HEADER HYDROLASE 18-JUN-16 5LC0 TITLE CRYSTAL STRUCTURE OF ZIKA VIRUS NS2B-NS3 PROTEASE IN COMPLEX WITH A TITLE 2 BORONATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS2B-NS3 PROTEASE,NS2B-NS3 PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: BEH823339; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZIKA VIRUS NS2B-NS3 PROTEASE, ANTIVIRAL AGENTS, BORONIC-ACID KEYWDS 2 INHIBITOR, CYCLIC DIESTER WITH GLYCEROL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LEI,G.HANSEN,L.L.ZHANG,R.HILGENFELD REVDAT 5 10-JAN-24 5LC0 1 REMARK REVDAT 4 10-AUG-16 5LC0 1 JRNL REVDAT 3 20-JUL-16 5LC0 1 JRNL REVDAT 2 13-JUL-16 5LC0 1 JRNL REVDAT 1 06-JUL-16 5LC0 0 JRNL AUTH J.LEI,G.HANSEN,C.NITSCHE,C.D.KLEIN,L.ZHANG,R.HILGENFELD JRNL TITL CRYSTAL STRUCTURE OF ZIKA VIRUS NS2B-NS3 PROTEASE IN COMPLEX JRNL TITL 2 WITH A BORONATE INHIBITOR. JRNL REF SCIENCE V. 353 503 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27386922 JRNL DOI 10.1126/SCIENCE.AAG2419 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -50.14000 REMARK 3 B22 (A**2) : -50.14000 REMARK 3 B33 (A**2) : 100.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3030 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2841 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4104 ; 1.622 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6534 ; 1.134 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 8.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.534 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;19.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3445 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 685 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1528 ; 6.386 ; 9.234 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1527 ; 6.383 ; 9.235 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1903 ; 9.393 ;13.846 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1904 ; 9.392 ;13.845 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 6.088 ; 9.530 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1502 ; 6.086 ; 9.530 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2201 ; 9.029 ;14.138 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3433 ;12.882 ;74.126 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3434 ;12.881 ;74.131 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.435 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.565 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2YOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE, PH 4.8., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.97400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.48700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.48700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.97400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 GLU A 984 REMARK 465 ASP A 985 REMARK 465 ASP A 986 REMARK 465 GLY A 987 REMARK 465 PRO A 988 REMARK 465 PRO A 989 REMARK 465 MET A 990 REMARK 465 ALA A 991 REMARK 465 GLY A 992 REMARK 465 GLY A 993 REMARK 465 GLY A 994 REMARK 465 GLY A 995 REMARK 465 SER A 996 REMARK 465 GLY A 997 REMARK 465 GLY A 998 REMARK 465 GLY A 999 REMARK 465 GLY A 1000 REMARK 465 SER A 1001 REMARK 465 GLY A 1002 REMARK 465 ALA A 1003 REMARK 465 LEU A 1004 REMARK 465 TRP A 1005 REMARK 465 ASP A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 ALA A 1009 REMARK 465 PRO A 1010 REMARK 465 LYS A 1011 REMARK 465 GLU A 1012 REMARK 465 VAL A 1013 REMARK 465 LYS A 1014 REMARK 465 GLY A 1168 REMARK 465 ARG A 1169 REMARK 465 ARG A 1170 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 HIS B -2 REMARK 465 VAL B 983 REMARK 465 GLU B 984 REMARK 465 ASP B 985 REMARK 465 ASP B 986 REMARK 465 GLY B 987 REMARK 465 PRO B 988 REMARK 465 PRO B 989 REMARK 465 MET B 990 REMARK 465 ALA B 991 REMARK 465 GLY B 992 REMARK 465 GLY B 993 REMARK 465 GLY B 994 REMARK 465 GLY B 995 REMARK 465 SER B 996 REMARK 465 GLY B 997 REMARK 465 GLY B 998 REMARK 465 GLY B 999 REMARK 465 GLY B 1000 REMARK 465 SER B 1001 REMARK 465 GLY B 1002 REMARK 465 ALA B 1003 REMARK 465 LEU B 1004 REMARK 465 TRP B 1005 REMARK 465 ASP B 1006 REMARK 465 VAL B 1007 REMARK 465 PRO B 1008 REMARK 465 ALA B 1009 REMARK 465 PRO B 1010 REMARK 465 LYS B 1011 REMARK 465 GLU B 1012 REMARK 465 VAL B 1013 REMARK 465 LYS B 1014 REMARK 465 LYS B 1015 REMARK 465 GLY B 1016 REMARK 465 GLY B 1168 REMARK 465 ARG B 1169 REMARK 465 ARG B 1170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C MET A -1 OD1 ASN B 1158 2.14 REMARK 500 OG SER A 1135 O3 6T8 A 1201 2.15 REMARK 500 OG SER B 1135 O1 6T8 B 1201 2.16 REMARK 500 O LEU A 1098 OG SER A 1137 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1305 O HOH A 1305 6769 0.88 REMARK 500 O HOH A 1308 O HOH A 1308 6768 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 49 77.00 -177.77 REMARK 500 GLU A1043 50.94 30.98 REMARK 500 TYR A1068 -71.53 -100.51 REMARK 500 ASP A1071 95.63 -166.88 REMARK 500 ASP A1075 63.68 86.50 REMARK 500 CYS A1080 25.86 44.24 REMARK 500 HIS A1092 -5.14 -140.71 REMARK 500 VAL A1100 69.79 -115.24 REMARK 500 ASP A1120 36.93 -93.48 REMARK 500 THR B 68 145.67 -171.27 REMARK 500 ALA B 77 -175.15 -68.35 REMARK 500 LEU B 78 102.42 -162.57 REMARK 500 THR B1034 146.20 -172.04 REMARK 500 LYS B1054 60.25 35.75 REMARK 500 CYS B1080 -31.45 68.81 REMARK 500 HIS B1092 -59.57 -131.22 REMARK 500 LYS B1117 95.05 -64.81 REMARK 500 SER B1160 131.70 -34.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1310 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T8 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T8 B 1201 DBREF1 5LC0 A 49 991 UNP A0A140FB25_ZIKV DBREF2 5LC0 A A0A140FB25 1421 1467 DBREF1 5LC0 A 1001 1170 UNP A0A140DLX4_ZIKV DBREF2 5LC0 A A0A140DLX4 1503 1672 DBREF1 5LC0 B 49 991 UNP A0A140FB25_ZIKV DBREF2 5LC0 B A0A140FB25 1421 1467 DBREF1 5LC0 B 1001 1170 UNP A0A140DLX4_ZIKV DBREF2 5LC0 B A0A140DLX4 1503 1672 SEQADV 5LC0 GLY A -4 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 SER A -3 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 HIS A -2 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 MET A -1 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 ALA A 991 UNP A0A140FB2 ARG 1467 ENGINEERED MUTATION SEQADV 5LC0 GLY A 992 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 993 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 994 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 995 UNP A0A140FB2 LINKER SEQADV 5LC0 SER A 996 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 997 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 998 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 999 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 1000 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY A 1029 UNP A0A140DLX ARG 1531 ENGINEERED MUTATION SEQADV 5LC0 GLY B -4 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 SER B -3 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 HIS B -2 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 MET B -1 UNP A0A140FB2 EXPRESSION TAG SEQADV 5LC0 ALA B 991 UNP A0A140FB2 ARG 1467 ENGINEERED MUTATION SEQADV 5LC0 GLY B 992 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 993 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 994 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 995 UNP A0A140FB2 LINKER SEQADV 5LC0 SER B 996 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 997 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 998 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 999 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 1000 UNP A0A140FB2 LINKER SEQADV 5LC0 GLY B 1029 UNP A0A140DLX ARG 1531 ENGINEERED MUTATION SEQRES 1 A 230 GLY SER HIS MET VAL ASP MET TYR ILE GLU ARG ALA GLY SEQRES 2 A 230 ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SEQRES 3 A 230 SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY ASP SEQRES 4 A 230 PHE SER LEU VAL GLU ASP ASP GLY PRO PRO MET ALA GLY SEQRES 5 A 230 GLY GLY GLY SER GLY GLY GLY GLY SER GLY ALA LEU TRP SEQRES 6 A 230 ASP VAL PRO ALA PRO LYS GLU VAL LYS LYS GLY GLU THR SEQRES 7 A 230 THR ASP GLY VAL TYR ARG VAL MET THR ARG GLY LEU LEU SEQRES 8 A 230 GLY SER THR GLN VAL GLY VAL GLY VAL MET GLN GLU GLY SEQRES 9 A 230 VAL PHE HIS THR MET TRP HIS VAL THR LYS GLY SER ALA SEQRES 10 A 230 LEU ARG SER GLY GLU GLY ARG LEU ASP PRO TYR TRP GLY SEQRES 11 A 230 ASP VAL LYS GLN ASP LEU VAL SER TYR CYS GLY PRO TRP SEQRES 12 A 230 LYS LEU ASP ALA ALA TRP ASP GLY HIS SER GLU VAL GLN SEQRES 13 A 230 LEU LEU ALA VAL PRO PRO GLY GLU ARG ALA ARG ASN ILE SEQRES 14 A 230 GLN THR LEU PRO GLY ILE PHE LYS THR LYS ASP GLY ASP SEQRES 15 A 230 ILE GLY ALA VAL ALA LEU ASP TYR PRO ALA GLY THR SER SEQRES 16 A 230 GLY SER PRO ILE LEU ASP LYS CYS GLY ARG VAL ILE GLY SEQRES 17 A 230 LEU TYR GLY ASN GLY VAL VAL ILE LYS ASN GLY SER TYR SEQRES 18 A 230 VAL SER ALA ILE THR GLN GLY ARG ARG SEQRES 1 B 230 GLY SER HIS MET VAL ASP MET TYR ILE GLU ARG ALA GLY SEQRES 2 B 230 ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SEQRES 3 B 230 SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY ASP SEQRES 4 B 230 PHE SER LEU VAL GLU ASP ASP GLY PRO PRO MET ALA GLY SEQRES 5 B 230 GLY GLY GLY SER GLY GLY GLY GLY SER GLY ALA LEU TRP SEQRES 6 B 230 ASP VAL PRO ALA PRO LYS GLU VAL LYS LYS GLY GLU THR SEQRES 7 B 230 THR ASP GLY VAL TYR ARG VAL MET THR ARG GLY LEU LEU SEQRES 8 B 230 GLY SER THR GLN VAL GLY VAL GLY VAL MET GLN GLU GLY SEQRES 9 B 230 VAL PHE HIS THR MET TRP HIS VAL THR LYS GLY SER ALA SEQRES 10 B 230 LEU ARG SER GLY GLU GLY ARG LEU ASP PRO TYR TRP GLY SEQRES 11 B 230 ASP VAL LYS GLN ASP LEU VAL SER TYR CYS GLY PRO TRP SEQRES 12 B 230 LYS LEU ASP ALA ALA TRP ASP GLY HIS SER GLU VAL GLN SEQRES 13 B 230 LEU LEU ALA VAL PRO PRO GLY GLU ARG ALA ARG ASN ILE SEQRES 14 B 230 GLN THR LEU PRO GLY ILE PHE LYS THR LYS ASP GLY ASP SEQRES 15 B 230 ILE GLY ALA VAL ALA LEU ASP TYR PRO ALA GLY THR SER SEQRES 16 B 230 GLY SER PRO ILE LEU ASP LYS CYS GLY ARG VAL ILE GLY SEQRES 17 B 230 LEU TYR GLY ASN GLY VAL VAL ILE LYS ASN GLY SER TYR SEQRES 18 B 230 VAL SER ALA ILE THR GLN GLY ARG ARG HET 6T8 A1201 37 HET 6T8 B1201 37 HETNAM 6T8 N-((S)-3-(4-(AMINOMETHYL)PHENYL)-1-(((R)-4-GUANIDINO-1- HETNAM 2 6T8 (5-HYDROXY-1,3,2-DIOXABORINAN-2-YL)BUTYL)AMINO)-1- HETNAM 3 6T8 OXOPROPAN-2-YL)BENZAMIDE FORMUL 3 6T8 2(C25 H35 B N6 O5) FORMUL 5 HOH *15(H2 O) HELIX 1 AA1 TRP A 1050 LYS A 1054 1 5 HELIX 2 AA2 MET B 1049 LYS B 1054 1 6 SHEET 1 AA1 6 TYR A 52 GLY A 57 0 SHEET 2 AA1 6 GLY A1021 THR A1027 -1 O MET A1026 N TYR A 52 SHEET 3 AA1 6 THR A1034 GLN A1042 -1 O GLY A1037 N VAL A1025 SHEET 4 AA1 6 VAL A1045 MET A1049 -1 O VAL A1045 N GLN A1042 SHEET 5 AA1 6 LEU A1076 TYR A1079 -1 O TYR A1079 N PHE A1046 SHEET 6 AA1 6 PRO A1067 ASP A1071 -1 N TYR A1068 O SER A1078 SHEET 1 AA210 GLU A 66 VAL A 67 0 SHEET 2 AA210 ARG A1107 THR A1111 1 O GLN A1110 N GLU A 66 SHEET 3 AA210 VAL A1095 ALA A1099 -1 N LEU A1097 O ILE A1109 SHEET 4 AA210 PRO A1138 LEU A1140 -1 O LEU A1140 N GLN A1096 SHEET 5 AA210 VAL A1146 VAL A1155 -1 O GLY A1148 N ILE A1139 SHEET 6 AA210 TYR A1161 THR A1166 -1 O ALA A1164 N ASN A1152 SHEET 7 AA210 ILE A1123 VAL A1126 -1 N VAL A1126 O SER A1163 SHEET 8 AA210 GLY A1114 LYS A1117 -1 N GLY A1114 O ALA A1125 SHEET 9 AA210 LEU A 74 LEU A 78 1 N LEU A 74 O LYS A1117 SHEET 10 AA210 PHE A 84 LEU A 86 -1 O SER A 85 N ALA A 77 SHEET 1 AA3 2 LEU A1058 ARG A1059 0 SHEET 2 AA3 2 ARG A1064 LEU A1065 -1 O LEU A1065 N LEU A1058 SHEET 1 AA4 6 MET B 51 ARG B 55 0 SHEET 2 AA4 6 GLY B1021 GLY B1029 -1 O MET B1026 N TYR B 52 SHEET 3 AA4 6 GLY B1032 GLN B1042 -1 O MET B1041 N GLY B1021 SHEET 4 AA4 6 VAL B1045 THR B1048 -1 O HIS B1047 N VAL B1040 SHEET 5 AA4 6 LEU B1076 TYR B1079 -1 O VAL B1077 N THR B1048 SHEET 6 AA4 6 PRO B1067 ASP B1071 -1 N TYR B1068 O SER B1078 SHEET 1 AA5 5 ARG B 73 ASP B 75 0 SHEET 2 AA5 5 GLY B1114 LYS B1117 1 O ILE B1115 N LEU B 74 SHEET 3 AA5 5 ASP B1122 VAL B1126 -1 O ALA B1125 N GLY B1114 SHEET 4 AA5 5 TYR B1161 ALA B1164 -1 O SER B1163 N VAL B1126 SHEET 5 AA5 5 GLY B1153 VAL B1155 -1 N VAL B1154 O VAL B1162 SHEET 1 AA6 2 ALA B 77 LEU B 78 0 SHEET 2 AA6 2 PHE B 84 SER B 85 -1 O SER B 85 N ALA B 77 SHEET 1 AA7 4 ARG B1107 THR B1111 0 SHEET 2 AA7 4 VAL B1095 ALA B1099 -1 N ALA B1099 O ARG B1107 SHEET 3 AA7 4 PRO B1138 LEU B1140 -1 O LEU B1140 N GLN B1096 SHEET 4 AA7 4 VAL B1146 LEU B1149 -1 O GLY B1148 N ILE B1139 LINK OG SER A1135 B4 6T8 A1201 1555 1555 1.61 LINK OG SER B1135 B4 6T8 B1201 1555 1555 1.63 SITE 1 AC1 18 SER A 81 GLY A 82 ASP A 83 VAL A1036 SITE 2 AC1 18 HIS A1051 ASP A1129 TYR A1130 ALA A1132 SITE 3 AC1 18 GLY A1133 SER A1135 GLY A1151 ASN A1152 SITE 4 AC1 18 GLY A1153 VAL A1155 TYR A1161 VAL B1036 SITE 5 AC1 18 HIS B1051 LYS B1054 SITE 1 AC2 20 HIS A1051 LYS A1054 SER B 81 GLY B 82 SITE 2 AC2 20 ASP B 83 VAL B1036 HIS B1051 ASP B1075 SITE 3 AC2 20 ASP B1129 TYR B1130 ALA B1132 GLY B1133 SITE 4 AC2 20 SER B1135 GLY B1151 ASN B1152 GLY B1153 SITE 5 AC2 20 VAL B1154 VAL B1155 TYR B1161 HOH B1301 CRYST1 125.808 125.808 73.461 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007949 0.004589 0.000000 0.00000 SCALE2 0.000000 0.009178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013613 0.00000