HEADER OXIDOREDUCTASE 15-JUN-16 5LBB TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) R396T VARIANT IN COMPLEX WITH TITLE 2 MN(II) AND N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE TITLE 3 (IOX3/UN9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 181-426; COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 6 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.J.SCHOFIELD REVDAT 4 23-OCT-24 5LBB 1 REMARK REVDAT 3 10-JAN-24 5LBB 1 LINK REVDAT 2 07-SEP-16 5LBB 1 JRNL REVDAT 1 31-AUG-16 5LBB 0 JRNL AUTH R.CHOWDHURY,I.K.LEUNG,Y.M.TIAN,M.I.ABBOUD,W.GE,C.DOMENE, JRNL AUTH 2 F.X.CANTRELLE,I.LANDRIEU,A.P.HARDY,C.W.PUGH,P.J.RATCLIFFE, JRNL AUTH 3 T.D.CLARIDGE,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR OXYGEN DEGRADATION DOMAIN SELECTIVITY JRNL TITL 2 OF THE HIF PROLYL HYDROXYLASES. JRNL REF NAT COMMUN V. 7 12673 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27561929 JRNL DOI 10.1038/NCOMMS12673 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 1 REFERENCE 2 REMARK 1 AUTH R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN, REMARK 1 AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO REMARK 1 TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES. REMARK 1 REF STRUCTURE V. 17 981 2009 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 19604478 REMARK 1 DOI 10.1016/J.STR.2009.06.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 29896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0792 - 3.7795 0.96 2645 130 0.1406 0.1475 REMARK 3 2 3.7795 - 3.0004 0.95 2524 140 0.1430 0.1748 REMARK 3 3 3.0004 - 2.6213 0.96 2553 142 0.1582 0.1942 REMARK 3 4 2.6213 - 2.3816 0.98 2594 144 0.1549 0.1918 REMARK 3 5 2.3816 - 2.2110 0.98 2588 135 0.1449 0.1649 REMARK 3 6 2.2110 - 2.0806 0.98 2588 132 0.1531 0.1911 REMARK 3 7 2.0806 - 1.9764 0.99 2620 123 0.1634 0.2304 REMARK 3 8 1.9764 - 1.8904 0.99 2572 146 0.1827 0.2030 REMARK 3 9 1.8904 - 1.8176 0.98 2583 153 0.1926 0.2300 REMARK 3 10 1.8176 - 1.7549 0.98 2577 125 0.2109 0.2379 REMARK 3 11 1.7549 - 1.7000 0.97 2552 130 0.2369 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 59.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 3.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1857 REMARK 3 ANGLE : 1.451 2522 REMARK 3 CHIRALITY : 0.079 268 REMARK 3 PLANARITY : 0.011 334 REMARK 3 DIHEDRAL : 16.465 1100 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3028 -33.6530 -1.6134 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.5001 REMARK 3 T33: 0.4006 T12: -0.0119 REMARK 3 T13: 0.1046 T23: 0.1241 REMARK 3 L TENSOR REMARK 3 L11: 0.2265 L22: 2.5325 REMARK 3 L33: 0.2381 L12: 0.2899 REMARK 3 L13: 0.1622 L23: 0.6264 REMARK 3 S TENSOR REMARK 3 S11: 0.1796 S12: 0.3318 S13: 0.3427 REMARK 3 S21: 0.2657 S22: 0.3869 S23: -0.2988 REMARK 3 S31: -0.2866 S32: -0.8035 S33: 0.2095 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 205:215) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7357 -32.4281 0.1593 REMARK 3 T TENSOR REMARK 3 T11: 0.3796 T22: 0.2852 REMARK 3 T33: 0.3368 T12: -0.1308 REMARK 3 T13: 0.0374 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 0.8587 L22: 0.7919 REMARK 3 L33: 0.5437 L12: -0.4617 REMARK 3 L13: -0.3692 L23: 0.4589 REMARK 3 S TENSOR REMARK 3 S11: -0.2629 S12: 0.1413 S13: 0.4880 REMARK 3 S21: -0.1305 S22: 0.2429 S23: -0.4648 REMARK 3 S31: -0.2076 S32: 0.5514 S33: 0.1536 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 216:232) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2286 -34.3085 -11.3347 REMARK 3 T TENSOR REMARK 3 T11: 0.4544 T22: 0.4230 REMARK 3 T33: 0.3835 T12: 0.0497 REMARK 3 T13: -0.0370 T23: 0.1561 REMARK 3 L TENSOR REMARK 3 L11: 0.4037 L22: 0.9788 REMARK 3 L33: 0.7512 L12: -0.4292 REMARK 3 L13: -0.1105 L23: 0.5677 REMARK 3 S TENSOR REMARK 3 S11: -0.2610 S12: 0.0581 S13: 0.3249 REMARK 3 S21: -0.6973 S22: -0.1686 S23: 0.4423 REMARK 3 S31: -0.2313 S32: 0.0423 S33: -0.2200 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 233:266) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3438 -47.7321 -1.8283 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.3890 REMARK 3 T33: 0.3814 T12: -0.0203 REMARK 3 T13: 0.0482 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.3827 L22: 1.0499 REMARK 3 L33: 0.8597 L12: 0.2357 REMARK 3 L13: 1.1574 L23: 0.3511 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.2886 S13: -0.1486 REMARK 3 S21: 0.0508 S22: -0.1812 S23: 0.4567 REMARK 3 S31: 0.0857 S32: -0.6425 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 267:283) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2564 -39.8682 -11.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.3953 T22: 0.5145 REMARK 3 T33: 0.3458 T12: -0.0219 REMARK 3 T13: 0.0737 T23: 0.1091 REMARK 3 L TENSOR REMARK 3 L11: 0.0650 L22: 1.0127 REMARK 3 L33: 0.3046 L12: -0.0757 REMARK 3 L13: -0.0003 L23: 0.5278 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.5262 S13: 0.1300 REMARK 3 S21: -0.2758 S22: -0.0412 S23: -0.5615 REMARK 3 S31: -0.4709 S32: 0.0857 S33: 0.0229 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 284:293) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9638 -47.1395 -2.1559 REMARK 3 T TENSOR REMARK 3 T11: 0.4527 T22: 0.4481 REMARK 3 T33: 0.4953 T12: 0.0272 REMARK 3 T13: 0.0236 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.1168 L22: 0.1985 REMARK 3 L33: 0.0917 L12: -0.0800 REMARK 3 L13: -0.1114 L23: 0.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.1797 S12: 0.1777 S13: 0.0975 REMARK 3 S21: 0.5843 S22: 0.1264 S23: -0.7335 REMARK 3 S31: 0.1542 S32: 0.4437 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 294:306) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8890 -43.8259 -2.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2930 REMARK 3 T33: 0.3132 T12: 0.0159 REMARK 3 T13: 0.0541 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.3687 L22: 0.3543 REMARK 3 L33: 0.5482 L12: 0.2798 REMARK 3 L13: 0.4972 L23: 0.4685 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: 0.1000 S13: 0.0223 REMARK 3 S21: -0.0447 S22: -0.0104 S23: 0.1247 REMARK 3 S31: -0.0060 S32: -0.0874 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:320) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1379 -48.5858 9.4605 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.2819 REMARK 3 T33: 0.2998 T12: 0.0308 REMARK 3 T13: 0.0897 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 0.6011 L22: 0.6148 REMARK 3 L33: 0.7489 L12: 0.2480 REMARK 3 L13: -0.1886 L23: 0.0730 REMARK 3 S TENSOR REMARK 3 S11: -0.2214 S12: -0.2458 S13: -0.7736 REMARK 3 S21: 0.1937 S22: -0.0324 S23: 0.2904 REMARK 3 S31: 0.2762 S32: 0.0416 S33: -0.0050 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 321:335) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4341 -36.8447 -0.0645 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.2224 REMARK 3 T33: 0.2674 T12: 0.0145 REMARK 3 T13: 0.0575 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 0.9013 L22: 0.7051 REMARK 3 L33: 0.9845 L12: 0.8737 REMARK 3 L13: 0.2045 L23: 0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.1747 S12: 0.0209 S13: 0.3022 REMARK 3 S21: 0.1501 S22: 0.0863 S23: -0.2169 REMARK 3 S31: -0.2084 S32: 0.0864 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 336:350) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6174 -36.1967 12.7345 REMARK 3 T TENSOR REMARK 3 T11: 0.3504 T22: 0.3291 REMARK 3 T33: 0.2843 T12: 0.0578 REMARK 3 T13: 0.0075 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.2215 L22: 0.6399 REMARK 3 L33: 0.4262 L12: 0.3420 REMARK 3 L13: 0.0502 L23: 0.4054 REMARK 3 S TENSOR REMARK 3 S11: -0.1968 S12: -0.4991 S13: 0.3247 REMARK 3 S21: 0.5637 S22: 0.1706 S23: -0.3065 REMARK 3 S31: -0.3052 S32: -0.0073 S33: 0.0045 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 351:361) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8355 -32.1422 8.0304 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.3283 REMARK 3 T33: 0.3256 T12: -0.0348 REMARK 3 T13: -0.0013 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.5024 L22: 0.4548 REMARK 3 L33: 0.2366 L12: 0.0250 REMARK 3 L13: -0.2144 L23: 0.2915 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.1212 S13: 0.5090 REMARK 3 S21: 0.3752 S22: -0.3359 S23: -0.1119 REMARK 3 S31: -0.8951 S32: 0.4994 S33: 0.0007 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 362:371) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7861 -43.0095 5.9328 REMARK 3 T TENSOR REMARK 3 T11: 0.2783 T22: 0.2788 REMARK 3 T33: 0.2940 T12: 0.0064 REMARK 3 T13: 0.0313 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.2000 L22: 0.1343 REMARK 3 L33: -0.0186 L12: 0.0047 REMARK 3 L13: 0.0970 L23: 0.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: 0.0348 S13: -0.0484 REMARK 3 S21: -0.1018 S22: -0.0261 S23: -0.2217 REMARK 3 S31: -0.0299 S32: 0.3359 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 372:381) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5386 -39.0326 10.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.3216 REMARK 3 T33: 0.2913 T12: 0.0531 REMARK 3 T13: 0.0828 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.6999 L22: 0.8262 REMARK 3 L33: 0.2330 L12: 0.4395 REMARK 3 L13: -0.1165 L23: 0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.7985 S13: 0.3905 REMARK 3 S21: 0.2820 S22: -0.0551 S23: -0.0438 REMARK 3 S31: -0.0355 S32: -0.1273 S33: 0.0291 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 382:392) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1558 -43.3870 -2.1691 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.2332 REMARK 3 T33: 0.2635 T12: 0.0165 REMARK 3 T13: 0.0613 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.4818 L22: 0.8855 REMARK 3 L33: 0.2998 L12: 0.6837 REMARK 3 L13: 0.2162 L23: 0.5233 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: 0.1456 S13: 0.1250 REMARK 3 S21: -0.1807 S22: -0.0993 S23: -0.1665 REMARK 3 S31: -0.1194 S32: -0.0079 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 393:405) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3678 -61.9708 -0.7727 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.3359 REMARK 3 T33: 0.4547 T12: 0.0265 REMARK 3 T13: 0.0127 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.1964 L22: 0.2027 REMARK 3 L33: 0.2600 L12: -0.0843 REMARK 3 L13: -0.0188 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0093 S13: 0.1344 REMARK 3 S21: 0.0152 S22: 0.1809 S23: 0.5518 REMARK 3 S31: 0.5274 S32: -0.0277 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 411:417) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3574 -74.3541 -9.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.7164 T22: 0.5835 REMARK 3 T33: 0.5130 T12: -0.0243 REMARK 3 T13: -0.2097 T23: 0.2091 REMARK 3 L TENSOR REMARK 3 L11: 1.6444 L22: 0.7206 REMARK 3 L33: 0.3576 L12: 1.0840 REMARK 3 L13: 0.7630 L23: 0.4989 REMARK 3 S TENSOR REMARK 3 S11: -0.1028 S12: -0.7239 S13: 0.5677 REMARK 3 S21: -0.2761 S22: -0.1495 S23: 0.6579 REMARK 3 S31: 0.3516 S32: -0.8575 S33: 0.0334 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 2.1 M AMMONIUM REMARK 280 SULPHATE, 2% V/V DIOXANE, 0.002 M MNCL2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.85850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.85850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.85850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -55.09950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -95.43513 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 55.09950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -95.43513 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 THR A 185 OG1 CG2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 LYS A 234 CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 245 OG REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 255 NZ REMARK 470 LYS A 297 CE NZ REMARK 470 LYS A 332 NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 350 CD CE NZ REMARK 470 LYS A 359 CE NZ REMARK 470 LYS A 402 CD CE NZ REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 413 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 290 HH22 ARG A 371 1.26 REMARK 500 HH22 ARG A 312 O HOH A 606 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 190 5.23 -155.16 REMARK 500 TYR A 197 -55.76 -128.89 REMARK 500 PHE A 346 72.09 -119.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 91.3 REMARK 620 3 HIS A 374 NE2 87.6 88.2 REMARK 620 4 UN9 A 502 N8 87.6 116.9 154.5 REMARK 620 5 UN9 A 502 O13 100.3 165.6 83.8 72.5 REMARK 620 6 HOH A 641 O 169.9 84.1 101.2 86.5 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UN9 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQR RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 5L9B RELATED DB: PDB REMARK 900 RELATED ID: 5L9V RELATED DB: PDB REMARK 900 RELATED ID: 5L9R RELATED DB: PDB REMARK 900 RELATED ID: 5LA9 RELATED DB: PDB REMARK 900 RELATED ID: 5LAS RELATED DB: PDB REMARK 900 RELATED ID: 5LAT RELATED DB: PDB REMARK 900 RELATED ID: 5LB6 RELATED DB: PDB DBREF 5LBB A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 5LBB GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBB THR A 396 UNP Q9GZT9 ARG 396 ENGINEERED MUTATION SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 THR ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET UN9 A 502 27 HET BCT A 503 5 HETNAM MN MANGANESE (II) ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE HETNAM BCT BICARBONATE ION FORMUL 2 MN MN 2+ FORMUL 3 UN9 C12 H9 CL N2 O4 FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *122(H2 O) HELIX 1 AA1 ALA A 190 TYR A 197 1 8 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 CYS A 266 CYS A 283 1 18 HELIX 5 AA5 ASP A 335 GLY A 340 1 6 HELIX 6 AA6 ALA A 393 TYR A 403 1 11 SHEET 1 AA1 7 GLY A 183 GLN A 184 0 SHEET 2 AA1 7 ILE A 207 ASP A 211 1 O ASP A 211 N GLY A 183 SHEET 3 AA1 7 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 4 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 5 AA1 7 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 6 AA1 7 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 7 AA1 7 LYS A 255 ILE A 259 -1 N LYS A 255 O CYS A 302 SHEET 1 AA2 6 GLY A 183 GLN A 184 0 SHEET 2 AA2 6 ILE A 207 ASP A 211 1 O ASP A 211 N GLY A 183 SHEET 3 AA2 6 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 4 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 5 AA2 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 6 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 TYR A 310 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 VAL A 376 -1 O VAL A 376 N TYR A 310 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.13 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.23 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.21 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.23 LINK MN MN A 501 N8 UN9 A 502 1555 1555 2.37 LINK MN MN A 501 O13 UN9 A 502 1555 1555 2.22 LINK MN MN A 501 O HOH A 641 1555 1555 2.23 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 UN9 A 502 SITE 2 AC1 5 HOH A 641 SITE 1 AC2 16 ASP A 254 ILE A 256 MET A 299 TYR A 303 SITE 2 AC2 16 TYR A 310 HIS A 313 ASP A 315 TYR A 329 SITE 3 AC2 16 LEU A 343 HIS A 374 VAL A 376 ARG A 383 SITE 4 AC2 16 ARG A 398 MN A 501 HOH A 631 HOH A 641 SITE 1 AC3 3 LYS A 262 ARG A 312 PRO A 373 CRYST1 110.199 110.199 39.717 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009074 0.005239 0.000000 0.00000 SCALE2 0.000000 0.010478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025178 0.00000