HEADER HYDROLASE 27-JUN-16 5LDM TITLE CRYSTAL STRUCTURE OF E.COLI LIGT COMPLEXED WITH 2'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 2',3'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNA 2',3'-CPDASE; COMPND 5 EC: 3.1.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN B / BL21-DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 GENE: THPR, ECBD_3472; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTH 27 KEYWDS ENZYME, 2H PHOSPHOESTERASE/LIGASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,P.KURSULA REVDAT 4 10-JAN-24 5LDM 1 REMARK REVDAT 3 17-JAN-18 5LDM 1 REMARK REVDAT 2 08-FEB-17 5LDM 1 JRNL REVDAT 1 18-JAN-17 5LDM 0 JRNL AUTH M.MYLLYKOSKI,P.KURSULA JRNL TITL STRUCTURAL ASPECTS OF NUCLEOTIDE LIGAND BINDING BY A JRNL TITL 2 BACTERIAL 2H PHOSPHOESTERASE. JRNL REF PLOS ONE V. 12 70355 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28141848 JRNL DOI 10.1371/JOURNAL.PONE.0170355 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 15432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0372 - 5.4603 1.00 1441 160 0.1688 0.2089 REMARK 3 2 5.4603 - 4.3386 1.00 1353 148 0.1470 0.1970 REMARK 3 3 4.3386 - 3.7916 1.00 1338 150 0.1673 0.2112 REMARK 3 4 3.7916 - 3.4455 1.00 1307 146 0.2019 0.2847 REMARK 3 5 3.4455 - 3.1989 1.00 1309 146 0.2155 0.2640 REMARK 3 6 3.1989 - 3.0105 1.00 1304 145 0.2337 0.3151 REMARK 3 7 3.0105 - 2.8599 1.00 1314 146 0.2425 0.3090 REMARK 3 8 2.8599 - 2.7355 1.00 1289 144 0.2528 0.3416 REMARK 3 9 2.7355 - 2.6302 1.00 1295 143 0.2563 0.3005 REMARK 3 10 2.6302 - 2.5395 0.93 1210 138 0.2970 0.3850 REMARK 3 11 2.5395 - 2.4602 0.57 728 78 0.3424 0.3944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2943 REMARK 3 ANGLE : 0.937 4015 REMARK 3 CHIRALITY : 0.053 427 REMARK 3 PLANARITY : 0.003 517 REMARK 3 DIHEDRAL : 18.405 1097 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8002 -39.5382 21.2884 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.3878 REMARK 3 T33: 0.6393 T12: -0.0469 REMARK 3 T13: 0.0033 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 8.1637 L22: 2.5554 REMARK 3 L33: 7.6628 L12: -0.2966 REMARK 3 L13: 4.3495 L23: 0.6151 REMARK 3 S TENSOR REMARK 3 S11: 0.6282 S12: 0.2529 S13: 1.1604 REMARK 3 S21: 0.2181 S22: -0.2598 S23: -0.8641 REMARK 3 S31: -0.2954 S32: 0.8725 S33: -0.2514 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4018 -32.9244 10.2894 REMARK 3 T TENSOR REMARK 3 T11: 0.4536 T22: 0.5851 REMARK 3 T33: 0.3983 T12: 0.0133 REMARK 3 T13: -0.0191 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.8992 L22: 3.1745 REMARK 3 L33: 9.7205 L12: -1.1097 REMARK 3 L13: 1.0064 L23: -5.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.3040 S12: 1.0938 S13: 0.5658 REMARK 3 S21: -1.3141 S22: -0.0036 S23: -0.3357 REMARK 3 S31: 0.2866 S32: -0.2767 S33: 0.2108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9940 -36.3906 21.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.4431 T22: 0.4187 REMARK 3 T33: 0.4922 T12: -0.0631 REMARK 3 T13: 0.0335 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 8.9813 L22: 5.8562 REMARK 3 L33: 7.8786 L12: -3.0190 REMARK 3 L13: 5.6050 L23: -2.6145 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: 1.1157 S13: 0.3767 REMARK 3 S21: -0.4090 S22: -0.2762 S23: -0.7945 REMARK 3 S31: 0.0603 S32: 0.8630 S33: 0.0910 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8952 -36.2193 27.6629 REMARK 3 T TENSOR REMARK 3 T11: 0.4755 T22: 0.4008 REMARK 3 T33: 0.4280 T12: -0.0368 REMARK 3 T13: -0.0903 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 5.3229 L22: 2.5241 REMARK 3 L33: 2.1482 L12: -1.0483 REMARK 3 L13: 0.9653 L23: -0.8526 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.1337 S13: 0.5802 REMARK 3 S21: 0.4577 S22: -0.0632 S23: -0.5205 REMARK 3 S31: -0.0906 S32: 0.2811 S33: 0.0282 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8735 -37.9518 35.7304 REMARK 3 T TENSOR REMARK 3 T11: 0.7815 T22: 0.4843 REMARK 3 T33: 0.6266 T12: -0.0503 REMARK 3 T13: -0.1382 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 2.0465 L22: 8.6376 REMARK 3 L33: 4.1961 L12: 3.6438 REMARK 3 L13: -2.0541 L23: -2.2181 REMARK 3 S TENSOR REMARK 3 S11: 0.3935 S12: -0.7842 S13: -0.1970 REMARK 3 S21: 1.1134 S22: -0.3104 S23: -0.8129 REMARK 3 S31: -0.4147 S32: 0.6838 S33: -0.2581 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9770 -27.3701 24.2355 REMARK 3 T TENSOR REMARK 3 T11: 0.6478 T22: 0.5050 REMARK 3 T33: 0.8458 T12: -0.1104 REMARK 3 T13: -0.0819 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 6.0063 L22: 4.1324 REMARK 3 L33: 4.7599 L12: -3.4078 REMARK 3 L13: -0.1912 L23: -2.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.3036 S12: -0.2310 S13: 1.9212 REMARK 3 S21: 0.8311 S22: -0.3837 S23: -0.5133 REMARK 3 S31: -1.0143 S32: 0.4068 S33: 0.9976 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6882 -37.4756 18.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.3490 T22: 0.4196 REMARK 3 T33: 0.2380 T12: -0.0147 REMARK 3 T13: -0.0015 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 5.4111 L22: 4.6261 REMARK 3 L33: 0.1114 L12: -0.8237 REMARK 3 L13: 0.7128 L23: 0.7499 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.2383 S13: 0.4599 REMARK 3 S21: -0.0842 S22: -0.0478 S23: -0.3241 REMARK 3 S31: -0.1271 S32: -0.0703 S33: 0.0441 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6774 -45.2679 21.0763 REMARK 3 T TENSOR REMARK 3 T11: 0.3730 T22: 0.5034 REMARK 3 T33: 0.5550 T12: -0.0459 REMARK 3 T13: -0.0931 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 3.1407 L22: 9.5638 REMARK 3 L33: 6.5569 L12: 1.8777 REMARK 3 L13: -4.4370 L23: -2.9824 REMARK 3 S TENSOR REMARK 3 S11: -0.3329 S12: 0.4755 S13: -0.1605 REMARK 3 S21: -0.4058 S22: 0.3491 S23: -0.4869 REMARK 3 S31: 0.5995 S32: -0.4893 S33: 0.4364 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8987 -27.8321 13.9091 REMARK 3 T TENSOR REMARK 3 T11: 0.5674 T22: 0.4332 REMARK 3 T33: 0.6719 T12: -0.0452 REMARK 3 T13: 0.1428 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 7.3815 L22: 1.2607 REMARK 3 L33: 6.8451 L12: -0.6735 REMARK 3 L13: 1.5583 L23: 2.6719 REMARK 3 S TENSOR REMARK 3 S11: -0.6629 S12: -0.4466 S13: -1.2043 REMARK 3 S21: 0.7610 S22: 0.7851 S23: 0.5299 REMARK 3 S31: 1.3949 S32: 0.2143 S33: -0.0682 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9146 -20.6731 16.8025 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.3725 REMARK 3 T33: 0.3917 T12: -0.0203 REMARK 3 T13: -0.0844 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 6.5782 L22: 6.8852 REMARK 3 L33: 5.5295 L12: -1.1274 REMARK 3 L13: -2.7499 L23: 2.6170 REMARK 3 S TENSOR REMARK 3 S11: -0.2171 S12: -0.4157 S13: -0.6735 REMARK 3 S21: 0.2638 S22: 0.2386 S23: 0.0931 REMARK 3 S31: 0.4138 S32: 0.2367 S33: -0.0391 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3977 -16.2633 6.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.4898 REMARK 3 T33: 0.4105 T12: -0.0007 REMARK 3 T13: -0.0610 T23: -0.1369 REMARK 3 L TENSOR REMARK 3 L11: 5.3821 L22: 2.5646 REMARK 3 L33: 1.7305 L12: 0.0637 REMARK 3 L13: 0.4887 L23: -0.9371 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.6431 S13: -0.4346 REMARK 3 S21: -0.4847 S22: 0.0290 S23: 0.2579 REMARK 3 S31: 0.2672 S32: 0.0099 S33: 0.0064 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6100 -27.2779 3.1007 REMARK 3 T TENSOR REMARK 3 T11: 0.9790 T22: 0.7997 REMARK 3 T33: 1.1441 T12: -0.0873 REMARK 3 T13: -0.1939 T23: -0.3038 REMARK 3 L TENSOR REMARK 3 L11: 5.7326 L22: 8.2910 REMARK 3 L33: 8.1315 L12: -0.1749 REMARK 3 L13: -3.0838 L23: 5.7052 REMARK 3 S TENSOR REMARK 3 S11: 0.5071 S12: 1.4035 S13: -0.9924 REMARK 3 S21: -0.3280 S22: -0.7790 S23: 0.4208 REMARK 3 S31: 1.3424 S32: -0.9978 S33: 0.2726 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9469 -14.9587 16.5448 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.3931 REMARK 3 T33: 0.4203 T12: 0.0153 REMARK 3 T13: 0.0202 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.5858 L22: 4.8160 REMARK 3 L33: 0.2704 L12: 0.4472 REMARK 3 L13: -0.8501 L23: 1.4459 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.1289 S13: -0.0922 REMARK 3 S21: 0.0135 S22: -0.1171 S23: 0.7588 REMARK 3 S31: 0.0838 S32: -0.2649 S33: 0.0806 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9203 -24.6098 16.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.5662 T22: 0.5297 REMARK 3 T33: 0.6101 T12: -0.0488 REMARK 3 T13: 0.1195 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 4.1980 L22: 4.6094 REMARK 3 L33: 9.6396 L12: 3.4304 REMARK 3 L13: -2.7418 L23: -5.5470 REMARK 3 S TENSOR REMARK 3 S11: 0.2950 S12: -0.4573 S13: -0.4572 REMARK 3 S21: 0.9237 S22: -0.2340 S23: 0.1923 REMARK 3 S31: -0.4850 S32: -0.3683 S33: -0.1337 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.58 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID: 5LDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 7.5, 0.2 M MGCL2, REMARK 280 12% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.03500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.03500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.03500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.03500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLN B 117 REMARK 465 SER B 118 REMARK 465 ASN B 119 REMARK 465 ARG B 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 125.63 -170.26 REMARK 500 THR A 175 -4.35 74.20 REMARK 500 PHE B 159 75.58 -153.26 REMARK 500 ARG B 161 -126.55 59.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2AM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2AM B 201 DBREF1 5LDM A 1 176 UNP A0A140NFI1_ECOBD DBREF2 5LDM A A0A140NFI1 1 176 DBREF1 5LDM B 1 176 UNP A0A140NFI1_ECOBD DBREF2 5LDM B A0A140NFI1 1 176 SEQADV 5LDM GLY A 0 UNP A0A140NFI EXPRESSION TAG SEQADV 5LDM GLY B 0 UNP A0A140NFI EXPRESSION TAG SEQRES 1 A 177 GLY MET SER GLU PRO GLN ARG LEU PHE PHE ALA ILE ASP SEQRES 2 A 177 LEU PRO ALA GLU ILE ARG GLU GLN ILE ILE HIS TRP ARG SEQRES 3 A 177 ALA LYS HIS PHE PRO PRO GLU ALA GLY ARG PRO VAL ALA SEQRES 4 A 177 ALA ASP ASN LEU HIS LEU THR LEU ALA PHE LEU GLY GLU SEQRES 5 A 177 VAL SER ALA GLU LYS GLU LYS ALA LEU SER LEU LEU ALA SEQRES 6 A 177 GLY ARG ILE ARG GLN PRO GLY PHE THR LEU THR LEU ASP SEQRES 7 A 177 ASP ALA GLY GLN TRP LEU ARG SER ARG VAL VAL TRP LEU SEQRES 8 A 177 GLY MET ARG GLN PRO PRO ARG GLY LEU ILE GLN LEU ALA SEQRES 9 A 177 ASN MET LEU ARG SER GLN ALA ALA ARG SER GLY CYS PHE SEQRES 10 A 177 GLN SER ASN ARG PRO PHE HIS PRO HIS ILE THR LEU LEU SEQRES 11 A 177 ARG ASP ALA SER GLU ALA VAL THR ILE PRO PRO PRO GLY SEQRES 12 A 177 PHE ASN TRP SER TYR ALA VAL THR GLU PHE THR LEU TYR SEQRES 13 A 177 ALA SER SER PHE ALA ARG GLY ARG THR ARG TYR THR PRO SEQRES 14 A 177 LEU LYS ARG TRP ALA LEU THR GLN SEQRES 1 B 177 GLY MET SER GLU PRO GLN ARG LEU PHE PHE ALA ILE ASP SEQRES 2 B 177 LEU PRO ALA GLU ILE ARG GLU GLN ILE ILE HIS TRP ARG SEQRES 3 B 177 ALA LYS HIS PHE PRO PRO GLU ALA GLY ARG PRO VAL ALA SEQRES 4 B 177 ALA ASP ASN LEU HIS LEU THR LEU ALA PHE LEU GLY GLU SEQRES 5 B 177 VAL SER ALA GLU LYS GLU LYS ALA LEU SER LEU LEU ALA SEQRES 6 B 177 GLY ARG ILE ARG GLN PRO GLY PHE THR LEU THR LEU ASP SEQRES 7 B 177 ASP ALA GLY GLN TRP LEU ARG SER ARG VAL VAL TRP LEU SEQRES 8 B 177 GLY MET ARG GLN PRO PRO ARG GLY LEU ILE GLN LEU ALA SEQRES 9 B 177 ASN MET LEU ARG SER GLN ALA ALA ARG SER GLY CYS PHE SEQRES 10 B 177 GLN SER ASN ARG PRO PHE HIS PRO HIS ILE THR LEU LEU SEQRES 11 B 177 ARG ASP ALA SER GLU ALA VAL THR ILE PRO PRO PRO GLY SEQRES 12 B 177 PHE ASN TRP SER TYR ALA VAL THR GLU PHE THR LEU TYR SEQRES 13 B 177 ALA SER SER PHE ALA ARG GLY ARG THR ARG TYR THR PRO SEQRES 14 B 177 LEU LYS ARG TRP ALA LEU THR GLN HET 2AM A 201 35 HET CL A 202 1 HET 2AM B 201 35 HETNAM 2AM ADENOSINE-2'-MONOPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 2AM 2(C10 H14 N5 O7 P) FORMUL 4 CL CL 1- FORMUL 6 HOH *63(H2 O) HELIX 1 AA1 PRO A 14 PHE A 29 1 16 HELIX 2 AA2 PRO A 30 GLY A 34 5 5 HELIX 3 AA3 ALA A 38 LEU A 42 5 5 HELIX 4 AA4 SER A 53 ARG A 66 1 14 HELIX 5 AA5 PRO A 96 SER A 113 1 18 HELIX 6 AA6 PRO B 14 PHE B 29 1 16 HELIX 7 AA7 PRO B 30 GLY B 34 5 5 HELIX 8 AA8 ALA B 38 LEU B 42 5 5 HELIX 9 AA9 SER B 53 GLY B 65 1 13 HELIX 10 AB1 PRO B 96 ALA B 111 1 16 HELIX 11 AB2 ARG B 112 GLY B 114 5 3 SHEET 1 AA1 4 LEU A 44 VAL A 52 0 SHEET 2 AA1 4 GLN A 5 ILE A 11 -1 N PHE A 9 O LEU A 46 SHEET 3 AA1 4 GLU A 151 ALA A 160 -1 O SER A 157 N ARG A 6 SHEET 4 AA1 4 ARG A 163 ALA A 173 -1 O ARG A 165 N SER A 158 SHEET 1 AA2 4 ARG A 35 PRO A 36 0 SHEET 2 AA2 4 ILE A 126 ARG A 130 -1 O ARG A 130 N ARG A 35 SHEET 3 AA2 4 VAL A 87 GLY A 91 -1 N LEU A 90 O ILE A 126 SHEET 4 AA2 4 ASP A 78 TRP A 82 -1 N ASP A 78 O GLY A 91 SHEET 1 AA3 2 PHE A 72 THR A 75 0 SHEET 2 AA3 2 SER A 146 VAL A 149 -1 O VAL A 149 N PHE A 72 SHEET 1 AA4 4 LEU B 44 VAL B 52 0 SHEET 2 AA4 4 GLN B 5 ILE B 11 -1 N GLN B 5 O VAL B 52 SHEET 3 AA4 4 GLU B 151 ALA B 160 -1 O SER B 157 N ARG B 6 SHEET 4 AA4 4 ARG B 163 ALA B 173 -1 O LYS B 170 N LEU B 154 SHEET 1 AA5 4 ARG B 35 PRO B 36 0 SHEET 2 AA5 4 HIS B 125 ARG B 130 -1 O ARG B 130 N ARG B 35 SHEET 3 AA5 4 VAL B 87 GLY B 91 -1 N VAL B 88 O LEU B 128 SHEET 4 AA5 4 ASP B 78 TRP B 82 -1 N TRP B 82 O VAL B 87 SHEET 1 AA6 2 PHE B 72 THR B 75 0 SHEET 2 AA6 2 SER B 146 VAL B 149 -1 O TYR B 147 N LEU B 74 SITE 1 AC1 10 HIS A 43 THR A 45 PHE A 48 HIS A 125 SITE 2 AC1 10 THR A 127 ARG A 130 TYR A 166 HOH A 323 SITE 3 AC1 10 ARG B 86 ASP B 131 SITE 1 AC2 2 ALA A 38 ASN A 41 SITE 1 AC3 8 ARG B 6 HIS B 43 THR B 45 PHE B 48 SITE 2 AC3 8 HIS B 125 THR B 127 ARG B 130 TYR B 166 CRYST1 108.070 108.070 72.640 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013767 0.00000