HEADER HYDROLASE 15-JUN-16 5LBD TITLE CRYSTAL STRUCTURE OF THE N-DOMAIN OF HMA6, A COPPER-TRANSPORTING P- TITLE 2 TYPE ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN HEAVY METAL ATPASE 6,PROTEIN GLUCOSE INSENSITIVE COMPND 5 ROOT 1; COMPND 6 EC: 3.6.3.54; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PAA1, GIR1, HMA6, AT4G33520, F17M5.280, T16L1.10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P-TYPE ATPASE, COPPER TRANSPORTER, CHLOROPLAST, INNER MEMBRANE, KEYWDS 2 HYDROLASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.MAYERHOFER,S.RAVAUD,E.PEBAY-PEYROULA REVDAT 2 16-OCT-24 5LBD 1 REMARK REVDAT 1 02-AUG-17 5LBD 0 JRNL AUTH H.MAYERHOFER,E.SAUTRON,N.ROLLAND,P.CATTY,D.SEIGNEURIN-BERNY, JRNL AUTH 2 E.PEBAY-PEYROULA,S.RAVAUD JRNL TITL STRUCTURAL INSIGHTS INTO THE NUCLEOTIDE-BINDING DOMAINS OF JRNL TITL 2 THE P1B-TYPE ATPASES HMA6 AND HMA8 FROM ARABIDOPSIS JRNL TITL 3 THALIANA. JRNL REF PLOS ONE V. 11 65666 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27802305 JRNL DOI 10.1371/JOURNAL.PONE.0165666 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 34994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9626 - 3.4311 0.98 2944 146 0.1767 0.1774 REMARK 3 2 3.4311 - 2.7246 1.00 2828 171 0.1668 0.1971 REMARK 3 3 2.7246 - 2.3806 0.97 2770 149 0.1648 0.1809 REMARK 3 4 2.3806 - 2.1631 0.99 2771 144 0.1539 0.2037 REMARK 3 5 2.1631 - 2.0081 0.99 2791 132 0.1592 0.2059 REMARK 3 6 2.0081 - 1.8898 0.98 2728 145 0.1767 0.2253 REMARK 3 7 1.8898 - 1.7952 0.99 2770 130 0.1967 0.2288 REMARK 3 8 1.7952 - 1.7170 0.99 2723 166 0.2185 0.2743 REMARK 3 9 1.7170 - 1.6510 0.98 2726 139 0.2477 0.2497 REMARK 3 10 1.6510 - 1.5940 0.98 2742 125 0.2698 0.2979 REMARK 3 11 1.5940 - 1.5442 0.99 2732 139 0.2941 0.3114 REMARK 3 12 1.5442 - 1.5000 0.99 2730 153 0.3252 0.3541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1802 REMARK 3 ANGLE : 0.922 2469 REMARK 3 CHIRALITY : 0.062 307 REMARK 3 PLANARITY : 0.007 317 REMARK 3 DIHEDRAL : 14.332 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 606 THROUGH 655 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2246 18.6679 89.8965 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1120 REMARK 3 T33: 0.1403 T12: 0.0093 REMARK 3 T13: 0.0182 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.8111 L22: 5.1380 REMARK 3 L33: 6.1275 L12: 0.2092 REMARK 3 L13: 0.8175 L23: 0.3820 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: 0.0928 S13: 0.0470 REMARK 3 S21: 0.0551 S22: 0.0703 S23: -0.1782 REMARK 3 S31: 0.0879 S32: 0.2183 S33: 0.0660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 656 THROUGH 670 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0292 27.6303 90.5629 REMARK 3 T TENSOR REMARK 3 T11: 0.4414 T22: 0.3366 REMARK 3 T33: 0.4245 T12: 0.0917 REMARK 3 T13: 0.0710 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 5.3523 L22: 0.0038 REMARK 3 L33: 4.7447 L12: 1.0997 REMARK 3 L13: -5.2913 L23: -1.3240 REMARK 3 S TENSOR REMARK 3 S11: 0.4774 S12: 0.8721 S13: 0.8171 REMARK 3 S21: 0.0759 S22: 0.3654 S23: 0.4247 REMARK 3 S31: -0.8401 S32: -0.9220 S33: -0.7408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 671 THROUGH 703 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9085 13.5390 99.3574 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1165 REMARK 3 T33: 0.0941 T12: 0.0058 REMARK 3 T13: 0.0150 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 6.3129 L22: 6.3152 REMARK 3 L33: 5.6647 L12: -1.1242 REMARK 3 L13: -0.5870 L23: -1.3822 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0229 S13: -0.0375 REMARK 3 S21: 0.0067 S22: 0.0164 S23: 0.0749 REMARK 3 S31: 0.0424 S32: -0.2392 S33: 0.0175 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 704 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1008 8.1397 91.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1148 REMARK 3 T33: 0.1958 T12: 0.0185 REMARK 3 T13: -0.0016 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.3814 L22: 5.8774 REMARK 3 L33: 5.2654 L12: 1.7835 REMARK 3 L13: 0.8548 L23: 0.1533 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.1374 S13: -0.5688 REMARK 3 S21: -0.1886 S22: -0.0304 S23: -0.5487 REMARK 3 S31: 0.4463 S32: 0.2066 S33: 0.0348 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 606 THROUGH 642 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2338 14.0143 118.8499 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.2281 REMARK 3 T33: 0.1560 T12: -0.0046 REMARK 3 T13: -0.0531 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.4614 L22: 3.5999 REMARK 3 L33: 3.8689 L12: -0.4503 REMARK 3 L13: -0.7798 L23: -0.0842 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.1140 S13: 0.0786 REMARK 3 S21: 0.2158 S22: -0.0292 S23: -0.0869 REMARK 3 S31: -0.3713 S32: -0.2774 S33: 0.1909 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 643 THROUGH 670 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2322 12.2734 112.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1903 REMARK 3 T33: 0.1983 T12: -0.0555 REMARK 3 T13: -0.0015 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 3.8010 L22: 1.1892 REMARK 3 L33: 8.0215 L12: 0.1766 REMARK 3 L13: 0.7077 L23: 2.4562 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.1606 S13: -0.0386 REMARK 3 S21: 0.1989 S22: 0.0443 S23: -0.1178 REMARK 3 S31: 0.0323 S32: 0.2865 S33: -0.1603 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 671 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0894 10.8036 108.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.2017 REMARK 3 T33: 0.1717 T12: -0.0175 REMARK 3 T13: -0.0363 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 4.0177 L22: 4.6555 REMARK 3 L33: 4.5159 L12: -2.0224 REMARK 3 L13: -0.4257 L23: -0.1259 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: 0.0709 S13: -0.0752 REMARK 3 S21: 0.0183 S22: 0.1372 S23: 0.3427 REMARK 3 S31: -0.0673 S32: -0.6265 S33: -0.0027 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 726 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7957 18.3476 118.0117 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.3455 REMARK 3 T33: 0.2807 T12: 0.0726 REMARK 3 T13: -0.0479 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 5.8891 L22: 6.8472 REMARK 3 L33: 5.5011 L12: 6.0432 REMARK 3 L13: 0.7637 L23: 1.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.3714 S12: -0.5302 S13: 0.3720 REMARK 3 S21: 0.0620 S22: 0.2122 S23: 0.1356 REMARK 3 S31: -0.8882 S32: -0.4431 S33: 0.3188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 1.10100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: WEDGE SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.4, 0.6 M SODIUM FORMATE AFTER 4 H THE WELLS WERE REOPENED AND REMARK 280 MICROSEEDS WERE ADDED, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.59550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.79500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.59550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 604 REMARK 465 ALA A 605 REMARK 465 GLU A 617 REMARK 465 ASN A 618 REMARK 465 PRO A 619 REMARK 465 ARG A 620 REMARK 465 HIS A 621 REMARK 465 ASN A 622 REMARK 465 LEU A 623 REMARK 465 ASN A 624 REMARK 465 ASP A 625 REMARK 465 GLU A 712 REMARK 465 ILE A 713 REMARK 465 ASN A 714 REMARK 465 ASN A 715 REMARK 465 GLN A 716 REMARK 465 GLY B 604 REMARK 465 ALA B 605 REMARK 465 ASN B 618 REMARK 465 PRO B 619 REMARK 465 ARG B 620 REMARK 465 HIS B 621 REMARK 465 ASN B 622 REMARK 465 LEU B 623 REMARK 465 ASN B 624 REMARK 465 ASP B 625 REMARK 465 SER B 704 REMARK 465 LEU B 705 REMARK 465 LEU B 706 REMARK 465 ALA B 707 REMARK 465 LEU B 708 REMARK 465 ALA B 709 REMARK 465 ALA B 710 REMARK 465 HIS B 711 REMARK 465 GLU B 712 REMARK 465 ILE B 713 REMARK 465 ASN B 714 REMARK 465 ASN B 715 REMARK 465 GLN B 716 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 653 O HOH A 905 1.55 REMARK 500 O HOH A 956 O HOH A 969 2.12 REMARK 500 OE2 GLU B 629 O HOH B 901 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG CYS A 660 HG CYS B 660 4454 1.12 REMARK 500 OE1 GLN A 661 HZ1 LYS A 664 2567 1.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 724 -120.93 52.02 REMARK 500 THR B 611 -109.09 -111.79 REMARK 500 SER B 676 -61.57 -121.27 REMARK 500 ASP B 724 -122.59 51.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 B 806 DBREF 5LBD A 607 734 UNP Q9SZC9 HMA6_ARATH 607 734 DBREF 5LBD B 607 734 UNP Q9SZC9 HMA6_ARATH 607 734 SEQADV 5LBD GLY A 604 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD ALA A 605 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD SER A 606 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD ALA A 709 UNP Q9SZC9 GLU 709 ENGINEERED MUTATION SEQADV 5LBD ALA A 710 UNP Q9SZC9 GLU 710 ENGINEERED MUTATION SEQADV 5LBD GLY B 604 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD ALA B 605 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD SER B 606 UNP Q9SZC9 EXPRESSION TAG SEQADV 5LBD ALA B 709 UNP Q9SZC9 GLU 709 ENGINEERED MUTATION SEQADV 5LBD ALA B 710 UNP Q9SZC9 GLU 710 ENGINEERED MUTATION SEQRES 1 A 131 GLY ALA SER HIS PRO VAL VAL THR GLU VAL ILE ILE PRO SEQRES 2 A 131 GLU ASN PRO ARG HIS ASN LEU ASN ASP THR TRP SER GLU SEQRES 3 A 131 VAL GLU VAL LEU MSE LEU ALA ALA ALA VAL GLU SER ASN SEQRES 4 A 131 THR THR HIS PRO VAL GLY LYS ALA ILE VAL LYS ALA ALA SEQRES 5 A 131 ARG ALA ARG ASN CYS GLN THR MSE LYS ALA GLU ASP GLY SEQRES 6 A 131 THR PHE THR GLU GLU PRO GLY SER GLY ALA VAL ALA ILE SEQRES 7 A 131 VAL ASN ASN LYS ARG VAL THR VAL GLY THR LEU GLU TRP SEQRES 8 A 131 VAL LYS ARG HIS GLY ALA THR GLY ASN SER LEU LEU ALA SEQRES 9 A 131 LEU ALA ALA HIS GLU ILE ASN ASN GLN SER VAL VAL TYR SEQRES 10 A 131 ILE GLY VAL ASP ASN THR LEU ALA ALA VAL ILE ARG PHE SEQRES 11 A 131 GLU SEQRES 1 B 131 GLY ALA SER HIS PRO VAL VAL THR GLU VAL ILE ILE PRO SEQRES 2 B 131 GLU ASN PRO ARG HIS ASN LEU ASN ASP THR TRP SER GLU SEQRES 3 B 131 VAL GLU VAL LEU MSE LEU ALA ALA ALA VAL GLU SER ASN SEQRES 4 B 131 THR THR HIS PRO VAL GLY LYS ALA ILE VAL LYS ALA ALA SEQRES 5 B 131 ARG ALA ARG ASN CYS GLN THR MSE LYS ALA GLU ASP GLY SEQRES 6 B 131 THR PHE THR GLU GLU PRO GLY SER GLY ALA VAL ALA ILE SEQRES 7 B 131 VAL ASN ASN LYS ARG VAL THR VAL GLY THR LEU GLU TRP SEQRES 8 B 131 VAL LYS ARG HIS GLY ALA THR GLY ASN SER LEU LEU ALA SEQRES 9 B 131 LEU ALA ALA HIS GLU ILE ASN ASN GLN SER VAL VAL TYR SEQRES 10 B 131 ILE GLY VAL ASP ASN THR LEU ALA ALA VAL ILE ARG PHE SEQRES 11 B 131 GLU MODRES 5LBD MSE A 634 MET MODIFIED RESIDUE MODRES 5LBD MSE A 663 MET MODIFIED RESIDUE MODRES 5LBD MSE B 634 MET MODIFIED RESIDUE MODRES 5LBD MSE B 663 MET MODIFIED RESIDUE HET MSE A 634 17 HET MSE A 663 34 HET MSE B 634 17 HET MSE B 663 34 HET IOD A 801 1 HET IOD A 802 1 HET IOD A 803 1 HET IOD A 804 1 HET NH4 A 805 1 HET IOD B 801 1 HET CL B 802 1 HET EDO B 803 10 HET CL B 804 1 HET EDO B 805 10 HET NH4 B 806 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM NH4 AMMONIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 IOD 5(I 1-) FORMUL 7 NH4 2(H4 N 1+) FORMUL 9 CL 2(CL 1-) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 14 HOH *149(H2 O) HELIX 1 AA1 SER A 628 SER A 641 1 14 HELIX 2 AA2 HIS A 645 ARG A 656 1 12 HELIX 3 AA3 THR A 691 HIS A 698 1 8 HELIX 4 AA4 ASN A 703 HIS A 711 1 9 HELIX 5 AA5 SER B 628 SER B 641 1 14 HELIX 6 AA6 HIS B 645 ARG B 656 1 12 HELIX 7 AA7 THR B 691 HIS B 698 1 8 SHEET 1 AA1 6 VAL A 609 ILE A 614 0 SHEET 2 AA1 6 THR A 726 GLU A 734 -1 O ARG A 732 N THR A 611 SHEET 3 AA1 6 VAL A 718 VAL A 723 -1 N VAL A 719 O ILE A 731 SHEET 4 AA1 6 LYS A 685 GLY A 690 -1 N GLY A 690 O TYR A 720 SHEET 5 AA1 6 GLY A 677 VAL A 682 -1 N VAL A 682 O LYS A 685 SHEET 6 AA1 6 THR A 671 GLU A 673 -1 N GLU A 673 O GLY A 677 SHEET 1 AA2 6 VAL B 609 ILE B 614 0 SHEET 2 AA2 6 THR B 726 GLU B 734 -1 O ARG B 732 N GLU B 612 SHEET 3 AA2 6 VAL B 718 VAL B 723 -1 N VAL B 719 O ILE B 731 SHEET 4 AA2 6 LYS B 685 GLY B 690 -1 N GLY B 690 O TYR B 720 SHEET 5 AA2 6 GLY B 677 VAL B 682 -1 N VAL B 682 O LYS B 685 SHEET 6 AA2 6 THR B 671 GLU B 673 -1 N GLU B 673 O GLY B 677 SSBOND 1 CYS A 660 CYS B 660 1555 4454 2.04 LINK C LEU A 633 N MSE A 634 1555 1555 1.32 LINK C MSE A 634 N LEU A 635 1555 1555 1.33 LINK C THR A 662 N AMSE A 663 1555 1555 1.33 LINK C THR A 662 N BMSE A 663 1555 1555 1.33 LINK C AMSE A 663 N LYS A 664 1555 1555 1.33 LINK C BMSE A 663 N LYS A 664 1555 1555 1.33 LINK C LEU B 633 N MSE B 634 1555 1555 1.33 LINK C MSE B 634 N LEU B 635 1555 1555 1.33 LINK C THR B 662 N AMSE B 663 1555 1555 1.32 LINK C THR B 662 N BMSE B 663 1555 1555 1.33 LINK C AMSE B 663 N LYS B 664 1555 1555 1.33 LINK C BMSE B 663 N LYS B 664 1555 1555 1.33 SITE 1 AC1 2 LYS A 685 NH4 A 805 SITE 1 AC2 2 ASN A 703 LEU A 705 SITE 1 AC3 2 LYS A 696 ASN A 703 SITE 1 AC4 4 TRP A 627 MSE A 663 IOD A 801 ARG B 658 SITE 1 AC5 2 TRP B 627 HOH B 955 SITE 1 AC6 1 NH4 B 806 SITE 1 AC7 6 SER A 628 GLU A 629 VAL B 609 LYS B 653 SITE 2 AC7 6 ALA B 654 HOH B 930 SITE 1 AC8 1 SER B 676 SITE 1 AC9 4 ASN A 642 LYS B 685 HOH B 914 HOH B 958 SITE 1 AD1 4 THR B 691 LEU B 692 TYR B 720 CL B 802 CRYST1 38.800 65.191 85.590 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011684 0.00000