HEADER HYDROLASE 21-JUN-16 5LCH TITLE VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH (S)-1-ALLYL-2-(3- TITLE 2 METHOXYPHENYL)-3-OXOISOINDOLINE-4-CARBOXYLIC ACID (COMPOUND 42) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-LACTAMASE,BETA-LACTAMASE VIM-2,CLASS B CARBAPENEMASE COMPND 5 VIM-2,METALLO BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO- COMPND 6 BETA-LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,VIM-2 METALLO-BETA- COMPND 7 LACTAMASE,VIM-2 PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: (S)-1-ALLYL-2-(3-METHOXYPHENYL)-3-OXOISOINDOLINE-4- COMPND 10 CARBOXYLIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: OPINF VECTOR BASED ON PTRIEX VECTOR KEYWDS METALLO-BETA-LACTAMASE, INHIBITOR, COMPLEX, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 10-JAN-24 5LCH 1 REMARK REVDAT 2 24-MAY-17 5LCH 1 JRNL REVDAT 1 15-FEB-17 5LCH 0 JRNL AUTH G.B.LI,M.I.ABBOUD,J.BREM,H.SOMEYA,C.T.LOHANS,S.Y.YANG, JRNL AUTH 2 J.SPENCER,D.W.WAREHAM,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL NMR-FILTERED VIRTUAL SCREENING LEADS TO NON-METAL CHELATING JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITORS. JRNL REF CHEM SCI V. 8 928 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 28451231 JRNL DOI 10.1039/C6SC04524C REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1666 - 4.3020 1.00 1345 145 0.1374 0.1714 REMARK 3 2 4.3020 - 3.4201 1.00 1306 146 0.1189 0.1470 REMARK 3 3 3.4201 - 2.9893 1.00 1331 144 0.1266 0.1429 REMARK 3 4 2.9893 - 2.7167 1.00 1287 147 0.1255 0.1673 REMARK 3 5 2.7167 - 2.5224 1.00 1288 141 0.1195 0.1637 REMARK 3 6 2.5224 - 2.3739 1.00 1304 145 0.1143 0.1646 REMARK 3 7 2.3739 - 2.2552 0.99 1296 147 0.1222 0.1510 REMARK 3 8 2.2552 - 2.1571 0.99 1298 144 0.1241 0.1540 REMARK 3 9 2.1571 - 2.0742 0.98 1254 141 0.1255 0.1781 REMARK 3 10 2.0742 - 2.0027 0.98 1288 145 0.1272 0.1687 REMARK 3 11 2.0027 - 1.9401 0.99 1287 138 0.1348 0.1974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1843 REMARK 3 ANGLE : 0.816 2521 REMARK 3 CHIRALITY : 0.053 283 REMARK 3 PLANARITY : 0.005 333 REMARK 3 DIHEDRAL : 11.123 1066 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5456 -59.5557 53.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1644 REMARK 3 T33: 0.1907 T12: 0.0573 REMARK 3 T13: 0.1195 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 1.9255 L22: 3.5627 REMARK 3 L33: 0.9167 L12: 1.5831 REMARK 3 L13: -0.2228 L23: -0.8482 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: 0.4044 S13: -0.0905 REMARK 3 S21: -0.6065 S22: 0.0271 S23: -0.5357 REMARK 3 S31: 0.1030 S32: 0.0756 S33: 0.0527 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0162 -55.2873 55.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0702 REMARK 3 T33: 0.0334 T12: 0.0001 REMARK 3 T13: 0.0134 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.3848 L22: 7.5011 REMARK 3 L33: 4.9111 L12: 3.3825 REMARK 3 L13: 2.2212 L23: 4.3727 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: 0.0339 S13: 0.0632 REMARK 3 S21: -0.1563 S22: 0.0120 S23: -0.0662 REMARK 3 S31: -0.0121 S32: 0.0727 S33: 0.0673 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0784 -50.7785 61.4818 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0486 REMARK 3 T33: 0.0470 T12: -0.0068 REMARK 3 T13: 0.0003 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.1460 L22: 1.1654 REMARK 3 L33: 1.3278 L12: -0.2950 REMARK 3 L13: 0.1861 L23: -0.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.0445 S13: 0.0601 REMARK 3 S21: 0.0227 S22: 0.0005 S23: -0.0967 REMARK 3 S31: -0.0374 S32: 0.0328 S33: 0.0231 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0823 -59.0639 44.3852 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1157 REMARK 3 T33: 0.0658 T12: -0.0161 REMARK 3 T13: -0.0037 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 6.9658 L22: 0.1995 REMARK 3 L33: 2.7123 L12: 0.9942 REMARK 3 L13: -3.9140 L23: -0.3900 REMARK 3 S TENSOR REMARK 3 S11: -0.2841 S12: 0.0934 S13: -0.4309 REMARK 3 S21: -0.0649 S22: 0.0111 S23: -0.0511 REMARK 3 S31: 0.5109 S32: -0.0997 S33: 0.2513 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1003 -45.4797 44.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1073 REMARK 3 T33: 0.0511 T12: 0.0345 REMARK 3 T13: -0.0069 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 8.2064 L22: 7.7078 REMARK 3 L33: 2.7152 L12: 4.7321 REMARK 3 L13: 0.3213 L23: 0.0806 REMARK 3 S TENSOR REMARK 3 S11: -0.1935 S12: 0.2013 S13: 0.4427 REMARK 3 S21: -0.2386 S22: 0.1766 S23: 0.3250 REMARK 3 S31: -0.3190 S32: -0.2748 S33: -0.0042 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5902 -47.7587 45.9411 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1059 REMARK 3 T33: 0.0701 T12: -0.0304 REMARK 3 T13: 0.0309 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.9316 L22: 1.9190 REMARK 3 L33: 3.2003 L12: -0.6108 REMARK 3 L13: -0.0829 L23: -1.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0880 S13: 0.2936 REMARK 3 S21: -0.1985 S22: 0.0356 S23: -0.4185 REMARK 3 S31: -0.2024 S32: 0.2496 S33: -0.0275 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0838 -53.0337 38.5083 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.1173 REMARK 3 T33: 0.0197 T12: 0.0046 REMARK 3 T13: 0.0121 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.1615 L22: 5.6055 REMARK 3 L33: 5.9784 L12: 1.1915 REMARK 3 L13: 0.9134 L23: 0.5910 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: 0.1874 S13: 0.1600 REMARK 3 S21: -0.2668 S22: -0.0460 S23: 0.2194 REMARK 3 S31: 0.1335 S32: -0.3553 S33: 0.1058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 20.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.11700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 4C1D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE, 24.5% (V/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 1 MM TRIS(2-CARBOXYETHYL)PHOSPHINE, 5 REMARK 280 MM (S)-1-ALLYL-2-(3-METHOXYPHENYL)-3-OXOISOINDOLINE-4-CARBOXYLIC REMARK 280 ACID, 16 MG/ML PROTEIN, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.92000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 36 CB CG1 CG2 REMARK 470 SER A 37 CB OG REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 ARG A 262 C O CG CD NE CZ NH1 REMARK 470 ARG A 262 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 743 O HOH A 777 1.95 REMARK 500 O HOH A 689 O HOH A 795 2.15 REMARK 500 OG SER A 154 O HOH A 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 668 O HOH A 746 1455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.93 71.68 REMARK 500 TRP A 87 65.36 66.49 REMARK 500 ALA A 178 -105.50 -154.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 98.0 REMARK 620 3 HIS A 179 NE2 105.5 104.7 REMARK 620 4 HOH A 771 O 121.2 118.2 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 107.1 REMARK 620 3 HIS A 240 NE2 94.5 103.9 REMARK 620 4 HOH A 681 O 158.2 94.3 75.8 REMARK 620 5 HOH A 771 O 101.9 117.1 128.0 71.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6TU A 503 DBREF 5LCH A 1 266 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU HET ZN A 501 1 HET ZN A 502 1 HET 6TU A 503 24 HETNAM ZN ZINC ION HETNAM 6TU (1~{S})-2-(3-METHOXYPHENYL)-3-OXIDANYLIDENE-1-PROP-2- HETNAM 2 6TU ENYL-1~{H}-ISOINDOLE-4-CARBOXYLIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 6TU C19 H17 N O4 FORMUL 5 HOH *234(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ARG A 262 1 17 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O SER A 55 N TYR A 47 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 TYR A 187 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 501 1555 1555 2.09 LINK ND1 HIS A 116 ZN ZN A 501 1555 1555 2.06 LINK OD2 ASP A 118 ZN ZN A 502 1555 1555 2.04 LINK NE2 HIS A 179 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 198 ZN ZN A 502 1555 1555 2.27 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.07 LINK ZN ZN A 501 O HOH A 771 1555 1555 1.84 LINK ZN ZN A 502 O HOH A 681 1555 1555 2.40 LINK ZN ZN A 502 O HOH A 771 1555 1555 1.99 SITE 1 AC1 5 HIS A 114 HIS A 116 HIS A 179 ZN A 502 SITE 2 AC1 5 HOH A 771 SITE 1 AC2 6 ASP A 118 CYS A 198 HIS A 240 ZN A 501 SITE 2 AC2 6 HOH A 681 HOH A 771 SITE 1 AC3 14 PHE A 62 TYR A 67 TRP A 87 HIS A 116 SITE 2 AC3 14 ASP A 118 HIS A 179 ARG A 205 GLY A 209 SITE 3 AC3 14 ASN A 210 HIS A 240 HOH A 648 HOH A 681 SITE 4 AC3 14 HOH A 693 HOH A 697 CRYST1 39.870 67.840 40.350 90.00 91.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025082 0.000000 0.000766 0.00000 SCALE2 0.000000 0.014741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024795 0.00000