HEADER CELL CYCLE 24-JUN-16 5LDA TITLE STRUCTURE OF DEUBIQUITINATING ENZYME HOMOLOG (PYROCOCCUS FURIOSUS TITLE 2 JAMM1) IN COMPLEX WITH UBIQUITIN-LIKE SAMP2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAMM1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SAMP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 GENE: PF1070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 9 3638 / JCM 8422 / VC1); SOURCE 10 ORGANISM_TAXID: 186497; SOURCE 11 GENE: PF1061; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS JAMM/MPN+, METALLOPROTEASE, DEUBIQUITINATION, UBIQUITIN-LIKE PROTEIN, KEYWDS 2 CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.CAO,S.ENGILBERGE,E.GIRARD,F.GABEL,B.FRANZETTI,J.A.MAUPIN-FURLOW REVDAT 3 30-MAR-22 5LDA 1 LINK REVDAT 2 30-AUG-17 5LDA 1 REMARK REVDAT 1 21-JUN-17 5LDA 0 JRNL AUTH S.CAO,S.ENGILBERGE,E.GIRARD,F.GABEL,B.FRANZETTI, JRNL AUTH 2 J.A.MAUPIN-FURLOW JRNL TITL STRUCTURAL INSIGHT INTO UBIQUITIN-LIKE PROTEIN RECOGNITION JRNL TITL 2 AND OLIGOMERIC STATES OF JAMM/MPN(+) PROTEASES. JRNL REF STRUCTURE V. 25 823 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28479062 JRNL DOI 10.1016/J.STR.2017.04.002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 16046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7427 - 3.4527 0.98 2641 139 0.1514 0.1938 REMARK 3 2 3.4527 - 2.7406 0.99 2563 135 0.1791 0.2268 REMARK 3 3 2.7406 - 2.3942 0.99 2571 135 0.1796 0.1771 REMARK 3 4 2.3942 - 2.1753 0.98 2543 134 0.1894 0.2368 REMARK 3 5 2.1753 - 2.0194 0.99 2544 134 0.2065 0.2266 REMARK 3 6 2.0194 - 1.9003 0.93 2381 126 0.2643 0.2950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1507 REMARK 3 ANGLE : 0.641 2030 REMARK 3 CHIRALITY : 0.056 234 REMARK 3 PLANARITY : 0.004 258 REMARK 3 DIHEDRAL : 17.645 926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:27) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9653 16.3462 59.6465 REMARK 3 T TENSOR REMARK 3 T11: 0.2980 T22: 0.2019 REMARK 3 T33: 0.4054 T12: 0.0011 REMARK 3 T13: 0.0238 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 7.5316 L22: 3.3524 REMARK 3 L33: 5.1418 L12: -4.4935 REMARK 3 L13: 4.7292 L23: -4.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.0272 S13: -0.2275 REMARK 3 S21: 0.3781 S22: 0.0312 S23: 0.0396 REMARK 3 S31: -0.3714 S32: -0.0361 S33: -0.0130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 28:56) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0235 9.1639 54.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2406 REMARK 3 T33: 0.3026 T12: -0.0297 REMARK 3 T13: 0.0004 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 7.7406 L22: 6.5362 REMARK 3 L33: 2.5958 L12: -2.8766 REMARK 3 L13: 0.7763 L23: -0.3497 REMARK 3 S TENSOR REMARK 3 S11: 0.1063 S12: 0.3173 S13: -0.5772 REMARK 3 S21: -0.2865 S22: -0.1773 S23: 0.3239 REMARK 3 S31: 0.0756 S32: -0.0185 S33: 0.0112 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 57:68) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1568 3.1388 52.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.3603 REMARK 3 T33: 0.4035 T12: 0.0225 REMARK 3 T13: 0.0343 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 5.3431 L22: 6.6574 REMARK 3 L33: 5.3422 L12: 0.3136 REMARK 3 L13: 5.2637 L23: -0.7501 REMARK 3 S TENSOR REMARK 3 S11: 0.4050 S12: 0.3448 S13: -0.5169 REMARK 3 S21: -0.6050 S22: -0.3036 S23: -0.1362 REMARK 3 S31: 0.7484 S32: -0.2441 S33: -0.2584 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 69:85) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2961 8.5363 43.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.5481 T22: 0.5695 REMARK 3 T33: 0.4727 T12: -0.0054 REMARK 3 T13: -0.1464 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 8.1410 L22: 3.5165 REMARK 3 L33: 7.9321 L12: -1.8837 REMARK 3 L13: 3.0648 L23: 3.7978 REMARK 3 S TENSOR REMARK 3 S11: 0.2977 S12: 1.0343 S13: -0.6504 REMARK 3 S21: -0.8925 S22: -0.3428 S23: 0.4389 REMARK 3 S31: 0.3278 S32: -0.0480 S33: -0.0256 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 86:100) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3251 14.5788 59.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.2431 REMARK 3 T33: 0.2340 T12: -0.0069 REMARK 3 T13: -0.0212 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 6.1672 L22: 6.4183 REMARK 3 L33: 4.0858 L12: 3.3129 REMARK 3 L13: -1.9492 L23: -1.5834 REMARK 3 S TENSOR REMARK 3 S11: 0.2121 S12: -0.2262 S13: -0.1599 REMARK 3 S21: 0.3360 S22: -0.2236 S23: -0.6563 REMARK 3 S31: -0.2218 S32: 0.4538 S33: 0.0117 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 101:118) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4397 16.0051 53.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.2966 T22: 0.3353 REMARK 3 T33: 0.3097 T12: -0.0209 REMARK 3 T13: 0.0253 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 6.0090 L22: 6.9624 REMARK 3 L33: 2.5155 L12: 0.8438 REMARK 3 L13: -1.1111 L23: -3.5957 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.3780 S13: -0.0259 REMARK 3 S21: -0.4400 S22: -0.1920 S23: -0.5085 REMARK 3 S31: -0.3271 S32: 0.6833 S33: 0.2988 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 119:140) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8726 24.0771 55.0228 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.2782 REMARK 3 T33: 0.2586 T12: -0.0283 REMARK 3 T13: -0.0346 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 6.7761 L22: 7.1976 REMARK 3 L33: 4.3448 L12: 1.1516 REMARK 3 L13: -1.4733 L23: -1.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: 0.3738 S13: 1.0688 REMARK 3 S21: -0.4184 S22: 0.2131 S23: 0.3688 REMARK 3 S31: 0.0387 S32: 0.2852 S33: -0.1593 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 5:12) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1588 13.1134 34.9084 REMARK 3 T TENSOR REMARK 3 T11: 0.8335 T22: 1.0973 REMARK 3 T33: 0.3453 T12: -0.0401 REMARK 3 T13: -0.1137 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 2.6325 L22: 6.6468 REMARK 3 L33: 5.1661 L12: 1.8708 REMARK 3 L13: 2.5239 L23: 5.6238 REMARK 3 S TENSOR REMARK 3 S11: 0.3238 S12: 1.5181 S13: -0.0123 REMARK 3 S21: -0.8073 S22: -0.2876 S23: 0.3184 REMARK 3 S31: -1.1160 S32: -0.3737 S33: -0.2674 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 13:25) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6676 5.4008 28.5579 REMARK 3 T TENSOR REMARK 3 T11: 1.4091 T22: 1.2859 REMARK 3 T33: 0.6384 T12: 0.2371 REMARK 3 T13: 0.0590 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 0.5581 L22: 1.6949 REMARK 3 L33: 0.1703 L12: 0.8902 REMARK 3 L13: 0.0569 L23: -0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.9886 S13: 0.0563 REMARK 3 S21: -0.9103 S22: 0.2481 S23: -0.6253 REMARK 3 S31: 0.1783 S32: 0.5682 S33: -0.3620 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 26:44) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8953 3.3399 35.3597 REMARK 3 T TENSOR REMARK 3 T11: 0.7855 T22: 1.1094 REMARK 3 T33: 0.4219 T12: 0.0743 REMARK 3 T13: 0.1313 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 2.2783 L22: 9.7969 REMARK 3 L33: 3.8551 L12: 3.3301 REMARK 3 L13: 2.9196 L23: 4.8259 REMARK 3 S TENSOR REMARK 3 S11: -0.4916 S12: 1.6333 S13: -0.8140 REMARK 3 S21: -0.7427 S22: 0.5040 S23: -1.4087 REMARK 3 S31: 1.2543 S32: 0.5699 S33: -0.2546 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 45:57) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4424 -3.0789 29.3907 REMARK 3 T TENSOR REMARK 3 T11: 1.1667 T22: 0.8280 REMARK 3 T33: 0.7517 T12: 0.0336 REMARK 3 T13: -0.0672 T23: -0.1200 REMARK 3 L TENSOR REMARK 3 L11: 6.9921 L22: 3.2994 REMARK 3 L33: 5.6360 L12: -4.6536 REMARK 3 L13: 1.3709 L23: -1.9460 REMARK 3 S TENSOR REMARK 3 S11: 0.7063 S12: 0.8702 S13: -0.8921 REMARK 3 S21: -1.6124 S22: -0.7054 S23: -0.3128 REMARK 3 S31: 1.7663 S32: -0.2629 S33: 0.4661 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 58:69) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3382 6.9716 38.7189 REMARK 3 T TENSOR REMARK 3 T11: 0.5517 T22: 0.8590 REMARK 3 T33: 0.3878 T12: 0.0686 REMARK 3 T13: 0.0319 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.6140 L22: 5.5095 REMARK 3 L33: 4.8840 L12: -0.1645 REMARK 3 L13: -1.6197 L23: 2.5293 REMARK 3 S TENSOR REMARK 3 S11: 0.4645 S12: 1.4479 S13: 0.1445 REMARK 3 S21: -1.0929 S22: 0.3786 S23: -0.1373 REMARK 3 S31: 0.0118 S32: 0.5719 S33: -0.9520 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939, 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS,200 MM NACL, 25 % REMARK 280 PEG3350, 10 % GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.61650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 MSE B 3 REMARK 465 ILE B 4 REMARK 465 LYS B 15 REMARK 465 GLU B 16 REMARK 465 ILE B 17 REMARK 465 GLU B 18 REMARK 465 TRP B 19 REMARK 465 ARG B 20 REMARK 465 GLU B 21 REMARK 465 GLY B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 5 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 320 O HOH A 351 1.77 REMARK 500 O HOH A 374 O HOH B 703 1.95 REMARK 500 O HOH A 348 O HOH A 358 1.97 REMARK 500 O HOH A 349 O HOH A 359 2.11 REMARK 500 O HOH A 353 O HOH A 356 2.12 REMARK 500 O HOH A 350 O HOH A 354 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 305 O HOH A 357 2647 1.80 REMARK 500 O HOH A 370 O HOH A 375 2657 1.88 REMARK 500 O HOH A 358 O HOH A 370 2647 2.06 REMARK 500 O HOH A 348 O HOH A 365 2647 2.11 REMARK 500 O HOH A 374 O HOH A 377 2757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 43 -113.24 61.07 REMARK 500 VAL A 110 -169.00 -118.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 110.3 REMARK 620 3 ASP A 101 OD2 100.6 123.2 REMARK 620 4 GLY B 69 OXT 125.5 95.8 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 DBREF 5LDA A 12 140 UNP Q8U1Y4 Q8U1Y4_PYRFU 12 140 DBREF 5LDA B 2 69 UNP Q8U1Z3 Q8U1Z3_PYRFU 2 69 SEQADV 5LDA MSE A 11 UNP Q8U1Y4 INITIATING METHIONINE SEQADV 5LDA MSE B 1 UNP Q8U1Z3 INITIATING METHIONINE SEQRES 1 A 130 MSE SER THR LEU ILE ILE PRO GLN HIS TYR LEU ARG ALA SEQRES 2 A 130 ILE LEU LYS VAL VAL SER SER SER SER VAL GLU VAL CYS SEQRES 3 A 130 GLY PHE LEU PHE GLY LYS GLU ASN ARG VAL LEU LYS VAL SEQRES 4 A 130 ARG PHE ILE ARG ASN ARG LEU ASN SER PRO VAL GLU PHE SEQRES 5 A 130 GLU MSE ASP PRO GLU GLU MSE LEU LYS ALA LEU GLU GLU SEQRES 6 A 130 ALA GLU GLN GLU ASN LEU GLU VAL VAL GLY ILE PHE HIS SEQRES 7 A 130 SER HIS ILE ALA CYS PRO PRO ILE PRO SER GLY LYS ASP SEQRES 8 A 130 LEU GLU GLY MSE LYS ARG TRP PRO VAL ILE TRP LEU ILE SEQRES 9 A 130 VAL ASN GLU LYS GLY GLU TYR LYS ALA TRP ILE LEU SER SEQRES 10 A 130 GLU LYS ASN LYS ILE SER GLU VAL LYS ILE VAL VAL GLU SEQRES 1 B 69 MSE LYS MSE ILE LYS VAL LYS VAL ILE GLY ARG ASN ILE SEQRES 2 B 69 GLU LYS GLU ILE GLU TRP ARG GLU GLY MSE LYS VAL ARG SEQRES 3 B 69 ASP ILE LEU ARG ALA VAL GLY PHE ASN THR GLU SER ALA SEQRES 4 B 69 ILE ALA LYS VAL ASN GLY LYS VAL VAL LEU GLU ASP ASP SEQRES 5 B 69 GLU VAL LYS ASP GLY ASP PHE VAL GLU VAL ILE PRO VAL SEQRES 6 B 69 VAL SER GLY GLY MODRES 5LDA MSE A 64 MET MODIFIED RESIDUE MODRES 5LDA MSE A 69 MET MODIFIED RESIDUE MODRES 5LDA MSE A 105 MET MODIFIED RESIDUE MODRES 5LDA MSE B 23 MET MODIFIED RESIDUE HET MSE A 11 16 HET MSE A 64 17 HET MSE A 69 17 HET MSE A 105 17 HET MSE B 23 16 HET ZN A 201 1 HET GOL B 601 14 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *91(H2 O) HELIX 1 AA1 GLN A 18 SER A 30 1 13 HELIX 2 AA2 ASP A 65 GLU A 79 1 15 HELIX 3 AA3 SER A 98 TRP A 108 1 11 HELIX 4 AA4 LYS B 24 VAL B 32 1 9 SHEET 1 AA1 8 THR A 13 PRO A 17 0 SHEET 2 AA1 8 ARG A 45 ILE A 52 1 O VAL A 46 N ILE A 15 SHEET 3 AA1 8 CYS A 36 LYS A 42 -1 N CYS A 36 O ILE A 52 SHEET 4 AA1 8 GLU A 82 HIS A 90 -1 O GLY A 85 N LEU A 39 SHEET 5 AA1 8 ILE A 111 ASN A 116 1 O LEU A 113 N ILE A 86 SHEET 6 AA1 8 TYR A 121 LEU A 126 -1 O LYS A 122 N ILE A 114 SHEET 7 AA1 8 ILE A 132 GLU A 140 -1 O VAL A 135 N ALA A 123 SHEET 8 AA1 8 THR A 13 PRO A 17 1 N LEU A 14 O VAL A 138 SHEET 1 AA2 2 PHE A 62 GLU A 63 0 SHEET 2 AA2 2 SER B 67 GLY B 68 -1 O GLY B 68 N PHE A 62 SHEET 1 AA3 4 VAL B 6 VAL B 8 0 SHEET 2 AA3 4 VAL B 60 PRO B 64 1 O VAL B 62 N LYS B 7 SHEET 3 AA3 4 ALA B 39 VAL B 43 -1 N ILE B 40 O ILE B 63 SHEET 4 AA3 4 LYS B 46 VAL B 48 -1 O LYS B 46 N VAL B 43 LINK C MSE A 11 N SER A 12 1555 1555 1.33 LINK C GLU A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ASP A 65 1555 1555 1.33 LINK C GLU A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N LEU A 70 1555 1555 1.34 LINK C GLY A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N LYS A 106 1555 1555 1.34 LINK C MSE B 23 N LYS B 24 1555 1555 1.33 LINK NE2 HIS A 88 ZN ZN A 201 1555 1555 2.17 LINK NE2 HIS A 90 ZN ZN A 201 1555 1555 1.97 LINK OD2 ASP A 101 ZN ZN A 201 1555 1555 2.09 LINK ZN ZN A 201 OXT GLY B 69 1555 1555 2.09 SITE 1 AC1 4 HIS A 88 HIS A 90 ASP A 101 GLY B 69 SITE 1 AC2 4 GLU A 77 ILE B 9 LYS B 42 GLU B 61 CRYST1 47.110 37.233 59.528 90.00 97.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021227 0.000000 0.002718 0.00000 SCALE2 0.000000 0.026858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016936 0.00000 HETATM 1 N MSE A 11 25.684 26.188 46.871 1.00123.94 N ANISOU 1 N MSE A 11 13159 16783 17148 -275 862 4310 N HETATM 2 CA MSE A 11 24.534 26.575 47.678 1.00125.06 C ANISOU 2 CA MSE A 11 13803 16337 17378 -464 461 3680 C HETATM 3 C MSE A 11 24.986 27.403 48.876 1.00133.94 C ANISOU 3 C MSE A 11 14931 16881 19080 -987 -62 3818 C HETATM 4 O MSE A 11 26.173 27.697 49.022 1.00142.76 O ANISOU 4 O MSE A 11 15680 18049 20512 -1187 -199 4280 O HETATM 5 CB MSE A 11 23.766 25.337 48.140 1.00116.81 C ANISOU 5 CB MSE A 11 13083 15293 16006 -189 548 2878 C HETATM 6 CG MSE A 11 23.393 24.392 47.004 1.00118.71 C ANISOU 6 CG MSE A 11 13387 16021 15695 339 932 2686 C HETATM 7 SE MSE A 11 22.153 22.986 47.538 1.00162.85 SE ANISOU 7 SE MSE A 11 19417 21450 21010 577 857 1728 SE HETATM 8 CE MSE A 11 23.240 21.421 47.115 1.00113.41 C ANISOU 8 CE MSE A 11 12973 15674 14445 1018 1201 1731 C HETATM 9 HA MSE A 11 23.936 27.111 47.134 1.00150.08 H HETATM 10 HB2 MSE A 11 24.316 24.843 48.768 1.00140.17 H HETATM 11 HB3 MSE A 11 22.946 25.620 48.573 1.00140.17 H HETATM 12 HG2 MSE A 11 22.974 24.905 46.295 1.00142.45 H HETATM 13 HG3 MSE A 11 24.199 23.968 46.671 1.00142.45 H HETATM 14 HE1 MSE A 11 22.738 20.620 47.335 1.00136.10 H HETATM 15 HE2 MSE A 11 23.451 21.430 46.168 1.00136.10 H HETATM 16 HE3 MSE A 11 24.057 21.454 47.637 1.00136.10 H