HEADER HYDROLASE 15-JUN-16 5LB8 TITLE CRYSTAL STRUCTURE OF HUMAN RECQL5 HELICASE APO FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE Q5; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DNA HELICASE,RECQ-LIKE TYPE 5,RECQ5,RECQ PROTEIN-LIKE 5; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RECQL5, RECQ5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HELICASE, RECQ, TRANSCRIPTION, DNA REPAIR, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,H.AITKENHEAD,P.SAVITSKY,T.KROJER,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,O.GILEADI,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 7 08-MAY-24 5LB8 1 REMARK REVDAT 6 24-JAN-18 5LB8 1 AUTHOR REVDAT 5 30-AUG-17 5LB8 1 REMARK REVDAT 4 03-MAY-17 5LB8 1 JRNL REVDAT 3 01-FEB-17 5LB8 1 JRNL REVDAT 2 18-JAN-17 5LB8 1 JRNL REVDAT 1 06-JUL-16 5LB8 0 JRNL AUTH J.A.NEWMAN,H.AITKENHEAD,P.SAVITSKY,O.GILEADI JRNL TITL INSIGHTS INTO THE RECQ HELICASE MECHANISM REVEALED BY THE JRNL TITL 2 STRUCTURE OF THE HELICASE DOMAIN OF HUMAN RECQL5. JRNL REF NUCLEIC ACIDS RES. V. 45 4231 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28100692 JRNL DOI 10.1093/NAR/GKW1362 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.303 REMARK 3 R VALUE (WORKING SET) : 0.301 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2785 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3250 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2644 REMARK 3 BIN R VALUE (WORKING SET) : 0.3234 REMARK 3 BIN FREE R VALUE : 0.3552 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 120.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.74050 REMARK 3 B22 (A**2) : -3.74050 REMARK 3 B33 (A**2) : 7.48100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.812 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.753 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6692 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9063 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2307 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 144 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 987 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6692 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 880 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7512 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.89 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.76 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14135 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% PEG 3350, 0.2M POTASSIUM REMARK 280 THIOCYANATE, 0.1M HEPES PH 7.0, 10% ETHELENE GLYCOL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 198.15350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 297.23025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.07675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 297.23025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.07675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 198.15350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 9 REMARK 465 MET A 10 REMARK 465 ASP A 11 REMARK 465 LEU A 250 REMARK 465 GLY A 251 REMARK 465 GLN A 252 REMARK 465 GLU A 253 REMARK 465 ALA A 254 REMARK 465 ASP A 255 REMARK 465 LYS A 256 REMARK 465 GLY A 257 REMARK 465 LEU A 258 REMARK 465 SER A 259 REMARK 465 GLY A 260 REMARK 465 MET A 321 REMARK 465 GLY A 322 REMARK 465 VAL A 323 REMARK 465 TRP A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 THR A 456 REMARK 465 CYS A 457 REMARK 465 ILE A 458 REMARK 465 GLY A 459 REMARK 465 PRO A 460 REMARK 465 SER A 461 REMARK 465 GLN A 462 REMARK 465 GLY A 463 REMARK 465 ASN A 464 REMARK 465 GLY A 465 REMARK 465 PHE A 466 REMARK 465 ASP A 467 REMARK 465 PRO A 468 REMARK 465 GLU A 469 REMARK 465 LEU A 470 REMARK 465 TYR A 471 REMARK 465 GLU A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 ARG A 475 REMARK 465 LYS A 476 REMARK 465 GLY A 477 REMARK 465 TYR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 PHE A 481 REMARK 465 SER A 482 REMARK 465 ARG A 483 REMARK 465 TYR A 484 REMARK 465 ASP A 485 REMARK 465 GLU A 486 REMARK 465 GLY A 487 REMARK 465 SER A 488 REMARK 465 GLY A 489 REMARK 465 GLY A 490 REMARK 465 SER A 491 REMARK 465 GLY A 492 REMARK 465 ASP A 493 REMARK 465 GLU A 494 REMARK 465 GLY A 495 REMARK 465 ARG A 496 REMARK 465 ASP A 497 REMARK 465 GLU A 498 REMARK 465 ALA A 499 REMARK 465 HIS A 500 REMARK 465 LYS A 501 REMARK 465 ARG A 502 REMARK 465 GLU A 503 REMARK 465 TRP A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 PHE A 507 REMARK 465 TYR A 508 REMARK 465 GLN A 509 REMARK 465 LYS A 510 REMARK 465 GLN A 511 REMARK 465 MET A 512 REMARK 465 GLN A 513 REMARK 465 LEU A 514 REMARK 465 ARG A 515 REMARK 465 LYS A 516 REMARK 465 GLY A 517 REMARK 465 LYS A 518 REMARK 465 ASP A 519 REMARK 465 PRO A 520 REMARK 465 LYS A 521 REMARK 465 ILE A 522 REMARK 465 GLU A 523 REMARK 465 GLU A 524 REMARK 465 PHE A 525 REMARK 465 VAL A 526 REMARK 465 SER D 9 REMARK 465 MET D 10 REMARK 465 ASP D 11 REMARK 465 LEU D 250 REMARK 465 GLY D 251 REMARK 465 GLN D 252 REMARK 465 GLU D 253 REMARK 465 ALA D 254 REMARK 465 ASP D 255 REMARK 465 LYS D 256 REMARK 465 GLY D 257 REMARK 465 LEU D 258 REMARK 465 SER D 259 REMARK 465 GLY D 260 REMARK 465 GLY D 320 REMARK 465 MET D 321 REMARK 465 GLY D 322 REMARK 465 VAL D 323 REMARK 465 TRP D 453 REMARK 465 SER D 454 REMARK 465 LYS D 455 REMARK 465 THR D 456 REMARK 465 CYS D 457 REMARK 465 ILE D 458 REMARK 465 GLY D 459 REMARK 465 PRO D 460 REMARK 465 SER D 461 REMARK 465 GLN D 462 REMARK 465 GLY D 463 REMARK 465 ASN D 464 REMARK 465 GLY D 465 REMARK 465 PHE D 466 REMARK 465 ASP D 467 REMARK 465 PRO D 468 REMARK 465 GLU D 469 REMARK 465 LEU D 470 REMARK 465 TYR D 471 REMARK 465 GLU D 472 REMARK 465 GLY D 473 REMARK 465 GLY D 474 REMARK 465 ARG D 475 REMARK 465 LYS D 476 REMARK 465 GLY D 477 REMARK 465 TYR D 478 REMARK 465 GLY D 479 REMARK 465 ASP D 480 REMARK 465 PHE D 481 REMARK 465 SER D 482 REMARK 465 ARG D 483 REMARK 465 TYR D 484 REMARK 465 ASP D 485 REMARK 465 GLU D 486 REMARK 465 GLY D 487 REMARK 465 SER D 488 REMARK 465 GLY D 489 REMARK 465 GLY D 490 REMARK 465 SER D 491 REMARK 465 GLY D 492 REMARK 465 ASP D 493 REMARK 465 GLU D 494 REMARK 465 GLY D 495 REMARK 465 ARG D 496 REMARK 465 ASP D 497 REMARK 465 GLU D 498 REMARK 465 ALA D 499 REMARK 465 HIS D 500 REMARK 465 LYS D 501 REMARK 465 ARG D 502 REMARK 465 GLU D 503 REMARK 465 TRP D 504 REMARK 465 ASN D 505 REMARK 465 LEU D 506 REMARK 465 PHE D 507 REMARK 465 TYR D 508 REMARK 465 GLN D 509 REMARK 465 LYS D 510 REMARK 465 GLN D 511 REMARK 465 MET D 512 REMARK 465 GLN D 513 REMARK 465 LEU D 514 REMARK 465 ARG D 515 REMARK 465 LYS D 516 REMARK 465 GLY D 517 REMARK 465 LYS D 518 REMARK 465 ASP D 519 REMARK 465 PRO D 520 REMARK 465 LYS D 521 REMARK 465 ILE D 522 REMARK 465 GLU D 523 REMARK 465 GLU D 524 REMARK 465 PHE D 525 REMARK 465 VAL D 526 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 393 CD CE NZ REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 ARG A 449 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 LYS D 94 CG CD CE NZ REMARK 470 LYS D 103 CG CD CE NZ REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 LYS D 210 CG CD CE NZ REMARK 470 LYS D 393 CD CE NZ REMARK 470 LYS D 429 CG CD CE NZ REMARK 470 ARG D 442 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 24 -66.70 -91.45 REMARK 500 LYS A 94 67.01 62.40 REMARK 500 LYS A 120 73.28 51.94 REMARK 500 LEU A 183 74.32 -109.50 REMARK 500 VAL A 284 95.62 -67.76 REMARK 500 GLU A 308 24.52 44.09 REMARK 500 THR A 316 -160.38 -105.17 REMARK 500 VAL D 23 -72.71 -107.65 REMARK 500 ALA D 56 -49.54 -132.70 REMARK 500 LYS D 120 72.94 52.76 REMARK 500 HIS D 160 -18.24 -48.31 REMARK 500 LEU D 183 74.11 -119.23 REMARK 500 VAL D 284 97.89 -69.15 REMARK 500 GLU D 308 9.28 53.64 REMARK 500 THR D 316 -159.92 -104.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 411 SG REMARK 620 2 CYS A 431 SG 109.6 REMARK 620 3 CYS A 434 SG 132.4 114.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 411 SG REMARK 620 2 CYS D 431 SG 95.4 REMARK 620 3 CYS D 434 SG 140.2 104.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 601 DBREF 5LB8 A 11 526 UNP O94762 RECQ5_HUMAN 11 526 DBREF 5LB8 D 11 526 UNP O94762 RECQ5_HUMAN 11 526 SEQADV 5LB8 SER A 9 UNP O94762 EXPRESSION TAG SEQADV 5LB8 MET A 10 UNP O94762 EXPRESSION TAG SEQADV 5LB8 SER D 9 UNP O94762 EXPRESSION TAG SEQADV 5LB8 MET D 10 UNP O94762 EXPRESSION TAG SEQRES 1 A 518 SER MET ASP PRO GLU ARG ARG VAL ARG SER THR LEU LYS SEQRES 2 A 518 LYS VAL PHE GLY PHE ASP SER PHE LYS THR PRO LEU GLN SEQRES 3 A 518 GLU SER ALA THR MET ALA VAL VAL LYS GLY ASN LYS ASP SEQRES 4 A 518 VAL PHE VAL CYS MET PRO THR GLY ALA GLY LYS SER LEU SEQRES 5 A 518 CYS TYR GLN LEU PRO ALA LEU LEU ALA LYS GLY ILE THR SEQRES 6 A 518 ILE VAL VAL SER PRO LEU ILE ALA LEU ILE GLN ASP GLN SEQRES 7 A 518 VAL ASP HIS LEU LEU THR LEU LYS VAL ARG VAL SER SER SEQRES 8 A 518 LEU ASN SER LYS LEU SER ALA GLN GLU ARG LYS GLU LEU SEQRES 9 A 518 LEU ALA ASP LEU GLU ARG GLU LYS PRO GLN THR LYS ILE SEQRES 10 A 518 LEU TYR ILE THR PRO GLU MET ALA ALA SER SER SER PHE SEQRES 11 A 518 GLN PRO THR LEU ASN SER LEU VAL SER ARG HIS LEU LEU SEQRES 12 A 518 SER TYR LEU VAL VAL ASP GLU ALA HIS CYS VAL SER GLN SEQRES 13 A 518 TRP GLY HIS ASP PHE ARG PRO ASP TYR LEU ARG LEU GLY SEQRES 14 A 518 ALA LEU ARG SER ARG LEU GLY HIS ALA PRO CYS VAL ALA SEQRES 15 A 518 LEU THR ALA THR ALA THR PRO GLN VAL GLN GLU ASP VAL SEQRES 16 A 518 PHE ALA ALA LEU HIS LEU LYS LYS PRO VAL ALA ILE PHE SEQRES 17 A 518 LYS THR PRO CYS PHE ARG ALA ASN LEU PHE TYR ASP VAL SEQRES 18 A 518 GLN PHE LYS GLU LEU ILE SER ASP PRO TYR GLY ASN LEU SEQRES 19 A 518 LYS ASP PHE CYS LEU LYS ALA LEU GLY GLN GLU ALA ASP SEQRES 20 A 518 LYS GLY LEU SER GLY CYS GLY ILE VAL TYR CYS ARG THR SEQRES 21 A 518 ARG GLU ALA CYS GLU GLN LEU ALA ILE GLU LEU SER CYS SEQRES 22 A 518 ARG GLY VAL ASN ALA LYS ALA TYR HIS ALA GLY LEU LYS SEQRES 23 A 518 ALA SER GLU ARG THR LEU VAL GLN ASN ASP TRP MET GLU SEQRES 24 A 518 GLU LYS VAL PRO VAL ILE VAL ALA THR ILE SER PHE GLY SEQRES 25 A 518 MET GLY VAL ASP LYS ALA ASN VAL ARG PHE VAL ALA HIS SEQRES 26 A 518 TRP ASN ILE ALA LYS SER MET ALA GLY TYR TYR GLN GLU SEQRES 27 A 518 SER GLY ARG ALA GLY ARG ASP GLY LYS PRO SER TRP CYS SEQRES 28 A 518 ARG LEU TYR TYR SER ARG ASN ASP ARG ASP GLN VAL SER SEQRES 29 A 518 PHE LEU ILE ARG LYS GLU VAL ALA LYS LEU GLN GLU LYS SEQRES 30 A 518 ARG GLY ASN LYS ALA SER ASP LYS ALA THR ILE MET ALA SEQRES 31 A 518 PHE ASP ALA LEU VAL THR PHE CYS GLU GLU LEU GLY CYS SEQRES 32 A 518 ARG HIS ALA ALA ILE ALA LYS TYR PHE GLY ASP ALA LEU SEQRES 33 A 518 PRO ALA CYS ALA LYS GLY CYS ASP HIS CYS GLN ASN PRO SEQRES 34 A 518 THR ALA VAL ARG ARG ARG LEU GLU ALA LEU GLU ARG SER SEQRES 35 A 518 SER SER TRP SER LYS THR CYS ILE GLY PRO SER GLN GLY SEQRES 36 A 518 ASN GLY PHE ASP PRO GLU LEU TYR GLU GLY GLY ARG LYS SEQRES 37 A 518 GLY TYR GLY ASP PHE SER ARG TYR ASP GLU GLY SER GLY SEQRES 38 A 518 GLY SER GLY ASP GLU GLY ARG ASP GLU ALA HIS LYS ARG SEQRES 39 A 518 GLU TRP ASN LEU PHE TYR GLN LYS GLN MET GLN LEU ARG SEQRES 40 A 518 LYS GLY LYS ASP PRO LYS ILE GLU GLU PHE VAL SEQRES 1 D 518 SER MET ASP PRO GLU ARG ARG VAL ARG SER THR LEU LYS SEQRES 2 D 518 LYS VAL PHE GLY PHE ASP SER PHE LYS THR PRO LEU GLN SEQRES 3 D 518 GLU SER ALA THR MET ALA VAL VAL LYS GLY ASN LYS ASP SEQRES 4 D 518 VAL PHE VAL CYS MET PRO THR GLY ALA GLY LYS SER LEU SEQRES 5 D 518 CYS TYR GLN LEU PRO ALA LEU LEU ALA LYS GLY ILE THR SEQRES 6 D 518 ILE VAL VAL SER PRO LEU ILE ALA LEU ILE GLN ASP GLN SEQRES 7 D 518 VAL ASP HIS LEU LEU THR LEU LYS VAL ARG VAL SER SER SEQRES 8 D 518 LEU ASN SER LYS LEU SER ALA GLN GLU ARG LYS GLU LEU SEQRES 9 D 518 LEU ALA ASP LEU GLU ARG GLU LYS PRO GLN THR LYS ILE SEQRES 10 D 518 LEU TYR ILE THR PRO GLU MET ALA ALA SER SER SER PHE SEQRES 11 D 518 GLN PRO THR LEU ASN SER LEU VAL SER ARG HIS LEU LEU SEQRES 12 D 518 SER TYR LEU VAL VAL ASP GLU ALA HIS CYS VAL SER GLN SEQRES 13 D 518 TRP GLY HIS ASP PHE ARG PRO ASP TYR LEU ARG LEU GLY SEQRES 14 D 518 ALA LEU ARG SER ARG LEU GLY HIS ALA PRO CYS VAL ALA SEQRES 15 D 518 LEU THR ALA THR ALA THR PRO GLN VAL GLN GLU ASP VAL SEQRES 16 D 518 PHE ALA ALA LEU HIS LEU LYS LYS PRO VAL ALA ILE PHE SEQRES 17 D 518 LYS THR PRO CYS PHE ARG ALA ASN LEU PHE TYR ASP VAL SEQRES 18 D 518 GLN PHE LYS GLU LEU ILE SER ASP PRO TYR GLY ASN LEU SEQRES 19 D 518 LYS ASP PHE CYS LEU LYS ALA LEU GLY GLN GLU ALA ASP SEQRES 20 D 518 LYS GLY LEU SER GLY CYS GLY ILE VAL TYR CYS ARG THR SEQRES 21 D 518 ARG GLU ALA CYS GLU GLN LEU ALA ILE GLU LEU SER CYS SEQRES 22 D 518 ARG GLY VAL ASN ALA LYS ALA TYR HIS ALA GLY LEU LYS SEQRES 23 D 518 ALA SER GLU ARG THR LEU VAL GLN ASN ASP TRP MET GLU SEQRES 24 D 518 GLU LYS VAL PRO VAL ILE VAL ALA THR ILE SER PHE GLY SEQRES 25 D 518 MET GLY VAL ASP LYS ALA ASN VAL ARG PHE VAL ALA HIS SEQRES 26 D 518 TRP ASN ILE ALA LYS SER MET ALA GLY TYR TYR GLN GLU SEQRES 27 D 518 SER GLY ARG ALA GLY ARG ASP GLY LYS PRO SER TRP CYS SEQRES 28 D 518 ARG LEU TYR TYR SER ARG ASN ASP ARG ASP GLN VAL SER SEQRES 29 D 518 PHE LEU ILE ARG LYS GLU VAL ALA LYS LEU GLN GLU LYS SEQRES 30 D 518 ARG GLY ASN LYS ALA SER ASP LYS ALA THR ILE MET ALA SEQRES 31 D 518 PHE ASP ALA LEU VAL THR PHE CYS GLU GLU LEU GLY CYS SEQRES 32 D 518 ARG HIS ALA ALA ILE ALA LYS TYR PHE GLY ASP ALA LEU SEQRES 33 D 518 PRO ALA CYS ALA LYS GLY CYS ASP HIS CYS GLN ASN PRO SEQRES 34 D 518 THR ALA VAL ARG ARG ARG LEU GLU ALA LEU GLU ARG SER SEQRES 35 D 518 SER SER TRP SER LYS THR CYS ILE GLY PRO SER GLN GLY SEQRES 36 D 518 ASN GLY PHE ASP PRO GLU LEU TYR GLU GLY GLY ARG LYS SEQRES 37 D 518 GLY TYR GLY ASP PHE SER ARG TYR ASP GLU GLY SER GLY SEQRES 38 D 518 GLY SER GLY ASP GLU GLY ARG ASP GLU ALA HIS LYS ARG SEQRES 39 D 518 GLU TRP ASN LEU PHE TYR GLN LYS GLN MET GLN LEU ARG SEQRES 40 D 518 LYS GLY LYS ASP PRO LYS ILE GLU GLU PHE VAL HET ZN A 601 1 HET ZN D 601 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 PRO A 12 PHE A 24 1 13 HELIX 2 AA2 THR A 31 GLY A 44 1 14 HELIX 3 AA3 GLY A 55 ALA A 69 1 15 HELIX 4 AA4 LEU A 79 THR A 92 1 14 HELIX 5 AA5 SER A 105 GLU A 117 1 13 HELIX 6 AA6 THR A 129 ALA A 134 1 6 HELIX 7 AA7 PHE A 138 SER A 147 1 10 HELIX 8 AA8 GLU A 158 SER A 163 5 6 HELIX 9 AA9 ARG A 170 LEU A 174 5 5 HELIX 10 AB1 ARG A 175 LEU A 183 1 9 HELIX 11 AB2 THR A 196 LEU A 207 1 12 HELIX 12 AB3 ASP A 237 LYS A 248 1 12 HELIX 13 AB4 THR A 268 CYS A 281 1 14 HELIX 14 AB5 LYS A 294 GLU A 307 1 14 HELIX 15 AB6 SER A 339 GLY A 348 1 10 HELIX 16 AB7 SER A 364 GLU A 384 1 21 HELIX 17 AB8 LYS A 389 GLU A 408 1 20 HELIX 18 AB9 CYS A 411 GLY A 421 1 11 HELIX 19 AC1 CYS A 431 ASN A 436 1 6 HELIX 20 AC2 THR A 438 SER A 450 1 13 HELIX 21 AC3 GLU D 13 VAL D 23 1 11 HELIX 22 AC4 THR D 31 GLY D 44 1 14 HELIX 23 AC5 ALA D 56 ALA D 69 1 14 HELIX 24 AC6 LEU D 79 LEU D 93 1 15 HELIX 25 AC7 SER D 105 ARG D 118 1 14 HELIX 26 AC8 THR D 129 ALA D 134 1 6 HELIX 27 AC9 PHE D 138 SER D 147 1 10 HELIX 28 AD1 ALA D 159 SER D 163 5 5 HELIX 29 AD2 ARG D 170 LEU D 174 5 5 HELIX 30 AD3 ARG D 175 LEU D 183 1 9 HELIX 31 AD4 THR D 196 LEU D 207 1 12 HELIX 32 AD5 GLU D 233 ILE D 235 5 3 HELIX 33 AD6 ASP D 237 LYS D 248 1 12 HELIX 34 AD7 THR D 268 ARG D 282 1 15 HELIX 35 AD8 LYS D 294 GLU D 307 1 14 HELIX 36 AD9 SER D 339 GLY D 348 1 10 HELIX 37 AE1 SER D 364 GLU D 384 1 21 HELIX 38 AE2 LYS D 389 GLU D 408 1 20 HELIX 39 AE3 CYS D 411 GLY D 421 1 11 HELIX 40 AE4 CYS D 431 ASN D 436 1 6 HELIX 41 AE5 THR D 438 SER D 450 1 13 SHEET 1 AA1 7 VAL A 97 LEU A 100 0 SHEET 2 AA1 7 ILE A 125 ILE A 128 1 O TYR A 127 N LEU A 100 SHEET 3 AA1 7 ILE A 72 VAL A 76 1 N VAL A 75 O LEU A 126 SHEET 4 AA1 7 LEU A 151 VAL A 156 1 O VAL A 155 N ILE A 74 SHEET 5 AA1 7 CYS A 188 THR A 192 1 O VAL A 189 N LEU A 154 SHEET 6 AA1 7 ASP A 47 CYS A 51 1 N VAL A 50 O ALA A 190 SHEET 7 AA1 7 VAL A 213 LYS A 217 1 O PHE A 216 N PHE A 49 SHEET 1 AA2 2 LEU A 225 PHE A 231 0 SHEET 2 AA2 2 SER A 357 TYR A 363 1 O CYS A 359 N PHE A 226 SHEET 1 AA3 4 ALA A 286 TYR A 289 0 SHEET 2 AA3 4 VAL A 312 ALA A 315 1 O VAL A 314 N LYS A 287 SHEET 3 AA3 4 GLY A 262 TYR A 265 1 N VAL A 264 O ILE A 313 SHEET 4 AA3 4 VAL A 331 HIS A 333 1 O ALA A 332 N TYR A 265 SHEET 1 AA4 7 VAL D 97 LEU D 100 0 SHEET 2 AA4 7 ILE D 125 ILE D 128 1 O TYR D 127 N LEU D 100 SHEET 3 AA4 7 ILE D 72 VAL D 76 1 N VAL D 75 O LEU D 126 SHEET 4 AA4 7 LEU D 151 ASP D 157 1 O VAL D 155 N ILE D 74 SHEET 5 AA4 7 CYS D 188 THR D 192 1 O VAL D 189 N LEU D 154 SHEET 6 AA4 7 ASP D 47 CYS D 51 1 N VAL D 50 O ALA D 190 SHEET 7 AA4 7 VAL D 213 LYS D 217 1 O PHE D 216 N PHE D 49 SHEET 1 AA5 2 LEU D 225 PHE D 231 0 SHEET 2 AA5 2 SER D 357 TYR D 363 1 O CYS D 359 N PHE D 226 SHEET 1 AA6 4 ALA D 286 TYR D 289 0 SHEET 2 AA6 4 VAL D 312 ALA D 315 1 O VAL D 314 N LYS D 287 SHEET 3 AA6 4 GLY D 262 TYR D 265 1 N VAL D 264 O ILE D 313 SHEET 4 AA6 4 VAL D 331 HIS D 333 1 O ALA D 332 N TYR D 265 LINK SG CYS A 411 ZN ZN A 601 1555 1555 2.17 LINK SG CYS A 431 ZN ZN A 601 1555 1555 2.55 LINK SG CYS A 434 ZN ZN A 601 1555 1555 2.49 LINK SG CYS D 411 ZN ZN D 601 1555 1555 2.17 LINK SG CYS D 431 ZN ZN D 601 1555 1555 2.98 LINK SG CYS D 434 ZN ZN D 601 1555 1555 2.35 CISPEP 1 LYS A 211 PRO A 212 0 0.11 CISPEP 2 LYS D 211 PRO D 212 0 0.15 SITE 1 AC1 3 CYS A 411 CYS A 431 CYS A 434 SITE 1 AC2 4 CYS D 411 CYS D 427 CYS D 431 CYS D 434 CRYST1 68.740 68.740 396.307 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002523 0.00000