HEADER HYDROLASE 16-JUN-16 5LBK TITLE CRYSTAL STRUCTURE OF THE N-DOMAIN OF HMA8, A COPPER-TRANSPORTING P- TITLE 2 TYPE ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE PAA2, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 557-689; COMPND 5 SYNONYM: PROTEIN HEAVY METAL ATPASE 8; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PAA2, HMA8, AT5G21930, F13M11, T6G21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P-TYPE ATPASE, COPPER TRANSPORTER, CHLOROPLAST, THYLAKOID MEMBRANE, KEYWDS 2 MEMBRANE PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MAYERHOFER,E.PEBAY-PEYROULA,S.RAVAUD REVDAT 2 08-MAY-24 5LBK 1 REMARK REVDAT 1 02-AUG-17 5LBK 0 JRNL AUTH H.MAYERHOFER,E.SAUTRON,N.ROLLAND,P.CATTY,D.SEIGNEURIN-BERNY, JRNL AUTH 2 E.PEBAY-PEYROULA,S.RAVAUD JRNL TITL STRUCTURAL INSIGHTS INTO THE NUCLEOTIDE-BINDING DOMAINS OF JRNL TITL 2 THE P1B-TYPE ATPASES HMA6 AND HMA8 FROM ARABIDOPSIS JRNL TITL 3 THALIANA. JRNL REF PLOS ONE V. 11 65666 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27802305 JRNL DOI 10.1371/JOURNAL.PONE.0165666 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 23419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0381 - 3.4991 0.91 2772 146 0.1759 0.2209 REMARK 3 2 3.4991 - 2.7777 0.97 2797 139 0.2058 0.2418 REMARK 3 3 2.7777 - 2.4267 0.97 2772 143 0.2013 0.2289 REMARK 3 4 2.4267 - 2.2048 0.98 2794 138 0.1979 0.2556 REMARK 3 5 2.2048 - 2.0468 0.98 2783 143 0.2020 0.2403 REMARK 3 6 2.0468 - 1.9261 0.99 2777 157 0.2143 0.2307 REMARK 3 7 1.9261 - 1.8297 0.99 2774 144 0.2542 0.2666 REMARK 3 8 1.8297 - 1.7500 0.99 2790 150 0.2894 0.3471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1810 REMARK 3 ANGLE : 1.103 2446 REMARK 3 CHIRALITY : 0.071 294 REMARK 3 PLANARITY : 0.008 311 REMARK 3 DIHEDRAL : 14.606 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 558 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9961 22.4210 16.3685 REMARK 3 T TENSOR REMARK 3 T11: 0.3721 T22: 0.3238 REMARK 3 T33: 0.2634 T12: -0.0190 REMARK 3 T13: 0.0347 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 9.6994 L22: 6.7583 REMARK 3 L33: 6.2925 L12: -0.1612 REMARK 3 L13: 0.3263 L23: -1.1426 REMARK 3 S TENSOR REMARK 3 S11: -0.3718 S12: -0.0774 S13: 1.0657 REMARK 3 S21: 0.5175 S22: 0.2150 S23: -0.4187 REMARK 3 S31: -0.5474 S32: 0.4090 S33: 0.0736 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 570 THROUGH 580 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6512 25.5548 11.9223 REMARK 3 T TENSOR REMARK 3 T11: 0.5657 T22: 0.4210 REMARK 3 T33: 0.3767 T12: -0.1676 REMARK 3 T13: 0.0555 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 6.2678 L22: 2.6345 REMARK 3 L33: 1.1946 L12: 0.4556 REMARK 3 L13: -2.3053 L23: -0.7456 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.7415 S13: 0.1713 REMARK 3 S21: -0.0390 S22: 0.2065 S23: -0.5318 REMARK 3 S31: -1.7307 S32: 0.8313 S33: -0.1790 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 581 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6448 29.0723 0.0418 REMARK 3 T TENSOR REMARK 3 T11: 1.0384 T22: 0.7074 REMARK 3 T33: 0.6442 T12: 0.0480 REMARK 3 T13: 0.0762 T23: 0.1437 REMARK 3 L TENSOR REMARK 3 L11: 8.9652 L22: 7.0003 REMARK 3 L33: 1.7689 L12: 7.0705 REMARK 3 L13: -3.0043 L23: -2.9849 REMARK 3 S TENSOR REMARK 3 S11: -0.2791 S12: 2.3325 S13: 2.4260 REMARK 3 S21: -0.7141 S22: 1.1655 S23: 0.8063 REMARK 3 S31: -2.3603 S32: -0.1615 S33: -0.4287 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0815 31.6921 8.1934 REMARK 3 T TENSOR REMARK 3 T11: 1.1487 T22: 0.3361 REMARK 3 T33: 0.6053 T12: 0.1523 REMARK 3 T13: 0.1606 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 4.7810 L22: 3.6371 REMARK 3 L33: 1.5116 L12: 2.6563 REMARK 3 L13: -2.0231 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.7329 S12: 0.4873 S13: 1.5866 REMARK 3 S21: -0.8571 S22: -0.5857 S23: 1.0056 REMARK 3 S31: -1.4395 S32: -0.5544 S33: 0.6323 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 599 THROUGH 608 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1788 31.3924 6.6864 REMARK 3 T TENSOR REMARK 3 T11: 1.2869 T22: 0.5410 REMARK 3 T33: 0.6221 T12: -0.3634 REMARK 3 T13: 0.1671 T23: -0.1419 REMARK 3 L TENSOR REMARK 3 L11: 6.1464 L22: 2.1465 REMARK 3 L33: 2.4511 L12: -1.0400 REMARK 3 L13: 1.7852 L23: 1.6707 REMARK 3 S TENSOR REMARK 3 S11: 0.2874 S12: 0.2223 S13: 1.6789 REMARK 3 S21: 0.6761 S22: 1.0899 S23: -1.0077 REMARK 3 S31: -1.0750 S32: 1.7319 S33: -1.0701 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 609 THROUGH 615 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6650 19.0639 -4.5684 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.3718 REMARK 3 T33: 0.2821 T12: -0.0381 REMARK 3 T13: 0.0186 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.6189 L22: 2.3524 REMARK 3 L33: 9.6667 L12: 2.5253 REMARK 3 L13: -4.0814 L23: -4.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.4635 S12: 0.3915 S13: 0.3728 REMARK 3 S21: -0.7335 S22: 0.6235 S23: 0.7564 REMARK 3 S31: 0.0627 S32: -1.1283 S33: 0.0228 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 616 THROUGH 623 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8056 21.0889 1.8896 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.3850 REMARK 3 T33: 0.2137 T12: -0.0631 REMARK 3 T13: 0.0267 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.2595 L22: 7.6566 REMARK 3 L33: 8.2110 L12: -1.0687 REMARK 3 L13: 2.3521 L23: -0.8010 REMARK 3 S TENSOR REMARK 3 S11: 0.4560 S12: 0.9037 S13: 0.7679 REMARK 3 S21: 0.2742 S22: -0.0634 S23: -0.6305 REMARK 3 S31: -0.2367 S32: 1.3324 S33: -0.3398 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 624 THROUGH 637 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1071 13.7127 2.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.2623 REMARK 3 T33: 0.1724 T12: 0.0140 REMARK 3 T13: 0.0325 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 4.0524 L22: 7.9171 REMARK 3 L33: 5.8286 L12: 0.9283 REMARK 3 L13: -2.4600 L23: 0.0229 REMARK 3 S TENSOR REMARK 3 S11: 0.1601 S12: 0.4081 S13: -0.4687 REMARK 3 S21: 0.1398 S22: -0.0830 S23: -0.1259 REMARK 3 S31: 0.2165 S32: 0.3243 S33: 0.0776 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 638 THROUGH 643 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0314 6.7777 8.7412 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.4558 REMARK 3 T33: 0.4138 T12: 0.0589 REMARK 3 T13: -0.0001 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 5.8007 L22: 2.7448 REMARK 3 L33: 8.9893 L12: 1.7641 REMARK 3 L13: -6.9159 L23: -1.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -0.0956 S13: -0.5203 REMARK 3 S21: 0.4471 S22: -0.2213 S23: -0.3093 REMARK 3 S31: 0.1883 S32: 1.5113 S33: 0.4200 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 644 THROUGH 654 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3028 9.6827 18.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 0.3328 REMARK 3 T33: 0.3554 T12: -0.0468 REMARK 3 T13: 0.0976 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 9.7945 L22: 9.2664 REMARK 3 L33: 5.7611 L12: -4.6602 REMARK 3 L13: -1.8995 L23: 0.7526 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.1750 S13: -0.0696 REMARK 3 S21: -0.4544 S22: 0.4350 S23: -0.1185 REMARK 3 S31: 0.0258 S32: -0.3301 S33: -0.3822 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 655 THROUGH 676 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5739 17.3339 11.9681 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.3169 REMARK 3 T33: 0.2184 T12: -0.0483 REMARK 3 T13: 0.0425 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.4814 L22: 5.4224 REMARK 3 L33: 6.1703 L12: -0.8095 REMARK 3 L13: 0.3742 L23: 1.1282 REMARK 3 S TENSOR REMARK 3 S11: 0.3760 S12: -0.6654 S13: -0.9555 REMARK 3 S21: 0.4165 S22: -0.3022 S23: 0.6221 REMARK 3 S31: -0.0094 S32: -0.2819 S33: -0.1176 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 677 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8494 17.2557 10.9443 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.1502 REMARK 3 T33: 0.0756 T12: 0.0093 REMARK 3 T13: -0.0123 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 6.5025 L22: 7.6658 REMARK 3 L33: 6.7492 L12: -1.3734 REMARK 3 L13: -2.1175 L23: 0.5943 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: 0.1272 S13: -0.1251 REMARK 3 S21: -0.3528 S22: -0.2865 S23: 0.0409 REMARK 3 S31: -0.2052 S32: 0.1608 S33: 0.1253 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 558 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8501 24.9445 43.2596 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.2609 REMARK 3 T33: 0.2033 T12: 0.0362 REMARK 3 T13: -0.0327 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.1345 L22: 3.1945 REMARK 3 L33: 5.0993 L12: 2.6395 REMARK 3 L13: -1.6015 L23: 1.7459 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.5030 S13: -0.0707 REMARK 3 S21: 0.0378 S22: 0.1249 S23: -0.1539 REMARK 3 S31: 0.7510 S32: 1.1974 S33: -0.3550 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 570 THROUGH 583 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1323 19.4534 36.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.3755 REMARK 3 T33: 0.3359 T12: 0.1583 REMARK 3 T13: 0.0106 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 6.7716 L22: 8.0019 REMARK 3 L33: 0.1751 L12: 1.3625 REMARK 3 L13: 0.9548 L23: 0.5964 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: -0.3745 S13: -0.2746 REMARK 3 S21: 0.1158 S22: 0.0320 S23: -0.6887 REMARK 3 S31: 1.1899 S32: 0.9352 S33: 0.2606 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 584 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9410 26.5772 33.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.8464 REMARK 3 T33: 0.3799 T12: -0.0257 REMARK 3 T13: 0.0358 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 2.6581 L22: 9.2569 REMARK 3 L33: 2.1949 L12: 1.3874 REMARK 3 L13: -0.0554 L23: 4.2820 REMARK 3 S TENSOR REMARK 3 S11: -0.5146 S12: 0.2014 S13: 0.0727 REMARK 3 S21: -1.0804 S22: 0.7355 S23: -1.6011 REMARK 3 S31: -0.5768 S32: 1.1045 S33: 2.0996 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 599 THROUGH 608 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7586 14.2200 34.1049 REMARK 3 T TENSOR REMARK 3 T11: 0.5906 T22: 0.8448 REMARK 3 T33: 0.5269 T12: 0.4513 REMARK 3 T13: -0.3103 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 3.1580 L22: 3.2999 REMARK 3 L33: 5.1588 L12: 2.6981 REMARK 3 L13: 2.2533 L23: -0.0977 REMARK 3 S TENSOR REMARK 3 S11: 0.2024 S12: -1.2730 S13: -0.7986 REMARK 3 S21: 0.5280 S22: -0.2385 S23: -1.4171 REMARK 3 S31: 1.6655 S32: 0.7976 S33: -1.9436 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 609 THROUGH 615 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7246 25.5401 22.4196 REMARK 3 T TENSOR REMARK 3 T11: 0.5439 T22: 0.2714 REMARK 3 T33: 0.2729 T12: 0.0947 REMARK 3 T13: 0.1261 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 0.3484 L22: 7.2669 REMARK 3 L33: 3.7483 L12: -1.5945 REMARK 3 L13: -1.0942 L23: 4.9036 REMARK 3 S TENSOR REMARK 3 S11: 0.4862 S12: 0.0651 S13: 0.3880 REMARK 3 S21: -2.0974 S22: 0.0261 S23: -0.5483 REMARK 3 S31: -1.0210 S32: 0.3921 S33: -0.0448 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 616 THROUGH 623 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5994 15.1102 29.1432 REMARK 3 T TENSOR REMARK 3 T11: 0.3473 T22: 0.1424 REMARK 3 T33: 0.3015 T12: 0.0613 REMARK 3 T13: 0.0639 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.7288 L22: 4.8934 REMARK 3 L33: 4.2611 L12: 0.9057 REMARK 3 L13: -0.1321 L23: -4.3716 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0877 S13: -0.5015 REMARK 3 S21: -0.0589 S22: -0.1167 S23: -0.2881 REMARK 3 S31: 0.6167 S32: 0.1146 S33: -0.1054 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 624 THROUGH 643 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6575 21.7289 31.7129 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.2741 REMARK 3 T33: 0.2089 T12: -0.0640 REMARK 3 T13: 0.0118 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 5.6828 L22: 5.8610 REMARK 3 L33: 4.0888 L12: 0.2685 REMARK 3 L13: -1.5054 L23: 0.3939 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: 0.1027 S13: -0.1324 REMARK 3 S21: -0.0857 S22: -0.1109 S23: 0.4539 REMARK 3 S31: 0.6468 S32: -0.4942 S33: 0.1920 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 644 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6622 28.3143 44.9122 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.3379 REMARK 3 T33: 0.3463 T12: 0.1048 REMARK 3 T13: 0.0905 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 3.3457 L22: 9.9081 REMARK 3 L33: 3.0969 L12: 2.4610 REMARK 3 L13: 2.6342 L23: 3.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.0959 S13: -0.0448 REMARK 3 S21: -0.1510 S22: -0.3019 S23: 0.6618 REMARK 3 S31: 0.2598 S32: 0.0047 S33: 0.2303 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 654 THROUGH 676 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2556 29.2421 38.1407 REMARK 3 T TENSOR REMARK 3 T11: 0.3130 T22: 0.1747 REMARK 3 T33: 0.1762 T12: -0.0198 REMARK 3 T13: 0.0287 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 6.1107 L22: 6.2730 REMARK 3 L33: 6.1491 L12: 0.9148 REMARK 3 L13: 0.9331 L23: 3.8434 REMARK 3 S TENSOR REMARK 3 S11: -0.1274 S12: -0.0318 S13: 0.4612 REMARK 3 S21: 0.1369 S22: 0.0064 S23: 0.2563 REMARK 3 S31: -0.3173 S32: 0.1144 S33: -0.1088 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 677 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3294 23.5166 37.8128 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.1817 REMARK 3 T33: 0.1798 T12: 0.0020 REMARK 3 T13: 0.0667 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 5.0402 L22: 6.1745 REMARK 3 L33: 7.2516 L12: 3.0302 REMARK 3 L13: 1.6217 L23: 2.5388 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: 0.1376 S13: -0.0412 REMARK 3 S21: 0.3439 S22: 0.0886 S23: 0.2163 REMARK 3 S31: 0.1139 S32: 0.1326 S33: 0.0156 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.4, 0.6 M SODIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.08500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 554 REMARK 465 ALA A 555 REMARK 465 SER A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 657 REMARK 465 LEU A 658 REMARK 465 SER A 659 REMARK 465 ASN A 660 REMARK 465 THR A 661 REMARK 465 SER A 662 REMARK 465 SER A 663 REMARK 465 THR A 664 REMARK 465 SER A 665 REMARK 465 ARG A 666 REMARK 465 TYR A 667 REMARK 465 SER A 668 REMARK 465 ASP A 689 REMARK 465 GLY B 554 REMARK 465 ALA B 555 REMARK 465 SER B 556 REMARK 465 ARG B 557 REMARK 465 HIS B 656 REMARK 465 LYS B 657 REMARK 465 LEU B 658 REMARK 465 SER B 659 REMARK 465 ASN B 660 REMARK 465 THR B 661 REMARK 465 SER B 662 REMARK 465 SER B 663 REMARK 465 THR B 664 REMARK 465 SER B 665 REMARK 465 ARG B 666 REMARK 465 TYR B 667 REMARK 465 SER B 668 REMARK 465 ASP B 689 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 630 O HOH A 705 1.58 REMARK 500 O HOH A 717 O HOH A 740 1.77 REMARK 500 O HOH A 734 O HOH A 762 1.80 REMARK 500 O HOH B 702 O HOH B 709 1.90 REMARK 500 O HOH A 731 O HOH B 701 1.94 REMARK 500 OG1 THR B 611 O HOH B 701 2.08 REMARK 500 O HOH B 719 O HOH B 747 2.09 REMARK 500 O HOH A 712 O HOH A 753 2.15 REMARK 500 O HOH A 743 O HOH B 751 2.16 REMARK 500 O HOH B 722 O HOH B 760 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 713 O HOH B 722 3645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 566 -85.89 -103.32 REMARK 500 PHE A 615 -58.55 -122.07 REMARK 500 LEU B 599 0.44 -66.54 REMARK 500 PHE B 615 -52.31 -136.17 REMARK 500 ASP B 622 42.00 39.58 REMARK 500 GLU B 679 -31.17 -131.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 761 DISTANCE = 6.73 ANGSTROMS DBREF 5LBK A 557 689 UNP B9DFX7 HMA8_ARATH 557 689 DBREF 5LBK B 557 689 UNP B9DFX7 HMA8_ARATH 557 689 SEQADV 5LBK GLY A 554 UNP B9DFX7 EXPRESSION TAG SEQADV 5LBK ALA A 555 UNP B9DFX7 EXPRESSION TAG SEQADV 5LBK SER A 556 UNP B9DFX7 EXPRESSION TAG SEQADV 5LBK GLY B 554 UNP B9DFX7 EXPRESSION TAG SEQADV 5LBK ALA B 555 UNP B9DFX7 EXPRESSION TAG SEQADV 5LBK SER B 556 UNP B9DFX7 EXPRESSION TAG SEQRES 1 A 136 GLY ALA SER ARG PRO VAL VAL SER GLY VAL ALA SER LEU SEQRES 2 A 136 GLY TYR GLU GLU GLN GLU VAL LEU LYS MET ALA ALA ALA SEQRES 3 A 136 VAL GLU LYS THR ALA THR HIS PRO ILE ALA LYS ALA ILE SEQRES 4 A 136 VAL ASN GLU ALA GLU SER LEU ASN LEU LYS THR PRO GLU SEQRES 5 A 136 THR ARG GLY GLN LEU THR GLU PRO GLY PHE GLY THR LEU SEQRES 6 A 136 ALA GLU ILE ASP GLY ARG PHE VAL ALA VAL GLY SER LEU SEQRES 7 A 136 GLU TRP VAL SER ASP ARG PHE LEU LYS LYS ASN ASP SER SEQRES 8 A 136 SER ASP MET VAL LYS LEU GLU SER LEU LEU ASP HIS LYS SEQRES 9 A 136 LEU SER ASN THR SER SER THR SER ARG TYR SER LYS THR SEQRES 10 A 136 VAL VAL TYR VAL GLY ARG GLU GLY GLU GLY ILE ILE GLY SEQRES 11 A 136 ALA ILE ALA ILE SER ASP SEQRES 1 B 136 GLY ALA SER ARG PRO VAL VAL SER GLY VAL ALA SER LEU SEQRES 2 B 136 GLY TYR GLU GLU GLN GLU VAL LEU LYS MET ALA ALA ALA SEQRES 3 B 136 VAL GLU LYS THR ALA THR HIS PRO ILE ALA LYS ALA ILE SEQRES 4 B 136 VAL ASN GLU ALA GLU SER LEU ASN LEU LYS THR PRO GLU SEQRES 5 B 136 THR ARG GLY GLN LEU THR GLU PRO GLY PHE GLY THR LEU SEQRES 6 B 136 ALA GLU ILE ASP GLY ARG PHE VAL ALA VAL GLY SER LEU SEQRES 7 B 136 GLU TRP VAL SER ASP ARG PHE LEU LYS LYS ASN ASP SER SEQRES 8 B 136 SER ASP MET VAL LYS LEU GLU SER LEU LEU ASP HIS LYS SEQRES 9 B 136 LEU SER ASN THR SER SER THR SER ARG TYR SER LYS THR SEQRES 10 B 136 VAL VAL TYR VAL GLY ARG GLU GLY GLU GLY ILE ILE GLY SEQRES 11 B 136 ALA ILE ALA ILE SER ASP FORMUL 3 HOH *125(H2 O) HELIX 1 AA1 GLU A 569 GLU A 581 1 13 HELIX 2 AA2 HIS A 586 LEU A 599 1 14 HELIX 3 AA3 SER A 630 PHE A 638 1 9 HELIX 4 AA4 ASP A 643 HIS A 656 1 14 HELIX 5 AA5 GLU B 569 GLU B 581 1 13 HELIX 6 AA6 HIS B 586 LEU B 599 1 14 HELIX 7 AA7 SER B 630 PHE B 638 1 9 HELIX 8 AA8 ASP B 643 LEU B 654 1 12 SHEET 1 AA112 GLN A 609 GLU A 612 0 SHEET 2 AA112 GLY A 616 ILE A 621 -1 O GLY A 616 N GLU A 612 SHEET 3 AA112 ARG A 624 GLY A 629 -1 O ARG A 624 N ILE A 621 SHEET 4 AA112 THR A 670 ARG A 676 -1 O TYR A 673 N GLY A 629 SHEET 5 AA112 GLY A 680 SER A 688 -1 O ILE A 687 N THR A 670 SHEET 6 AA112 VAL A 559 SER A 565 -1 N SER A 561 O ALA A 686 SHEET 7 AA112 GLN B 609 GLU B 612 -1 O THR B 611 N VAL A 563 SHEET 8 AA112 GLY B 616 ILE B 621 -1 O LEU B 618 N LEU B 610 SHEET 9 AA112 ARG B 624 GLY B 629 -1 O ARG B 624 N ILE B 621 SHEET 10 AA112 THR B 670 ARG B 676 -1 O TYR B 673 N GLY B 629 SHEET 11 AA112 GLY B 680 SER B 688 -1 O ILE B 682 N VAL B 674 SHEET 12 AA112 VAL B 559 SER B 565 -1 N ALA B 564 O ALA B 684 CRYST1 44.170 48.280 108.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009237 0.00000