HEADER IMMUNE SYSTEM 06-JUL-16 5LG9 TITLE STRUCTURE OF PFIMP2 (IMMUNE MAPPED PROTEIN 2 FROM PLASMODIUM TITLE 2 FALCIPARUM) - AN ANTIGENIC PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_0730400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: E.COLI EXPRESSION VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-ZB KEYWDS IMMUNE MAPPED PROTEIN, APICOMPLEXAN, IMMUNOGENIC, ANTIGEN, IMMUNE KEYWDS 2 SYSTEM EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.V.BENJAMIN,S.J.MATTHEWS REVDAT 3 08-MAY-19 5LG9 1 REMARK REVDAT 2 14-DEC-16 5LG9 1 JRNL REVDAT 1 07-DEC-16 5LG9 0 JRNL AUTH Y.JIA,S.BENJAMIN,Q.LIU,Y.XU,S.K.DOGGA,J.LIU,S.MATTHEWS, JRNL AUTH 2 D.SOLDATI-FAVRE JRNL TITL TOXOPLASMA GONDII IMMUNE MAPPED PROTEIN 1 IS ANCHORED TO THE JRNL TITL 2 INNER LEAFLET OF THE PLASMA MEMBRANE AND ADOPTS A NOVEL JRNL TITL 3 PROTEIN FOLD. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 208 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27888074 JRNL DOI 10.1016/J.BBAPAP.2016.11.010 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BENJAMIN,F.WILLIAMS,L.KERRY,S.MATTHEWS REMARK 1 TITL NMR ASSIGNMENT OF THE IMMUNE MAPPED PROTEIN 1 (IMP1) REMARK 1 TITL 2 HOMOLOGUE FROM PLASMODIUM FALCIPARUM. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 9 393 2015 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 25947350 REMARK 1 DOI 10.1007/S12104-015-9616-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, ARIA REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000672. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-13C; U-15N] PFIMP2, 50 REMARK 210 MM HEPES, 150 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 68 HG CYS A 71 1.52 REMARK 500 O PHE A 90 H PHE A 94 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 81 54.30 73.15 REMARK 500 1 HIS A 89 -52.56 159.90 REMARK 500 1 PRO A 95 20.92 -71.78 REMARK 500 1 LYS A 130 -36.72 -36.95 REMARK 500 1 SER A 133 -6.76 -56.85 REMARK 500 2 ASP A 62 117.91 -161.23 REMARK 500 2 LYS A 81 58.45 72.32 REMARK 500 2 HIS A 89 -46.39 157.49 REMARK 500 2 PRO A 95 25.44 -76.32 REMARK 500 2 ASP A 121 67.09 -114.02 REMARK 500 2 LYS A 130 -76.68 53.67 REMARK 500 3 ASN A 58 32.78 74.47 REMARK 500 3 LYS A 81 55.54 74.98 REMARK 500 3 HIS A 89 -49.27 159.06 REMARK 500 3 LYS A 130 -76.79 52.11 REMARK 500 4 HIS A 89 -47.27 165.89 REMARK 500 4 PRO A 95 22.35 -69.51 REMARK 500 4 VAL A 118 107.70 -55.66 REMARK 500 4 ASP A 121 57.75 -114.64 REMARK 500 4 LYS A 130 -75.87 32.60 REMARK 500 4 SER A 133 -7.33 -55.55 REMARK 500 5 LEU A 55 -62.49 -92.62 REMARK 500 5 LYS A 81 52.34 73.73 REMARK 500 5 HIS A 89 -61.40 164.01 REMARK 500 5 LYS A 130 -73.21 48.73 REMARK 500 6 LEU A 55 -63.47 -97.00 REMARK 500 6 HIS A 89 -63.96 166.93 REMARK 500 6 SER A 133 -6.31 -56.74 REMARK 500 7 ASN A 58 42.42 70.71 REMARK 500 7 LYS A 81 56.37 73.90 REMARK 500 7 HIS A 89 -70.16 164.43 REMARK 500 7 PRO A 95 21.44 -70.38 REMARK 500 7 LYS A 130 -71.88 47.46 REMARK 500 7 SER A 133 -8.18 -56.69 REMARK 500 8 GLU A 4 -52.90 72.83 REMARK 500 8 ASP A 62 110.67 -161.72 REMARK 500 8 LYS A 81 64.49 68.81 REMARK 500 8 HIS A 89 -53.48 162.46 REMARK 500 8 LYS A 130 -66.65 48.73 REMARK 500 9 LYS A 81 58.64 76.55 REMARK 500 9 HIS A 89 -40.94 163.67 REMARK 500 9 ASP A 121 75.29 -117.44 REMARK 500 9 LYS A 130 -60.23 51.05 REMARK 500 10 LEU A 55 -64.90 -91.66 REMARK 500 10 HIS A 89 -48.03 159.03 REMARK 500 10 LYS A 130 54.36 25.99 REMARK 500 11 ASP A 62 103.11 -163.74 REMARK 500 11 LYS A 81 60.65 71.12 REMARK 500 11 HIS A 89 -53.77 165.98 REMARK 500 11 ASP A 121 37.85 -140.16 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34022 RELATED DB: BMRB DBREF 5LG9 A 3 158 UNP Q8IBF5 Q8IBF5_PLAF7 3 158 SEQRES 1 A 156 GLU GLU LYS GLY ALA TYR LEU VAL PHE ASP ASN ALA SER SEQRES 2 A 156 ASN GLY THR LEU PHE ILE VAL TRP LYS LYS GLU LYS VAL SEQRES 3 A 156 GLU ASN ALA LEU MET PHE ILE LYS PRO THR LYS GLU VAL SEQRES 4 A 156 PRO GLU PHE LYS PHE VAL ASN ARG ASN GLY LYS ASN GLU SEQRES 5 A 156 LEU ILE ARG ASN LEU GLN SER ASP LYS LYS LEU PHE TYR SEQRES 6 A 156 SER GLY ILE CYS GLN PHE VAL LYS GLU ALA LYS ASP ILE SEQRES 7 A 156 LYS GLY LYS LEU THR LEU LEU GLN HIS PHE ASP SER SER SEQRES 8 A 156 PHE PRO ILE LYS VAL ASP LEU TYR PHE LEU LYS GLY SER SEQRES 9 A 156 LYS VAL MET PRO LEU ASN THR GLY GLU PRO PHE VAL VAL SEQRES 10 A 156 GLN ASP ILE ASP ALA MET SER VAL LEU PRO LYS GLY SER SEQRES 11 A 156 SER SER LEU LYS VAL LYS THR MET ALA LYS ASP MET PHE SEQRES 12 A 156 VAL SER ARG GLY ASN THR GLU GLY ALA SER ILE SER PHE HELIX 1 AA1 ASN A 13 GLY A 17 5 5 HELIX 2 AA2 PRO A 42 ASN A 48 1 7 HELIX 3 AA3 ASN A 58 ASP A 62 5 5 HELIX 4 AA4 LYS A 63 LYS A 81 1 19 HELIX 5 AA5 HIS A 89 SER A 93 5 5 HELIX 6 AA6 GLY A 131 LEU A 135 5 5 HELIX 7 AA7 ALA A 141 GLY A 153 1 13 SHEET 1 AA1 5 THR A 18 LYS A 24 0 SHEET 2 AA1 5 GLY A 6 ASP A 12 -1 N VAL A 10 O PHE A 20 SHEET 3 AA1 5 MET A 33 LYS A 36 -1 O MET A 33 N LEU A 9 SHEET 4 AA1 5 LYS A 83 LEU A 86 -1 O THR A 85 N PHE A 34 SHEET 5 AA1 5 PHE A 117 VAL A 118 -1 O PHE A 117 N LEU A 84 SHEET 1 AA2 4 LYS A 107 PRO A 110 0 SHEET 2 AA2 4 VAL A 98 LYS A 104 -1 N PHE A 102 O MET A 109 SHEET 3 AA2 4 ALA A 124 PRO A 129 -1 O ALA A 124 N LEU A 103 SHEET 4 AA2 4 SER A 155 SER A 157 -1 O ILE A 156 N MET A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1