HEADER IMMUNE SYSTEM 01-JUL-16 5LFI TITLE LACTOCOCCIN A IMMUNITY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOCOCCIN-A IMMUNITY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; SOURCE 3 ORGANISM_TAXID: 1360; SOURCE 4 GENE: LCIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOUR-HELIX BUNDLE, IMMUNITY PROTEIN, BACTERIOCIN RECEPTOR, IMMUNE KEYWDS 2 SYSTEM EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR C.PERSSON,V.FUOCHI,A.PEDERSEN,B.G.KARLSSON,J.NISSEN-MEYER, AUTHOR 2 P.E.KRISTIANSEN,C.OPPEGARD REVDAT 4 14-JUN-23 5LFI 1 REMARK REVDAT 3 08-MAY-19 5LFI 1 REMARK REVDAT 2 21-DEC-16 5LFI 1 JRNL REVDAT 1 16-NOV-16 5LFI 0 JRNL AUTH P.E.KRISTIANSEN,C.PERSSON,V.FUOCHI,A.PEDERSEN,G.B.KARLSSON, JRNL AUTH 2 J.NISSEN-MEYER,C.OPPEGARD JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE AND MUTATIONAL ANALYSIS JRNL TITL 2 OF THE LACTOCOCCIN A IMMUNITY PROTEIN. JRNL REF BIOCHEMISTRY V. 55 6250 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27808503 JRNL DOI 10.1021/ACS.BIOCHEM.6B00848 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000250. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.4 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 LACTOCOCCIN A IMMUNITY PROTEIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HN(COCA)CB; 3D REMARK 210 HN(CA)CO; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 78.10 -109.23 REMARK 500 1 HIS A 9 78.66 60.66 REMARK 500 1 ARG A 17 -154.48 -88.51 REMARK 500 1 LYS A 21 -36.81 178.49 REMARK 500 1 LYS A 23 -175.03 177.67 REMARK 500 1 GLU A 62 31.19 -80.63 REMARK 500 1 TYR A 63 148.32 81.82 REMARK 500 1 SER A 97 97.22 -166.99 REMARK 500 1 SER A 98 -57.13 -175.25 REMARK 500 1 LYS A 99 -50.79 -158.84 REMARK 500 1 ASN A 102 -86.75 38.29 REMARK 500 1 ASN A 104 -61.51 -171.27 REMARK 500 1 LEU A 105 -20.45 175.56 REMARK 500 1 MET A 111 155.91 69.45 REMARK 500 1 SER A 112 -73.72 72.39 REMARK 500 2 SER A 4 -168.16 -173.65 REMARK 500 2 HIS A 6 43.04 -83.02 REMARK 500 2 HIS A 10 52.76 -90.22 REMARK 500 2 SER A 11 25.72 -166.52 REMARK 500 2 GLU A 15 -70.32 -85.20 REMARK 500 2 ARG A 17 158.80 68.90 REMARK 500 2 TYR A 63 162.81 177.23 REMARK 500 2 LYS A 99 78.25 58.31 REMARK 500 2 ALA A 100 -66.13 -143.97 REMARK 500 2 LYS A 103 41.47 -161.45 REMARK 500 2 ASN A 104 91.54 58.11 REMARK 500 2 LEU A 105 87.92 -67.63 REMARK 500 2 LEU A 109 139.04 69.60 REMARK 500 2 MET A 111 31.55 -89.45 REMARK 500 2 ARG A 115 127.84 -177.31 REMARK 500 2 LEU A 116 -80.38 -78.72 REMARK 500 3 HIS A 6 -154.41 -146.91 REMARK 500 3 SER A 12 85.93 -63.78 REMARK 500 3 ILE A 14 121.46 73.23 REMARK 500 3 GLU A 15 -51.67 -157.03 REMARK 500 3 ARG A 17 75.24 65.36 REMARK 500 3 GLN A 24 108.02 58.53 REMARK 500 3 ASP A 42 97.83 -65.30 REMARK 500 3 SER A 101 -64.26 -167.83 REMARK 500 3 LYS A 103 -37.24 73.85 REMARK 500 3 LEU A 105 87.82 -158.80 REMARK 500 3 MET A 111 35.64 -163.90 REMARK 500 4 HIS A 10 80.77 57.24 REMARK 500 4 SER A 12 -60.66 78.65 REMARK 500 4 LYS A 22 100.90 60.53 REMARK 500 4 HIS A 86 -6.65 73.87 REMARK 500 4 ASN A 104 108.16 69.24 REMARK 500 4 SER A 112 -67.81 -159.32 REMARK 500 4 TRP A 113 -84.33 60.41 REMARK 500 4 LEU A 116 -58.75 -162.71 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34018 RELATED DB: BMRB DBREF 5LFI A 20 117 UNP P0A3M7 LCIA_LACLL 1 98 SEQADV 5LFI MET A 1 UNP P0A3M7 INITIATING METHIONINE SEQADV 5LFI SER A 2 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI GLY A 3 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI SER A 4 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 5 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 6 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 7 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 8 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 9 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI HIS A 10 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI SER A 11 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI SER A 12 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI GLY A 13 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI ILE A 14 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI GLU A 15 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI GLY A 16 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI ARG A 17 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI GLY A 18 UNP P0A3M7 EXPRESSION TAG SEQADV 5LFI ARG A 19 UNP P0A3M7 EXPRESSION TAG SEQRES 1 A 117 MET SER GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 117 ILE GLU GLY ARG GLY ARG MET LYS LYS LYS GLN ILE GLU SEQRES 3 A 117 PHE GLU ASN GLU LEU ARG SER MET LEU ALA THR ALA LEU SEQRES 4 A 117 GLU LYS ASP ILE SER GLN GLU GLU ARG ASN ALA LEU ASN SEQRES 5 A 117 ILE ALA GLU LYS ALA LEU ASP ASN SER GLU TYR LEU PRO SEQRES 6 A 117 LYS ILE ILE LEU ASN LEU ARG LYS ALA LEU THR PRO LEU SEQRES 7 A 117 ALA ILE ASN ARG THR LEU ASN HIS ASP LEU SER GLU LEU SEQRES 8 A 117 TYR LYS PHE ILE THR SER SER LYS ALA SER ASN LYS ASN SEQRES 9 A 117 LEU GLY GLY GLY LEU ILE MET SER TRP GLY ARG LEU PHE HELIX 1 AA1 GLN A 24 LYS A 41 1 18 HELIX 2 AA2 SER A 44 ASP A 59 1 16 HELIX 3 AA3 TYR A 63 ASN A 81 1 19 HELIX 4 AA4 LEU A 88 ILE A 95 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1