HEADER CELL ADHESION 06-JUL-16 5LGD TITLE THE CIDRA DOMAIN FROM MCVAR1 PFEMP1 BOUND TO CD36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET GLYCOPROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FATTY ACID TRANSLOCASE,FAT,GLYCOPROTEIN IIIB,GPIIIB, COMPND 5 LEUKOCYTE DIFFERENTIATION ANTIGEN CD36,PAS IV,PAS-4,PLATELET COLLAGEN COMPND 6 RECEPTOR,PLATELET GLYCOPROTEIN IV,GPIV,THROMBOSPONDIN RECEPTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PFEMP1 VARIANT 1 OF STRAIN MC; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD36, GP3B, GP4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 11 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 12 ORGANISM_TAXID: 5833; SOURCE 13 GENE: MCVAR-1 PFEMP1; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PLASMODIUM FALCIPARUM CYTOADHESION SCAVENGER RECEPTOR MALARIA, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.L.HSIEH,M.K.HIGGINS REVDAT 5 10-JAN-24 5LGD 1 HETSYN REVDAT 4 29-JUL-20 5LGD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 16-OCT-19 5LGD 1 REMARK REVDAT 2 05-OCT-16 5LGD 1 JRNL REVDAT 1 31-AUG-16 5LGD 0 JRNL AUTH F.L.HSIEH,L.TURNER,J.R.BOLLA,C.V.ROBINSON,T.LAVSTSEN, JRNL AUTH 2 M.K.HIGGINS JRNL TITL THE STRUCTURAL BASIS FOR CD36 BINDING BY THE MALARIA JRNL TITL 2 PARASITE. JRNL REF NAT COMMUN V. 7 12837 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27667267 JRNL DOI 10.1038/NCOMMS12837 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2057 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2974 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2794 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2847 REMARK 3 BIN R VALUE (WORKING SET) : 0.2781 REMARK 3 BIN FREE R VALUE : 0.3099 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 233 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.71160 REMARK 3 B22 (A**2) : -2.36340 REMARK 3 B33 (A**2) : -1.34820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.19130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.374 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.209 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.179 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.212 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4835 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6546 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1765 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 130 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 673 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4835 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 655 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5659 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.30 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -41.7774 -27.4495 25.0785 REMARK 3 T TENSOR REMARK 3 T11: -0.0753 T22: -0.0657 REMARK 3 T33: 0.0157 T12: -0.0046 REMARK 3 T13: -0.0206 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.3651 L22: 0.5309 REMARK 3 L33: 2.9608 L12: -0.4774 REMARK 3 L13: 1.0137 L23: -0.3885 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.2799 S13: 0.0978 REMARK 3 S21: -0.1161 S22: -0.1293 S23: -0.1268 REMARK 3 S31: -0.1032 S32: 0.1425 S33: 0.0886 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -49.1411 -40.6151 76.2292 REMARK 3 T TENSOR REMARK 3 T11: -0.2373 T22: 0.2305 REMARK 3 T33: 0.0188 T12: -0.1073 REMARK 3 T13: -0.0461 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: 0.9468 L22: 0.5021 REMARK 3 L33: 5.4330 L12: 0.0289 REMARK 3 L13: 1.2123 L23: -0.2910 REMARK 3 S TENSOR REMARK 3 S11: 0.1706 S12: -0.5822 S13: -0.2085 REMARK 3 S21: 0.0086 S22: -0.0251 S23: 0.0527 REMARK 3 S31: 0.4250 S32: -0.9102 S33: -0.1455 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 20% (W/V) PEG6000, 0.1 M REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.91300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.36300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.91300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.36300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 ASN A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ILE A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 PHE A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 ILE A 25 REMARK 465 LEU A 26 REMARK 465 MET A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 LEU A 32 REMARK 465 LEU A 33 REMARK 465 ILE A 34 REMARK 465 THR A 435 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ILE A 438 REMARK 465 ASN A 439 REMARK 465 LEU A 440 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 LEU A 443 REMARK 465 ILE A 444 REMARK 465 GLU A 445 REMARK 465 MET A 446 REMARK 465 ILE A 447 REMARK 465 LEU A 448 REMARK 465 LEU A 449 REMARK 465 SER A 450 REMARK 465 VAL A 451 REMARK 465 GLY A 452 REMARK 465 VAL A 453 REMARK 465 VAL A 454 REMARK 465 MET A 455 REMARK 465 PHE A 456 REMARK 465 VAL A 457 REMARK 465 ALA A 458 REMARK 465 PHE A 459 REMARK 465 MET A 460 REMARK 465 ILE A 461 REMARK 465 SER A 462 REMARK 465 TYR A 463 REMARK 465 CYS A 464 REMARK 465 ALA A 465 REMARK 465 CYS A 466 REMARK 465 ARG A 467 REMARK 465 SER A 468 REMARK 465 LYS A 469 REMARK 465 THR A 470 REMARK 465 ILE A 471 REMARK 465 LYS A 472 REMARK 465 GLY B 698 REMARK 465 ILE B 699 REMARK 465 ASP B 700 REMARK 465 PHE B 701 REMARK 465 ALA B 702 REMARK 465 ALA B 703 REMARK 465 LEU B 704 REMARK 465 ALA B 705 REMARK 465 GLY B 706 REMARK 465 LEU B 707 REMARK 465 TYR B 708 REMARK 465 THR B 709 REMARK 465 LYS B 710 REMARK 465 GLY B 711 REMARK 465 PHE B 712 REMARK 465 VAL B 713 REMARK 465 ALA B 714 REMARK 465 GLU B 715 REMARK 465 PRO B 745 REMARK 465 GLN B 746 REMARK 465 GLU B 747 REMARK 465 ASP B 748 REMARK 465 ARG B 749 REMARK 465 SER B 750 REMARK 465 VAL B 751 REMARK 465 ALA B 752 REMARK 465 ARG B 753 REMARK 465 SER B 754 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 -9.78 -54.13 REMARK 500 TYR A 204 -67.48 -135.33 REMARK 500 ALA A 225 -1.81 66.54 REMARK 500 SER A 241 -144.80 53.36 REMARK 500 PRO A 255 150.50 -48.34 REMARK 500 GLU A 280 -77.80 -110.91 REMARK 500 ILE A 317 -65.47 -94.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LGD A 1 472 UNP P16671 CD36_HUMAN 1 472 DBREF 5LGD B 576 754 UNP Q25733 Q25733_PLAFA 576 754 SEQADV 5LGD SER B 626 UNP Q25733 CYS 626 CONFLICT SEQRES 1 A 472 MET GLY CYS ASP ARG ASN CYS GLY LEU ILE ALA GLY ALA SEQRES 2 A 472 VAL ILE GLY ALA VAL LEU ALA VAL PHE GLY GLY ILE LEU SEQRES 3 A 472 MET PRO VAL GLY ASP LEU LEU ILE GLN LYS THR ILE LYS SEQRES 4 A 472 LYS GLN VAL VAL LEU GLU GLU GLY THR ILE ALA PHE LYS SEQRES 5 A 472 ASN TRP VAL LYS THR GLY THR GLU VAL TYR ARG GLN PHE SEQRES 6 A 472 TRP ILE PHE ASP VAL GLN ASN PRO GLN GLU VAL MET MET SEQRES 7 A 472 ASN SER SER ASN ILE GLN VAL LYS GLN ARG GLY PRO TYR SEQRES 8 A 472 THR TYR ARG VAL ARG PHE LEU ALA LYS GLU ASN VAL THR SEQRES 9 A 472 GLN ASP ALA GLU ASP ASN THR VAL SER PHE LEU GLN PRO SEQRES 10 A 472 ASN GLY ALA ILE PHE GLU PRO SER LEU SER VAL GLY THR SEQRES 11 A 472 GLU ALA ASP ASN PHE THR VAL LEU ASN LEU ALA VAL ALA SEQRES 12 A 472 ALA ALA SER HIS ILE TYR GLN ASN GLN PHE VAL GLN MET SEQRES 13 A 472 ILE LEU ASN SER LEU ILE ASN LYS SER LYS SER SER MET SEQRES 14 A 472 PHE GLN VAL ARG THR LEU ARG GLU LEU LEU TRP GLY TYR SEQRES 15 A 472 ARG ASP PRO PHE LEU SER LEU VAL PRO TYR PRO VAL THR SEQRES 16 A 472 THR THR VAL GLY LEU PHE TYR PRO TYR ASN ASN THR ALA SEQRES 17 A 472 ASP GLY VAL TYR LYS VAL PHE ASN GLY LYS ASP ASN ILE SEQRES 18 A 472 SER LYS VAL ALA ILE ILE ASP THR TYR LYS GLY LYS ARG SEQRES 19 A 472 ASN LEU SER TYR TRP GLU SER HIS CYS ASP MET ILE ASN SEQRES 20 A 472 GLY THR ASP ALA ALA SER PHE PRO PRO PHE VAL GLU LYS SEQRES 21 A 472 SER GLN VAL LEU GLN PHE PHE SER SER ASP ILE CYS ARG SEQRES 22 A 472 SER ILE TYR ALA VAL PHE GLU SER ASP VAL ASN LEU LYS SEQRES 23 A 472 GLY ILE PRO VAL TYR ARG PHE VAL LEU PRO SER LYS ALA SEQRES 24 A 472 PHE ALA SER PRO VAL GLU ASN PRO ASP ASN TYR CYS PHE SEQRES 25 A 472 CYS THR GLU LYS ILE ILE SER LYS ASN CYS THR SER TYR SEQRES 26 A 472 GLY VAL LEU ASP ILE SER LYS CYS LYS GLU GLY ARG PRO SEQRES 27 A 472 VAL TYR ILE SER LEU PRO HIS PHE LEU TYR ALA SER PRO SEQRES 28 A 472 ASP VAL SER GLU PRO ILE ASP GLY LEU ASN PRO ASN GLU SEQRES 29 A 472 GLU GLU HIS ARG THR TYR LEU ASP ILE GLU PRO ILE THR SEQRES 30 A 472 GLY PHE THR LEU GLN PHE ALA LYS ARG LEU GLN VAL ASN SEQRES 31 A 472 LEU LEU VAL LYS PRO SER GLU LYS ILE GLN VAL LEU LYS SEQRES 32 A 472 ASN LEU LYS ARG ASN TYR ILE VAL PRO ILE LEU TRP LEU SEQRES 33 A 472 ASN GLU THR GLY THR ILE GLY ASP GLU LYS ALA ASN MET SEQRES 34 A 472 PHE ARG SER GLN VAL THR GLY LYS ILE ASN LEU LEU GLY SEQRES 35 A 472 LEU ILE GLU MET ILE LEU LEU SER VAL GLY VAL VAL MET SEQRES 36 A 472 PHE VAL ALA PHE MET ILE SER TYR CYS ALA CYS ARG SER SEQRES 37 A 472 LYS THR ILE LYS SEQRES 1 B 179 GLU ASP LYS ILE MET SER TYR ASN ALA PHE PHE TRP MET SEQRES 2 B 179 TRP VAL HIS ASP MET LEU ILE ASP SER ILE LYS TRP ARG SEQRES 3 B 179 ASP GLU HIS GLY ARG CYS ILE ASN LYS ASP LYS GLY LYS SEQRES 4 B 179 THR CYS ILE LYS GLY CYS ASN LYS LYS CYS ILE SER PHE SEQRES 5 B 179 GLN LYS TRP VAL GLU GLN LYS LYS THR GLU TRP GLY LYS SEQRES 6 B 179 ILE LYS ASP HIS PHE ARG LYS GLN LYS ASP ILE PRO LYS SEQRES 7 B 179 ASP TRP THR HIS ASP ASP PHE LEU GLN THR LEU LEU MET SEQRES 8 B 179 LYS ASP LEU LEU LEU GLU ILE ILE GLN ASP THR TYR GLY SEQRES 9 B 179 ASP ALA ASN GLU ILE LYS ARG ILE GLU ALA LEU LEU GLU SEQRES 10 B 179 GLN ALA GLY VAL GLY GLY ILE ASP PHE ALA ALA LEU ALA SEQRES 11 B 179 GLY LEU TYR THR LYS GLY PHE VAL ALA GLU LYS ASP THR SEQRES 12 B 179 THR ILE ASP LYS LEU LEU GLN HIS GLU GLN LYS GLU ALA SEQRES 13 B 179 ASP LYS CYS LEU LYS THR HIS THR ASP ASP THR CYS PRO SEQRES 14 B 179 PRO GLN GLU ASP ARG SER VAL ALA ARG SER HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET NAG A 509 14 HET NAG A 510 14 HET NAG A 511 14 HET PLM A 512 18 HET PLM A 513 18 HET GOL A 514 6 HET GOL A 515 6 HET GOL A 516 6 HET GOL A 517 6 HET TRS A 518 8 HET GOL B 801 6 HET TRS B 802 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PLM PALMITIC ACID HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 MAN C6 H12 O6 FORMUL 12 PLM 2(C16 H32 O2) FORMUL 14 GOL 5(C3 H8 O3) FORMUL 18 TRS 2(C4 H12 N O3 1+) FORMUL 21 HOH *152(H2 O) HELIX 1 AA1 THR A 37 VAL A 42 1 6 HELIX 2 AA2 THR A 48 LYS A 56 1 9 HELIX 3 AA3 ASN A 72 SER A 80 1 9 HELIX 4 AA4 PRO A 124 SER A 127 5 4 HELIX 5 AA5 ASN A 139 TYR A 149 1 11 HELIX 6 AA6 ASN A 151 SER A 165 1 15 HELIX 7 AA7 LEU A 175 GLY A 181 1 7 HELIX 8 AA8 PHE A 186 VAL A 190 5 5 HELIX 9 AA9 ASN A 220 VAL A 224 5 5 HELIX 10 AB1 GLU A 240 MET A 245 5 6 HELIX 11 AB2 PRO A 296 ALA A 301 5 6 HELIX 12 AB3 ASN A 306 CYS A 313 5 8 HELIX 13 AB4 SER A 331 LYS A 334 5 4 HELIX 14 AB5 PRO A 344 LEU A 347 5 4 HELIX 15 AB6 SER A 350 GLU A 355 1 6 HELIX 16 AB7 ASN A 363 ARG A 368 1 6 HELIX 17 AB8 ILE A 399 LYS A 403 5 5 HELIX 18 AB9 GLY A 423 VAL A 434 1 12 HELIX 19 AC1 SER B 581 GLY B 605 1 25 HELIX 20 AC2 GLY B 619 ARG B 646 1 28 HELIX 21 AC3 THR B 656 MET B 666 1 11 HELIX 22 AC4 MET B 666 GLY B 679 1 14 HELIX 23 AC5 ASP B 680 ALA B 694 1 15 HELIX 24 AC6 THR B 718 HIS B 738 1 21 SHEET 1 AA1 7 ALA A 120 PHE A 122 0 SHEET 2 AA1 7 ILE A 83 VAL A 95 -1 N ARG A 94 O ILE A 121 SHEET 3 AA1 7 VAL A 61 VAL A 70 -1 N ARG A 63 O TYR A 93 SHEET 4 AA1 7 TYR A 409 THR A 421 -1 O ASN A 417 N GLN A 64 SHEET 5 AA1 7 THR A 380 VAL A 393 -1 N LEU A 391 O VAL A 411 SHEET 6 AA1 7 VAL A 339 SER A 342 -1 N SER A 342 O GLN A 388 SHEET 7 AA1 7 VAL A 327 ASP A 329 -1 N LEU A 328 O ILE A 341 SHEET 1 AA2 9 VAL A 263 SER A 268 0 SHEET 2 AA2 9 ARG A 273 LEU A 285 -1 O ALA A 277 N LEU A 264 SHEET 3 AA2 9 ILE A 288 VAL A 294 -1 O VAL A 290 N VAL A 283 SHEET 4 AA2 9 TYR A 370 ILE A 373 -1 O LEU A 371 N PHE A 293 SHEET 5 AA2 9 THR A 380 VAL A 393 -1 O GLN A 382 N ASP A 372 SHEET 6 AA2 9 TYR A 409 THR A 421 -1 O VAL A 411 N LEU A 391 SHEET 7 AA2 9 VAL A 61 VAL A 70 -1 N GLN A 64 O ASN A 417 SHEET 8 AA2 9 ILE A 83 VAL A 95 -1 O TYR A 93 N ARG A 63 SHEET 9 AA2 9 ILE A 357 ASP A 358 1 O ASP A 358 N ILE A 83 SHEET 1 AA3 4 GLU A 101 ASP A 106 0 SHEET 2 AA3 4 THR A 111 PRO A 117 -1 O LEU A 115 N GLU A 101 SHEET 3 AA3 4 ALA A 208 PHE A 215 -1 O VAL A 214 N VAL A 112 SHEET 4 AA3 4 ILE A 227 TYR A 230 -1 O THR A 229 N LYS A 213 SHEET 1 AA4 2 ASN A 134 LEU A 138 0 SHEET 2 AA4 2 PHE A 170 THR A 174 -1 O GLN A 171 N VAL A 137 SHEET 1 AA5 2 TYR A 182 ARG A 183 0 SHEET 2 AA5 2 THR A 197 VAL A 198 -1 O VAL A 198 N TYR A 182 SSBOND 1 CYS A 243 CYS A 311 1555 1555 2.06 SSBOND 2 CYS A 272 CYS A 333 1555 1555 2.26 SSBOND 3 CYS A 313 CYS A 322 1555 1555 2.05 SSBOND 4 CYS B 607 CYS B 620 1555 1555 2.04 SSBOND 5 CYS B 616 CYS B 743 1555 1555 2.04 SSBOND 6 CYS B 624 CYS B 734 1555 1555 2.04 LINK ND2 ASN A 79 C1 NAG A 508 1555 1555 1.43 LINK ND2 ASN A 102 C1 NAG A 509 1555 1555 1.43 LINK ND2 ASN A 134 C1 NAG A 507 1555 1555 1.43 LINK ND2 ASN A 205 C1 NAG A 506 1555 1555 1.43 LINK ND2 ASN A 220 C1 NAG A 510 1555 1555 1.43 LINK ND2 ASN A 235 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 247 C1 NAG A 504 1555 1555 1.43 LINK ND2 ASN A 321 C1 NAG A 511 1555 1555 1.43 LINK ND2 ASN A 417 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.43 CISPEP 1 GLY A 89 PRO A 90 0 2.25 CISPEP 2 TYR A 202 PRO A 203 0 -6.04 CISPEP 3 GLY A 210 VAL A 211 0 1.24 CISPEP 4 CYS B 743 PRO B 744 0 1.05 CRYST1 129.826 40.726 138.836 90.00 114.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007703 0.000000 0.003567 0.00000 SCALE2 0.000000 0.024554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007938 0.00000