 2.06 LINK SG CYS E 411 ZN ZN E 501 1555 1555 2.34 LINK SG CYS E 427 ZN ZN E 501 1555 1555 2.29 LINK SG CYS E 431 ZN ZN E 501 1555 1555 2.33 LINK SG CYS E 434 ZN ZN E 501 1555 1555 2.36 LINK O3B ADP E 502 MG MG E 503 1555 1555 2.32 LINK MG MG E 503 O HOH E 635 1555 1555 2.43 LINK MG MG E 503 O HOH E 680 1555 1555 2.81 LINK MG MG E 503 O HOH E 752 1555 1555 2.02 LINK MG MG E 503 O HOH E 827 1555 1555 2.32 CISPEP 1 LYS B 211 PRO B 212 0 -1.50 CISPEP 2 LYS E 211 PRO E 212 0 -0.36 SITE 1 AC1 4 CYS B 411 CYS B 427 CYS B 431 CYS B 434 SITE 1 AC2 23 PHE B 26 SER B 28 PHE B 29 LYS B 30 SITE 2 AC2 23 GLN B 34 PRO B 53 THR B 54 GLY B 55 SITE 3 AC2 23 ALA B 56 GLY B 57 LYS B 58 SER B 59 SITE 4 AC2 23 LEU B 60 MG B 503 HOH B 627 HOH B 631 SITE 5 AC2 23 HOH B 650 HOH B 656 HOH B 694 HOH B 742 SITE 6 AC2 23 HOH B 770 HOH B 788 HOH B 799 SITE 1 AC3 6 ADP B 502 HOH B 631 HOH B 656 HOH B 662 SITE 2 AC3 6 HOH B 770 HOH B 824 SITE 1 AC4 4 CYS E 411 CYS E 427 CYS E 431 CYS E 434 SITE 1 AC5 22 PHE E 26 SER E 28 PHE E 29 LYS E 30 SITE 2 AC5 22 GLN E 34 PRO E 53 THR E 54 GLY E 55 SITE 3 AC5 22 ALA E 56 GLY E 57 LYS E 58 SER E 59 SITE 4 AC5 22 LEU E 60 MG E 503 HOH E 603 HOH E 606 SITE 5 AC5 22 HOH E 635 HOH E 678 HOH E 680 HOH E 690 SITE 6 AC5 22 HOH E 696 HOH E 752 SITE 1 AC6 5 ADP E 502 HOH E 635 HOH E 680 HOH E 752 SITE 2 AC6 5 HOH E 827 CRYST1 72.757 62.943 104.703 90.00 95.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013744 0.000000 0.001309 0.00000 SCALE2 0.000000 0.015887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009594 0.00000