HEADER TRANSFERASE 30-JUN-16 5LF9 TITLE CRYSTAL STRUCTURE OF HUMAN NUDT22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 22; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUDIX MOTIF 22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT22, PP11246; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 22, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,P.SIEJKA,S.MATHEA,L.SHRESTHA,T.KROJER,V.SRIKANNATHASAN, AUTHOR 2 J.M.ELKINS,N.BURGESS-BROWN,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 C.BOUNTRA,K.HUBER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 08-MAY-24 5LF9 1 REMARK REVDAT 1 02-AUG-17 5LF9 0 JRNL AUTH C.TALLANT,P.SIEJKA,S.MATHEA,L.SHRESTHA,T.KROJER, JRNL AUTH 2 V.SRIKANNATHASAN,J.M.ELKINS,N.BURGESS-BROWN,F.VON DELFT, JRNL AUTH 3 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,K.HUBER JRNL TITL CRYSTAL STRUCTURE OF HUMAN NUDT22 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2378 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2253 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2121 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3080 ; 1.656 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4885 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.703 ;23.960 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;13.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2610 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 513 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1148 ; 2.580 ; 2.360 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1147 ; 2.511 ; 2.357 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1439 ; 3.062 ; 3.529 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1440 ; 3.065 ; 3.532 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1105 ; 3.192 ; 2.741 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1106 ; 3.191 ; 2.743 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1641 ; 3.439 ; 3.979 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2407 ; 3.956 ;29.441 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2388 ; 3.948 ;29.273 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4374 ; 3.058 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 28 ;16.570 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4380 ; 7.937 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.02400 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.00500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% HIGHPEG, 0.1 M HEPES PH 7.5, 0.1 M REMARK 280 NAKPO, 10% EDO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.89150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.05700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.89150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.05700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 CYS A 164 REMARK 465 PRO A 165 REMARK 465 GLY A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 PRO A 169 REMARK 465 GLN A 170 REMARK 465 THR A 291 REMARK 465 GLY A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 LEU A 295 REMARK 465 GLY A 296 REMARK 465 SER A 297 REMARK 465 PRO A 298 REMARK 465 ALA A 299 REMARK 465 LEU A 300 REMARK 465 LEU A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 LEU A 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 74 NE CZ NH1 NH2 REMARK 470 GLN A 142 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 172 O HOH A 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 482 O HOH A 491 4565 0.87 REMARK 500 O LEU A 174 O HOH A 486 3555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 256 CD GLU A 256 OE1 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 159 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 85 -159.96 -139.81 REMARK 500 THR A 93 -81.12 -136.17 REMARK 500 ASP A 132 46.78 78.64 REMARK 500 GLN A 160 123.08 164.72 REMARK 500 ALA A 161 96.09 -175.44 REMARK 500 SER A 289 76.45 53.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LF9 A 1 304 UNP Q9BRQ3 NUD22_HUMAN 1 303 SEQADV 5LF9 SER A 0 UNP Q9BRQ3 EXPRESSION TAG SEQADV 5LF9 ARG A 261 UNP Q9BRQ3 GLN 260 VARIANT SEQADV 5LF9 PRO A 264 UNP Q9BRQ3 LEU 263 VARIANT SEQRES 1 A 304 SER MET ASP PRO GLU VAL THR LEU LEU LEU GLN CYS PRO SEQRES 2 A 304 GLY GLY GLY LEU PRO GLN GLU GLN ILE GLN ALA GLU LEU SEQRES 3 A 304 SER PRO ALA HIS ASP ARG ARG PRO LEU PRO GLY GLY ASP SEQRES 4 A 304 GLU ALA ILE THR ALA ILE TRP GLU THR ARG LEU LYS ALA SEQRES 5 A 304 GLN PRO TRP LEU PHE ASP ALA PRO LYS PHE ARG LEU HIS SEQRES 6 A 304 SER ALA THR LEU ALA PRO ILE GLY SER ARG GLY PRO GLN SEQRES 7 A 304 LEU LEU LEU ARG LEU GLY LEU THR SER TYR ARG ASP PHE SEQRES 8 A 304 LEU GLY THR ASN TRP SER SER SER ALA ALA TRP LEU ARG SEQRES 9 A 304 GLN GLN GLY ALA THR ASP TRP GLY ASP THR GLN ALA TYR SEQRES 10 A 304 LEU ALA ASP PRO LEU GLY VAL GLY ALA ALA LEU ALA THR SEQRES 11 A 304 ALA ASP ASP PHE LEU VAL PHE LEU ARG ARG SER ARG GLN SEQRES 12 A 304 VAL ALA GLU ALA PRO GLY LEU VAL ASP VAL PRO GLY GLY SEQRES 13 A 304 HIS PRO GLU PRO GLN ALA LEU CYS PRO GLY GLY SER PRO SEQRES 14 A 304 GLN HIS GLN ASP LEU ALA GLY GLN LEU VAL VAL HIS GLU SEQRES 15 A 304 LEU PHE SER SER VAL LEU GLN GLU ILE CYS ASP GLU VAL SEQRES 16 A 304 ASN LEU PRO LEU LEU THR LEU SER GLN PRO LEU LEU LEU SEQRES 17 A 304 GLY ILE ALA ARG ASN GLU THR SER ALA GLY ARG ALA SER SEQRES 18 A 304 ALA GLU PHE TYR VAL GLN CYS SER LEU THR SER GLU GLN SEQRES 19 A 304 VAL ARG LYS HIS TYR LEU SER GLY GLY PRO GLU ALA HIS SEQRES 20 A 304 GLU SER THR GLY ILE PHE PHE VAL GLU THR GLN ASN VAL SEQRES 21 A 304 ARG ARG LEU PRO GLU THR GLU MET TRP ALA GLU LEU CYS SEQRES 22 A 304 PRO SER ALA LYS GLY ALA ILE ILE LEU TYR ASN ARG VAL SEQRES 23 A 304 GLN GLY SER PRO THR GLY ALA ALA LEU GLY SER PRO ALA SEQRES 24 A 304 LEU LEU PRO PRO LEU FORMUL 2 HOH *91(H2 O) HELIX 1 AA1 PRO A 17 GLU A 19 5 3 HELIX 2 AA2 PRO A 27 ASP A 30 5 4 HELIX 3 AA3 ASP A 38 GLN A 52 1 15 HELIX 4 AA4 TYR A 87 THR A 93 1 7 HELIX 5 AA5 SER A 98 GLY A 111 1 14 HELIX 6 AA6 LEU A 174 ASN A 196 1 23 HELIX 7 AA7 PRO A 198 LEU A 202 5 5 HELIX 8 AA8 THR A 215 ALA A 217 5 3 HELIX 9 AA9 THR A 231 GLY A 242 1 12 HELIX 10 AB1 GLY A 243 HIS A 247 5 5 HELIX 11 AB2 THR A 257 ARG A 261 1 5 HELIX 12 AB3 ARG A 262 THR A 266 5 5 HELIX 13 AB4 MET A 268 LEU A 272 5 5 HELIX 14 AB5 CYS A 273 GLN A 287 1 15 SHEET 1 AA1 5 VAL A 5 GLN A 10 0 SHEET 2 AA1 5 LEU A 206 ASN A 213 -1 O ARG A 212 N THR A 6 SHEET 3 AA1 5 ALA A 220 GLN A 227 -1 O GLU A 223 N GLY A 209 SHEET 4 AA1 5 GLY A 122 ALA A 128 1 N ALA A 126 O PHE A 224 SHEET 5 AA1 5 GLY A 154 GLY A 155 -1 O GLY A 155 N VAL A 123 SHEET 1 AA2 3 ILE A 21 LEU A 25 0 SHEET 2 AA2 3 LEU A 78 SER A 86 1 O LEU A 82 N GLU A 24 SHEET 3 AA2 3 PRO A 59 LEU A 68 -1 N SER A 65 O ARG A 81 SHEET 1 AA3 3 VAL A 150 ASP A 151 0 SHEET 2 AA3 3 PHE A 133 ARG A 138 -1 N LEU A 137 O ASP A 151 SHEET 3 AA3 3 GLY A 251 GLU A 256 -1 O PHE A 253 N PHE A 136 CRYST1 49.810 52.114 101.783 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009825 0.00000