HEADER OXIDOREDUCTASE 17-JUN-16 5LBU TITLE STRUCTURE OF THE HUMAN QUINONE REDUCTASE 2 (NQO2) IN COMPLEX WITH TO TITLE 2 CL097 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2,NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2,QR2; COMPND 6 EC: 1.10.5.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS QUINONE REDUCTASE 2 RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE, KEYWDS 2 OXYDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,O.GROSS REVDAT 4 10-JAN-24 5LBU 1 REMARK REVDAT 3 06-SEP-17 5LBU 1 REMARK REVDAT 2 14-DEC-16 5LBU 1 JRNL REVDAT 1 27-JUL-16 5LBU 0 JRNL AUTH C.GROSS,R.MISHRA,K.SCHNEIDER,G.MEDARD,J.WETTMARSHAUSEN, JRNL AUTH 2 D.DITTLEIN,O.GORKA,P.-A.KOENIG,S.FROMM,G.MAGNANI,T.CIKOVIC, JRNL AUTH 3 L.HARTJES,J.SMOLLICH,A.ROBERTSON,M.COOPER, JRNL AUTH 4 M.SCHMIDT-SUPPRIAN,M.SCHUSTER,K.SCHRODER,P.BROZ, JRNL AUTH 5 C.TRAIDL-HOFFMANN,B.KUESTER,J.RULAND,S.SCHNEIDER,F.PEROCCHI, JRNL AUTH 6 O.GROSS JRNL TITL IMIQUIMOD INHIBITS MITOCHONDRIAL COMPLEX I AND INDUCES K+ JRNL TITL 2 EFFLUX-INDEPENDENT NLRP3 INFLAMMASOME ACTIVATION VIA NEK7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 56454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 205 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.45000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4000 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3660 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5466 ; 1.412 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8433 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;34.043 ;24.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;11.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.255 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4402 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1841 ; 1.314 ; 2.510 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1840 ; 1.300 ; 2.508 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2303 ; 2.139 ; 3.755 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2304 ; 2.140 ; 3.756 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2159 ; 1.613 ; 2.746 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2160 ; 1.612 ; 2.746 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3157 ; 2.647 ; 4.039 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5246 ; 4.734 ;22.423 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5247 ; 4.734 ;22.429 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2BZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL PH 8.5 2 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.84700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.00800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.42650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.00800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.84700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.42650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLN A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLN B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -127.78 47.65 REMARK 500 TYR A 155 51.35 -99.71 REMARK 500 TYR B 132 -119.19 49.88 REMARK 500 TYR B 155 49.58 -93.57 REMARK 500 THR B 175 -66.95 -109.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 103.8 REMARK 620 3 CYS A 222 O 105.6 99.5 REMARK 620 4 CYS A 222 SG 125.0 120.1 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 104.1 REMARK 620 3 CYS B 222 O 104.8 94.1 REMARK 620 4 CYS B 222 SG 125.3 122.5 99.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C09 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C09 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C09 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C09 B 307 DBREF 5LBU A 0 230 UNP P16083 NQO2_HUMAN 1 231 DBREF 5LBU B 0 230 UNP P16083 NQO2_HUMAN 1 231 SEQADV 5LBU HIS A 231 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS A 232 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS A 233 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS A 234 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS A 235 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS A 236 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 231 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 232 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 233 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 234 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 235 UNP P16083 EXPRESSION TAG SEQADV 5LBU HIS B 236 UNP P16083 EXPRESSION TAG SEQRES 1 A 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 A 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 A 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 A 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 A 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 A 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 A 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 A 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 A 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 A 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 A 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 A 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 A 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 A 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 A 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 A 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 A 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 A 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 B 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 B 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 B 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 B 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 B 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 B 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 B 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 B 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 B 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 B 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 B 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 B 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 B 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 B 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 B 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 B 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 B 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS HET ZN A 301 1 HET FAD A 302 53 HET SO4 A 303 5 HET SO4 A 304 5 HET C09 A 305 18 HET C09 A 306 36 HET FAD B 301 53 HET ZN B 302 1 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET C09 B 306 18 HET C09 B 307 18 HETNAM ZN ZINC ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM C09 2-(ETHOXYMETHYL)-1H-IMIDAZO[4,5-C]QUINOLIN-4-AMINE HETSYN C09 CL097 FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 SO4 5(O4 S 2-) FORMUL 7 C09 4(C13 H14 N4 O) FORMUL 16 HOH *261(H2 O) HELIX 1 AA1 SER A 16 GLY A 33 1 18 HELIX 2 AA2 THR A 51 ILE A 55 5 5 HELIX 3 AA3 ASN A 66 GLN A 77 1 12 HELIX 4 AA4 ALA A 81 ALA A 94 1 14 HELIX 5 AA5 PRO A 109 LEU A 120 1 12 HELIX 6 AA6 PHE A 131 GLY A 135 5 5 HELIX 7 AA7 THR A 151 TYR A 155 5 5 HELIX 8 AA8 ASP A 163 HIS A 173 1 11 HELIX 9 AA9 SER A 196 THR A 213 1 18 HELIX 10 AB1 ILE A 214 GLU A 217 5 4 HELIX 11 AB2 THR A 223 GLY A 229 1 7 HELIX 12 AB3 SER B 16 GLN B 32 1 17 HELIX 13 AB4 LEU B 41 ASN B 45 1 5 HELIX 14 AB5 THR B 51 ILE B 55 5 5 HELIX 15 AB6 ASN B 66 GLN B 77 1 12 HELIX 16 AB7 ALA B 81 ALA B 94 1 14 HELIX 17 AB8 PRO B 109 LEU B 120 1 12 HELIX 18 AB9 PHE B 131 GLY B 135 5 5 HELIX 19 AC1 ASP B 163 HIS B 173 1 11 HELIX 20 AC2 SER B 196 THR B 213 1 18 HELIX 21 AC3 ILE B 214 GLU B 217 5 4 HELIX 22 AC4 THR B 223 GLY B 229 1 7 SHEET 1 AA1 5 THR A 35 ASP A 40 0 SHEET 2 AA1 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA1 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA1 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 AA1 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 AA2 5 THR A 35 ASP A 40 0 SHEET 2 AA2 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA2 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA2 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 AA2 5 GLN A 187 SER A 189 1 O SER A 189 N VAL A 146 SHEET 1 AA3 5 THR B 35 ASP B 40 0 SHEET 2 AA3 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA3 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA3 5 LEU B 141 THR B 147 1 O SER B 145 N PHE B 99 SHEET 5 AA3 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 AA4 5 THR B 35 ASP B 40 0 SHEET 2 AA4 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA4 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA4 5 LEU B 141 THR B 147 1 O SER B 145 N PHE B 99 SHEET 5 AA4 5 GLN B 187 SER B 189 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 301 1555 1555 2.15 LINK ND1 HIS A 177 ZN ZN A 301 1555 1555 2.19 LINK O CYS A 222 ZN ZN A 301 1555 1555 2.17 LINK SG CYS A 222 ZN ZN A 301 1555 1555 2.22 LINK ND1 HIS B 173 ZN ZN B 302 1555 1555 2.18 LINK ND1 HIS B 177 ZN ZN B 302 1555 1555 2.25 LINK O CYS B 222 ZN ZN B 302 1555 1555 2.12 LINK SG CYS B 222 ZN ZN B 302 1555 1555 2.11 CISPEP 1 ILE A 128 PRO A 129 0 0.13 CISPEP 2 ILE B 128 PRO B 129 0 1.91 SITE 1 AC1 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC2 26 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC2 26 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC2 26 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC2 26 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC2 26 GLU A 193 ARG A 200 LYS A 201 C09 A 305 SITE 6 AC2 26 HOH A 460 HOH A 483 HOH A 487 ASN B 66 SITE 7 AC2 26 ASP B 117 HOH B 476 SITE 1 AC3 6 SER A 196 GLU A 198 PRO A 221 THR A 223 SITE 2 AC3 6 HIS A 225 TRP A 226 SITE 1 AC4 4 GLU A 47 ARG A 49 GLU B 47 ARG B 49 SITE 1 AC5 10 TRP A 105 GLY A 149 GLY A 150 MET A 154 SITE 2 AC5 10 ASN A 161 FAD A 302 HOH A 417 PHE B 126 SITE 3 AC5 10 PHE B 131 PHE B 178 SITE 1 AC6 10 GLY A 68 GLN A 122 PHE A 126 PHE A 178 SITE 2 AC6 10 HOH A 409 TRP B 105 GLY B 149 GLY B 150 SITE 3 AC6 10 ASN B 161 FAD B 301 SITE 1 AC7 26 ASN A 66 ASP A 117 C09 A 306 HOH A 442 SITE 2 AC7 26 HIS B 11 LYS B 15 SER B 16 PHE B 17 SITE 3 AC7 26 ASN B 18 SER B 20 PRO B 102 LEU B 103 SITE 4 AC7 26 TYR B 104 TRP B 105 PHE B 106 THR B 147 SITE 5 AC7 26 THR B 148 GLY B 149 GLY B 150 TYR B 155 SITE 6 AC7 26 GLU B 193 GLU B 197 ARG B 200 HOH B 421 SITE 7 AC7 26 HOH B 422 HOH B 495 SITE 1 AC8 3 HIS B 173 HIS B 177 CYS B 222 SITE 1 AC9 3 ALA B 81 SER B 82 HOH B 417 SITE 1 AD1 5 PRO A 14 ASN A 23 HOH A 448 ARG B 31 SITE 2 AD1 5 C09 B 306 SITE 1 AD2 6 ARG A 31 PRO B 14 ASN B 23 C09 B 307 SITE 2 AD2 6 HOH B 413 HOH B 499 SITE 1 AD3 10 PRO A 14 LYS A 15 LYS A 22 ASN A 23 SITE 2 AD3 10 VAL A 26 ASP A 27 ASP B 27 SO4 B 304 SITE 3 AD3 10 C09 B 307 HOH B 505 SITE 1 AD4 6 ASP A 27 LYS B 22 ASN B 23 ASP B 27 SITE 2 AD4 6 SO4 B 305 C09 B 306 CRYST1 57.694 80.853 106.016 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009433 0.00000