HEADER OXIDOREDUCTASE 27-JUN-16 5LDU TITLE RECOMBINANT HIGH-REDOX POTENTIAL LACCASE FROM BASIDIOMYCETE TRAMETES TITLE 2 HIRSUTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES HIRSUTA; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5327; SOURCE 5 EXPRESSION_SYSTEM: PENICILLIUM CANESCENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5083; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: VKPM F-178; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: INTEGRATIVE VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBGLAC KEYWDS OXIDOREDUCTASE, ENZYME, LACCASE, BASIDIOMYCETE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.POLYAKOV,T.V.FEDOROVA,D.S.LOGINOV,O.S.SAVINOVA,V.S.LAMZIN, AUTHOR 2 O.V.KOROLEVA REVDAT 4 10-JAN-24 5LDU 1 HETSYN LINK REVDAT 3 29-JUL-20 5LDU 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 17-JUL-19 5LDU 1 REMARK REVDAT 1 10-AUG-16 5LDU 0 JRNL AUTH T.V.FEDOROVA,K.M.POLYAKOV,D.S.LOGINOV,O.S.SAVINOVA, JRNL AUTH 2 E.A.VAVILOVA,A.M.CHULKIN,V.S.LAMZIN,O.V.KOROLEVA JRNL TITL FIRST STRUCTURE OF RECOMBINANT HIGH-REDOX POTENTIAL LACCASE JRNL TITL 2 FROM BASIDIOMYCETE TRAMETES HIRSUTA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 33137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2279 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4098 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5614 ; 1.897 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 6.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;36.581 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;12.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.290 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3208 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 1.543 ; 2.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2492 ; 2.138 ; 3.284 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2103 ; 2.455 ; 2.367 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6138 ; 4.341 ;19.285 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 1.020 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.09 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FPX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 6.0 AND 15% PEG 8,000., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.64000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.73000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.91000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 316 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG C 1 O5 NAG C 2 2.05 REMARK 500 O4 NAG B 1 O5 NAG B 2 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 423 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 131.59 70.32 REMARK 500 ASP A 101 17.04 -142.05 REMARK 500 SER A 113 -133.02 39.33 REMARK 500 LEU A 164 38.65 -89.66 REMARK 500 ASN A 172 51.19 39.78 REMARK 500 ASP A 206 -76.22 -164.47 REMARK 500 ASP A 224 -114.14 50.76 REMARK 500 ALA A 240 126.39 -39.48 REMARK 500 ALA A 241 -10.34 82.67 REMARK 500 PHE A 270 14.46 -140.01 REMARK 500 SER A 310 124.81 -38.14 REMARK 500 ASP A 418 -68.57 -99.18 REMARK 500 ARG A 423 -168.40 -161.03 REMARK 500 ASN A 478 68.25 -116.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 398 NE2 169.6 REMARK 620 3 HIS A 398 NE2 178.2 9.6 REMARK 620 4 HOH A 780 O 93.0 81.9 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 131.1 REMARK 620 3 HIS A 454 NE2 115.1 107.2 REMARK 620 4 HOH A 689 O 124.0 91.2 71.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 517 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 103 O REMARK 620 2 SER A 225 O 99.4 REMARK 620 3 HOH A 617 O 82.2 99.8 REMARK 620 4 HOH A 801 O 163.1 96.0 101.9 REMARK 620 5 HOH A 805 O 79.5 88.2 161.1 94.2 REMARK 620 6 HOH A 849 O 99.5 156.9 95.9 64.0 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 400 NE2 107.1 REMARK 620 3 HIS A 452 NE2 109.7 112.2 REMARK 620 4 HOH A 689 O 97.3 124.9 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 395 ND1 REMARK 620 2 CYS A 453 SG 128.2 REMARK 620 3 HIS A 458 ND1 99.9 131.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FPX RELATED DB: PDB DBREF1 5LDU A 1 499 UNP A0A0A7M685_TRAHI DBREF2 5LDU A A0A0A7M685 22 520 SEQRES 1 A 499 ALA VAL GLY PRO VAL ALA ASP LEU THR ILE THR ASP ALA SEQRES 2 A 499 ALA VAL SER PRO ASP GLY PHE SER ARG GLN ALA VAL VAL SEQRES 3 A 499 VAL ASN GLY VAL THR PRO GLY PRO LEU VAL ALA GLY ASN SEQRES 4 A 499 ILE GLY ASP ARG PHE GLN LEU ASN VAL ILE ASP ASN LEU SEQRES 5 A 499 THR ASN HIS THR MET LEU LYS SER THR SER ILE HIS TRP SEQRES 6 A 499 HIS GLY PHE PHE GLN HIS GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 499 PRO ALA PHE ILE ASN GLN CYS PRO ILE SER PRO GLY HIS SEQRES 8 A 499 SER PHE LEU TYR ASP PHE GLN VAL PRO ASP GLN ALA GLY SEQRES 9 A 499 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 499 ASP GLY LEU ARG GLY PRO PHE VAL VAL TYR ASP PRO ASN SEQRES 11 A 499 ASP PRO HIS ALA SER ARG TYR ASP VAL ASP ASN ASP ASP SEQRES 12 A 499 THR VAL ILE THR LEU ALA ASP TRP TYR HIS THR ALA ALA SEQRES 13 A 499 LYS LEU GLY PRO ARG PHE PRO LEU GLY ALA ASP ALA THR SEQRES 14 A 499 LEU ILE ASN GLY LYS GLY ARG ALA PRO SER ASP THR THR SEQRES 15 A 499 ALA GLU LEU SER VAL ILE LYS VAL THR LYS GLY LYS ARG SEQRES 16 A 499 TYR ARG PHE ARG LEU VAL SER LEU SER CYS ASP PRO ASN SEQRES 17 A 499 HIS THR PHE SER ILE ASP GLY HIS ASN LEU THR ILE ILE SEQRES 18 A 499 GLU VAL ASP SER VAL ASN SER GLN PRO LEU GLU VAL ASP SEQRES 19 A 499 SER ILE GLN ILE PHE ALA ALA GLN ARG TYR SER PHE VAL SEQRES 20 A 499 LEU ASP ALA ASN GLN ALA VAL ASP ASN TYR TRP ILE ARG SEQRES 21 A 499 ALA ASN PRO ASN PHE GLY ASN VAL GLY PHE ASP GLY GLY SEQRES 22 A 499 ILE ASN SER ALA ILE LEU ARG TYR ASP GLY ALA PRO ALA SEQRES 23 A 499 VAL GLU PRO THR THR ASN GLN THR THR SER VAL LYS PRO SEQRES 24 A 499 LEU ASN GLU VAL ASP LEU HIS PRO LEU VAL SER THR PRO SEQRES 25 A 499 VAL PRO GLY SER PRO SER SER GLY GLY VAL ASP LYS ALA SEQRES 26 A 499 ILE ASN MET ALA PHE ASN PHE ASN GLY SER ASN PHE PHE SEQRES 27 A 499 ILE ASN GLY ALA SER PHE VAL PRO PRO THR VAL PRO VAL SEQRES 28 A 499 LEU LEU GLN ILE LEU SER GLY ALA GLN THR ALA GLN ASP SEQRES 29 A 499 LEU LEU PRO SER GLY SER VAL TYR VAL LEU PRO SER ASN SEQRES 30 A 499 ALA SER ILE GLU ILE SER PHE PRO ALA THR ALA ALA ALA SEQRES 31 A 499 PRO GLY ALA PRO HIS PRO PHE HIS LEU HIS GLY HIS THR SEQRES 32 A 499 PHE ALA VAL VAL ARG SER ALA GLY SER THR VAL TYR ASN SEQRES 33 A 499 TYR ASP ASN PRO ILE PHE ARG ASP VAL VAL SER THR GLY SEQRES 34 A 499 THR PRO ALA ALA GLY ASP ASN VAL THR ILE ARG PHE ASP SEQRES 35 A 499 THR ASN ASN PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE SEQRES 36 A 499 ASP PHE HIS LEU GLU GLY GLY PHE ALA VAL VAL MET ALA SEQRES 37 A 499 GLU ASP THR PRO ASP VAL LYS ALA VAL ASN PRO VAL PRO SEQRES 38 A 499 GLN ALA TRP SER ASP LEU CYS PRO THR TYR ASP ALA LEU SEQRES 39 A 499 ASP PRO ASN ASP GLN HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET CU A 501 1 HET CU A 502 1 HET CU A 503 1 HET CU A 504 1 HET NAG A 508 14 HET NAG A 509 14 HET NAG A 515 14 HET GOL A 516 6 HET NA A 517 1 HET NA A 518 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 4 CU 4(CU 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 NA 2(NA 1+) FORMUL 14 HOH *273(H2 O) HELIX 1 AA1 ASN A 54 LEU A 58 5 5 HELIX 2 AA2 THR A 73 ASP A 77 5 5 HELIX 3 AA3 THR A 114 GLY A 119 5 6 HELIX 4 AA4 HIS A 133 TYR A 137 5 5 HELIX 5 AA5 ASN A 141 ASP A 143 5 3 HELIX 6 AA6 PHE A 270 ILE A 274 5 5 HELIX 7 AA7 ASN A 301 LEU A 305 5 5 HELIX 8 AA8 PRO A 350 SER A 357 1 8 HELIX 9 AA9 THR A 430 GLY A 434 5 5 HELIX 10 AB1 ILE A 455 GLY A 461 1 7 HELIX 11 AB2 ASP A 473 ASN A 478 1 6 HELIX 12 AB3 PRO A 481 ASP A 486 1 6 HELIX 13 AB4 ASP A 486 ALA A 493 1 8 HELIX 14 AB5 ASP A 495 GLN A 499 5 5 SHEET 1 AA1 4 ARG A 22 VAL A 27 0 SHEET 2 AA1 4 VAL A 5 VAL A 15 -1 N THR A 11 O VAL A 26 SHEET 3 AA1 4 ARG A 43 ASP A 50 1 O ASN A 47 N LEU A 8 SHEET 4 AA1 4 SER A 92 GLN A 98 -1 O PHE A 97 N PHE A 44 SHEET 1 AA2 4 VAL A 36 ASN A 39 0 SHEET 2 AA2 4 ARG A 121 TYR A 127 1 O TYR A 127 N GLY A 38 SHEET 3 AA2 4 GLY A 104 SER A 110 -1 N PHE A 106 O PHE A 124 SHEET 4 AA2 4 ILE A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 AA3 6 ALA A 168 ILE A 171 0 SHEET 2 AA3 6 VAL A 145 TRP A 151 -1 N ALA A 149 O LEU A 170 SHEET 3 AA3 6 ARG A 195 SER A 202 1 O ARG A 199 N ILE A 146 SHEET 4 AA3 6 ARG A 243 ASP A 249 -1 O LEU A 248 N TYR A 196 SHEET 5 AA3 6 LEU A 218 VAL A 223 -1 N ILE A 221 O SER A 245 SHEET 6 AA3 6 VAL A 226 VAL A 233 -1 O VAL A 233 N LEU A 218 SHEET 1 AA4 5 VAL A 187 VAL A 190 0 SHEET 2 AA4 5 SER A 276 TYR A 281 1 O ILE A 278 N ILE A 188 SHEET 3 AA4 5 ASN A 256 PRO A 263 -1 N TYR A 257 O LEU A 279 SHEET 4 AA4 5 HIS A 209 ILE A 213 -1 N SER A 212 O ARG A 260 SHEET 5 AA4 5 ILE A 236 ILE A 238 -1 O ILE A 236 N PHE A 211 SHEET 1 AA5 5 LYS A 324 ASN A 327 0 SHEET 2 AA5 5 SER A 379 PRO A 385 1 O GLU A 381 N ILE A 326 SHEET 3 AA5 5 ASN A 436 ASP A 442 -1 O ILE A 439 N ILE A 382 SHEET 4 AA5 5 PHE A 404 ARG A 408 -1 N ALA A 405 O ARG A 440 SHEET 5 AA5 5 PHE A 422 ARG A 423 -1 O ARG A 423 N PHE A 404 SHEET 1 AA6 2 PHE A 330 PHE A 332 0 SHEET 2 AA6 2 PHE A 337 ILE A 339 -1 O PHE A 338 N ASN A 331 SHEET 1 AA7 5 VAL A 371 LEU A 374 0 SHEET 2 AA7 5 ALA A 464 GLU A 469 1 O VAL A 466 N TYR A 372 SHEET 3 AA7 5 GLY A 447 CYS A 453 -1 N TRP A 449 O MET A 467 SHEET 4 AA7 5 PRO A 396 LEU A 399 -1 N HIS A 398 O HIS A 452 SHEET 5 AA7 5 VAL A 425 SER A 427 -1 O VAL A 426 N PHE A 397 SSBOND 1 CYS A 85 CYS A 488 1555 1555 2.06 SSBOND 2 CYS A 117 CYS A 205 1555 1555 2.00 LINK ND2 ASN A 54 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 217 C1 NAG A 508 1555 1555 1.43 LINK ND2 ASN A 333 C1 NAG A 509 1555 1555 1.44 LINK ND2 ASN A 377 C1 NAG A 515 1555 1555 1.45 LINK ND2 ASN A 436 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.43 LINK NE2 HIS A 64 CU CU A 503 1555 1555 1.94 LINK ND1 HIS A 66 CU CU A 502 1555 1555 1.99 LINK O ALA A 103 NA NA A 517 1555 1555 2.19 LINK NE2 HIS A 109 CU CU A 502 1555 1555 2.07 LINK NE2 HIS A 111 CU CU A 501 1555 1555 2.01 LINK O SER A 225 NA NA A 517 1555 1555 2.12 LINK OD1 ASN A 292 NA NA A 518 1555 1555 2.33 LINK ND1 HIS A 395 CU CU A 504 1555 1555 2.04 LINK NE2AHIS A 398 CU CU A 503 1555 1555 2.15 LINK NE2BHIS A 398 CU CU A 503 1555 1555 1.90 LINK NE2 HIS A 400 CU CU A 501 1555 1555 1.99 LINK NE2 HIS A 452 CU CU A 501 1555 1555 2.03 LINK SG CYS A 453 CU CU A 504 1555 1555 2.26 LINK NE2 HIS A 454 CU CU A 502 1555 1555 2.01 LINK ND1 HIS A 458 CU CU A 504 1555 1555 1.99 LINK CU CU A 501 O HOH A 689 1555 1555 1.98 LINK CU CU A 502 O HOH A 689 1555 1555 2.54 LINK CU CU A 503 O HOH A 780 1555 1555 2.34 LINK NA NA A 517 O HOH A 617 1555 1555 2.60 LINK NA NA A 517 O HOH A 801 1555 1555 2.75 LINK NA NA A 517 O HOH A 805 1555 1555 2.36 LINK NA NA A 517 O HOH A 849 1555 1555 2.29 CISPEP 1 GLY A 3 PRO A 4 0 11.07 CISPEP 2 THR A 31 PRO A 32 0 -6.92 CISPEP 3 LEU A 366 PRO A 367 0 6.35 CISPEP 4 ALA A 393 PRO A 394 0 -1.83 CRYST1 160.650 160.650 53.460 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006225 0.003594 0.000000 0.00000 SCALE2 0.000000 0.007188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018706 0.00000