HEADER OXIDOREDUCTASE 15-JUN-16 5LBC TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) I280V/R281L/I292V VARIANT IN TITLE 2 COMPLEX WITH MN(II) AND N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL) TITLE 3 CARBONYL]GLYCINE (IOX3/FG2216) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (181-426); COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 6 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: FRAGMENT: CATALYTIC DOMAIN (181-426) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.J.SCHOFIELD REVDAT 3 10-JAN-24 5LBC 1 LINK REVDAT 2 07-SEP-16 5LBC 1 JRNL REVDAT 1 31-AUG-16 5LBC 0 JRNL AUTH R.CHOWDHURY,I.K.LEUNG,Y.M.TIAN,M.I.ABBOUD,W.GE,C.DOMENE, JRNL AUTH 2 F.X.CANTRELLE,I.LANDRIEU,A.P.HARDY,C.W.PUGH,P.J.RATCLIFFE, JRNL AUTH 3 T.D.CLARIDGE,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR OXYGEN DEGRADATION DOMAIN SELECTIVITY JRNL TITL 2 OF THE HIF PROLYL HYDROXYLASES. JRNL REF NAT COMMUN V. 7 12673 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27561929 JRNL DOI 10.1038/NCOMMS12673 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 1 REFERENCE 2 REMARK 1 AUTH R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN, REMARK 1 AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO REMARK 1 TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES. REMARK 1 REF STRUCTURE V. 17 981 2009 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 19604478 REMARK 1 DOI 10.1016/J.STR.2009.06.002 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0838 - 3.9110 0.99 2527 147 0.1540 0.1904 REMARK 3 2 3.9110 - 3.1044 1.00 2462 135 0.1435 0.1577 REMARK 3 3 3.1044 - 2.7120 1.00 2460 146 0.1450 0.1836 REMARK 3 4 2.7120 - 2.4641 1.00 2463 122 0.1498 0.1932 REMARK 3 5 2.4641 - 2.2875 1.00 2455 122 0.1490 0.1505 REMARK 3 6 2.2875 - 2.1526 1.00 2459 133 0.1558 0.1633 REMARK 3 7 2.1526 - 2.0448 1.00 2382 156 0.1667 0.1778 REMARK 3 8 2.0448 - 1.9558 1.00 2417 147 0.1812 0.1872 REMARK 3 9 1.9558 - 1.8805 0.98 2385 145 0.2218 0.2405 REMARK 3 10 1.8805 - 1.8156 0.97 2392 107 0.2588 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 58.90 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1868 REMARK 3 ANGLE : 0.950 2543 REMARK 3 CHIRALITY : 0.055 271 REMARK 3 PLANARITY : 0.006 334 REMARK 3 DIHEDRAL : 15.204 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): 145.2256 64.3859 0.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.2331 T22: 0.3070 REMARK 3 T33: 0.4405 T12: 0.0511 REMARK 3 T13: 0.0651 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.3030 L22: 0.6275 REMARK 3 L33: 0.1397 L12: 0.1501 REMARK 3 L13: 0.1018 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.0711 S13: -0.4751 REMARK 3 S21: 0.0828 S22: 0.0349 S23: -0.4254 REMARK 3 S31: 0.0848 S32: 0.2219 S33: 0.0419 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 205:215) REMARK 3 ORIGIN FOR THE GROUP (A): 142.1282 73.2334 1.3330 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.2939 REMARK 3 T33: 0.3882 T12: 0.0086 REMARK 3 T13: 0.1410 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.6846 L22: 0.7994 REMARK 3 L33: 1.8921 L12: 0.6226 REMARK 3 L13: 0.2719 L23: 0.5607 REMARK 3 S TENSOR REMARK 3 S11: 0.2412 S12: 0.1632 S13: -0.2054 REMARK 3 S21: -0.1293 S22: 0.0509 S23: -0.8435 REMARK 3 S31: 0.4571 S32: 0.4522 S33: 0.4374 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 216:232) REMARK 3 ORIGIN FOR THE GROUP (A): 132.9240 86.6163 -10.2177 REMARK 3 T TENSOR REMARK 3 T11: 0.3955 T22: 0.2906 REMARK 3 T33: 0.3023 T12: -0.0792 REMARK 3 T13: 0.1346 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.2896 L22: 0.1235 REMARK 3 L33: 0.3273 L12: 0.1603 REMARK 3 L13: 0.2188 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.2393 S12: 0.4081 S13: 0.6795 REMARK 3 S21: -0.6908 S22: 0.1673 S23: -0.2428 REMARK 3 S31: -0.2956 S32: 0.1518 S33: -0.1032 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 233:266) REMARK 3 ORIGIN FOR THE GROUP (A): 118.0219 84.0729 -0.8568 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.2590 REMARK 3 T33: 0.2377 T12: 0.0339 REMARK 3 T13: -0.0132 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.3990 L22: 1.2619 REMARK 3 L33: 0.8061 L12: 0.7414 REMARK 3 L13: 0.8746 L23: -0.2856 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0049 S13: 0.3115 REMARK 3 S21: -0.1914 S22: -0.2168 S23: 0.5089 REMARK 3 S31: -0.2941 S32: -0.4461 S33: -0.0758 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 267:283) REMARK 3 ORIGIN FOR THE GROUP (A): 135.7475 69.6613 -9.5006 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2940 REMARK 3 T33: 0.3162 T12: 0.0204 REMARK 3 T13: 0.1615 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.4560 L22: 1.0804 REMARK 3 L33: 0.6939 L12: 0.6416 REMARK 3 L13: 0.6146 L23: 0.9265 REMARK 3 S TENSOR REMARK 3 S11: -0.1357 S12: 0.7266 S13: -0.5840 REMARK 3 S21: -0.8657 S22: 0.3259 S23: -0.4202 REMARK 3 S31: -0.3064 S32: 0.2550 S33: 0.2008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 284:293) REMARK 3 ORIGIN FOR THE GROUP (A): 134.3947 56.6173 -0.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.2708 REMARK 3 T33: 0.4473 T12: -0.0046 REMARK 3 T13: -0.0227 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.0632 REMARK 3 L33: -0.0048 L12: 0.0418 REMARK 3 L13: 0.0415 L23: 0.0682 REMARK 3 S TENSOR REMARK 3 S11: 0.6695 S12: -0.3334 S13: -0.5826 REMARK 3 S21: -0.1217 S22: -0.1438 S23: -0.6533 REMARK 3 S31: 0.4266 S32: 0.1842 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 294:306) REMARK 3 ORIGIN FOR THE GROUP (A): 125.2662 78.8889 -1.2107 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.1725 REMARK 3 T33: 0.1955 T12: 0.0019 REMARK 3 T13: 0.0022 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.2263 L22: 0.0531 REMARK 3 L33: 0.0764 L12: -0.0511 REMARK 3 L13: 0.1642 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.1185 S13: 0.1558 REMARK 3 S21: -0.1447 S22: 0.0845 S23: 0.1167 REMARK 3 S31: -0.1985 S32: 0.1457 S33: 0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:320) REMARK 3 ORIGIN FOR THE GROUP (A): 123.2216 72.3779 10.0676 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.2010 REMARK 3 T33: 0.2168 T12: -0.0231 REMARK 3 T13: 0.0525 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.4567 L22: 0.0852 REMARK 3 L33: 0.2049 L12: -0.0689 REMARK 3 L13: -0.1478 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.1953 S13: -0.0947 REMARK 3 S21: 0.2852 S22: -0.1445 S23: 0.5025 REMARK 3 S31: 0.0229 S32: -0.1844 S33: -0.0335 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 321:335) REMARK 3 ORIGIN FOR THE GROUP (A): 134.1541 78.1416 1.1506 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.1998 REMARK 3 T33: 0.2434 T12: -0.0387 REMARK 3 T13: 0.0639 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.9049 L22: 0.4157 REMARK 3 L33: 0.6298 L12: -0.3250 REMARK 3 L13: -0.3966 L23: -0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.2074 S13: -0.0243 REMARK 3 S21: -0.3612 S22: 0.0114 S23: -0.5012 REMARK 3 S31: 0.0797 S32: 0.2905 S33: 0.0486 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 336:350) REMARK 3 ORIGIN FOR THE GROUP (A): 134.7214 78.9801 13.8624 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2662 REMARK 3 T33: 0.2205 T12: -0.0388 REMARK 3 T13: -0.0798 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8833 L22: 0.2152 REMARK 3 L33: 0.1136 L12: -0.1314 REMARK 3 L13: -0.0171 L23: 0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.1344 S12: -0.5565 S13: 0.0679 REMARK 3 S21: 0.6865 S22: -0.1643 S23: -0.5817 REMARK 3 S31: 0.2412 S32: 0.0925 S33: 0.1189 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 351:361) REMARK 3 ORIGIN FOR THE GROUP (A): 138.7317 79.3686 8.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.3143 REMARK 3 T33: 0.2841 T12: -0.0434 REMARK 3 T13: -0.0385 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.1302 L22: 0.2743 REMARK 3 L33: 0.1100 L12: -0.1026 REMARK 3 L13: -0.0119 L23: 0.2160 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: -0.2973 S13: -0.0935 REMARK 3 S21: 0.1982 S22: -0.0837 S23: -0.8399 REMARK 3 S31: 0.1574 S32: 0.6269 S33: 0.0468 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 362:371) REMARK 3 ORIGIN FOR THE GROUP (A): 133.3686 68.1147 6.5409 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.1956 REMARK 3 T33: 0.2216 T12: 0.0089 REMARK 3 T13: 0.0173 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0873 L22: 0.1658 REMARK 3 L33: 0.0452 L12: -0.0374 REMARK 3 L13: 0.0464 L23: 0.1069 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.0881 S13: -0.2653 REMARK 3 S21: -0.1042 S22: 0.1117 S23: -0.3047 REMARK 3 S31: 0.1520 S32: 0.0059 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 372:381) REMARK 3 ORIGIN FOR THE GROUP (A): 129.4977 81.1328 11.8251 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.1922 REMARK 3 T33: 0.1506 T12: -0.0032 REMARK 3 T13: -0.0053 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.6665 L22: 0.1518 REMARK 3 L33: 0.1010 L12: 0.0185 REMARK 3 L13: -0.0263 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: -0.2463 S13: 0.1214 REMARK 3 S21: 0.4365 S22: 0.0071 S23: -0.1799 REMARK 3 S31: -0.2493 S32: 0.0061 S33: -0.0376 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 382:392) REMARK 3 ORIGIN FOR THE GROUP (A): 128.7539 73.8021 -0.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.1519 REMARK 3 T33: 0.1701 T12: -0.0077 REMARK 3 T13: 0.0256 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.4033 L22: 0.4357 REMARK 3 L33: -0.0292 L12: 0.0306 REMARK 3 L13: 0.0626 L23: 0.2158 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: 0.0330 S13: -0.1326 REMARK 3 S21: -0.2534 S22: 0.0115 S23: -0.2561 REMARK 3 S31: -0.0262 S32: 0.1197 S33: -0.0122 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 393:402) REMARK 3 ORIGIN FOR THE GROUP (A): 119.6414 55.2484 0.7607 REMARK 3 T TENSOR REMARK 3 T11: 0.2440 T22: 0.1969 REMARK 3 T33: 0.3221 T12: 0.0061 REMARK 3 T13: 0.0202 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.0335 L22: 0.0339 REMARK 3 L33: 0.0393 L12: -0.0498 REMARK 3 L13: 0.0182 L23: -0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -0.0567 S13: 0.3432 REMARK 3 S21: 0.4838 S22: 0.1100 S23: 0.1098 REMARK 3 S31: -0.0366 S32: -0.0847 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 706E REMARK 200 DATA SCALING SOFTWARE : HKL-2000 706E REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 48.067 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 1.8 M AMMONIUM REMARK 280 SULPHATE, 5% V/V DIOXANE, 0.002 M MNCL2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.14150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.14150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.14150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 THR A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 234 CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 332 NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 400 NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 410 CG1 CG2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -57.20 -133.10 REMARK 500 PHE A 346 73.73 -119.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 89.3 REMARK 620 3 HIS A 374 NE2 86.6 92.1 REMARK 620 4 UN9 A 503 N8 88.2 117.1 150.2 REMARK 620 5 UN9 A 503 O13 100.7 168.2 82.3 69.9 REMARK 620 6 HOH A 618 O 172.1 85.6 99.7 88.7 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UN9 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQR RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 5L9B RELATED DB: PDB REMARK 900 RELATED ID: 5L9V RELATED DB: PDB REMARK 900 RELATED ID: 5L9R RELATED DB: PDB REMARK 900 RELATED ID: 5LA9 RELATED DB: PDB REMARK 900 RELATED ID: 5LAS RELATED DB: PDB REMARK 900 RELATED ID: 5LAT RELATED DB: PDB REMARK 900 RELATED ID: 5LB6 RELATED DB: PDB REMARK 900 RELATED ID: 5LBB RELATED DB: PDB DBREF 5LBC A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 5LBC GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBC VAL A 280 UNP Q9GZT9 ILE 280 ENGINEERED MUTATION SEQADV 5LBC LEU A 281 UNP Q9GZT9 ARG 281 ENGINEERED MUTATION SEQADV 5LBC VAL A 292 UNP Q9GZT9 ILE 292 ENGINEERED MUTATION SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU VAL LEU HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 VAL ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET CL A 502 1 HET UN9 A 503 27 HET SO4 A 504 5 HET GOL A 505 13 HET GOL A 506 14 HET SO4 A 507 5 HET BCT A 508 5 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM BCT BICARBONATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN MN 2+ FORMUL 3 CL CL 1- FORMUL 4 UN9 C12 H9 CL N2 O4 FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 BCT C H O3 1- FORMUL 10 HOH *138(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 ASP A 246 ASP A 250 5 5 HELIX 5 AA5 CYS A 266 ASN A 284 1 19 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 LEU A 404 1 12 SHEET 1 AA1 6 ILE A 207 VAL A 210 0 SHEET 2 AA1 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA1 6 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 6 AA1 6 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 1 AA2 5 ILE A 207 VAL A 210 0 SHEET 2 AA2 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 5 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA2 5 VAL A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 TYR A 310 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 VAL A 376 -1 O VAL A 376 N TYR A 310 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.23 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.16 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.22 LINK MN MN A 501 N8 UN9 A 503 1555 1555 2.34 LINK MN MN A 501 O13 UN9 A 503 1555 1555 2.16 LINK MN MN A 501 O HOH A 618 1555 1555 2.26 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 UN9 A 503 SITE 2 AC1 5 HOH A 618 SITE 1 AC2 2 LYS A 204 HIS A 205 SITE 1 AC3 16 ASP A 254 ILE A 256 MET A 299 TYR A 303 SITE 2 AC3 16 TYR A 310 HIS A 313 ASP A 315 TYR A 329 SITE 3 AC3 16 LEU A 343 HIS A 374 VAL A 376 ARG A 383 SITE 4 AC3 16 ARG A 398 MN A 501 HOH A 618 HOH A 622 SITE 1 AC4 2 ARG A 396 ARG A 411 SITE 1 AC5 5 ASP A 355 ILE A 356 GLU A 357 LYS A 359 SITE 2 AC5 5 ARG A 362 SITE 1 AC6 5 TYR A 310 GLU A 375 VAL A 376 PRO A 378 SITE 2 AC6 5 HOH A 676 SITE 1 AC7 6 LYS A 332 ASP A 333 PHE A 360 HOH A 602 SITE 2 AC7 6 HOH A 607 HOH A 663 SITE 1 AC8 5 LYS A 262 ARG A 312 VAL A 314 PRO A 373 SITE 2 AC8 5 HOH A 604 CRYST1 111.006 111.006 40.283 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009009 0.005201 0.000000 0.00000 SCALE2 0.000000 0.010402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024824 0.00000